Wall clock time and date at job start Mon Mar 30 2020 01:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70408 * 2 1 4 4 C 1.52760 * 109.50994 * 239.88681 * 2 1 3 5 5 C 1.53044 * 109.38623 * 185.70620 * 4 2 1 6 6 C 1.53045 * 109.53913 * 61.23408 * 5 4 2 7 7 C 1.53187 * 109.31332 * 298.64163 * 6 5 4 8 8 H 1.09001 * 109.58695 * 294.84463 * 7 6 5 9 9 C 1.50699 * 109.70385 * 174.49003 * 7 6 5 10 10 O 1.20825 * 119.99650 * 320.43438 * 9 7 6 11 11 O 1.34225 * 120.00213 * 140.43092 * 9 7 6 12 12 N 1.46924 * 109.59033 * 120.35780 * 2 1 3 13 13 C 1.34776 * 120.63050 * 353.42207 * 12 2 1 14 14 O 1.21283 * 119.99704 * 8.62613 * 13 12 2 15 15 C 1.50700 * 120.00575 * 188.63371 * 13 12 2 16 16 C 1.52997 * 109.47184 * 166.93728 * 15 13 12 17 17 C 1.50708 * 109.46777 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99963 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00278 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99954 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47347 * 89.99504 * 21 19 17 23 23 H 1.48496 * 109.47023 * 209.99660 * 21 19 17 24 24 H 1.48504 * 109.47227 * 329.99451 * 21 19 17 25 25 H 1.09004 * 109.47286 * 302.16565 * 1 2 3 26 26 H 1.09004 * 109.47199 * 62.16812 * 1 2 3 27 27 H 1.09001 * 109.47055 * 182.16624 * 1 2 3 28 28 H 1.08996 * 109.56667 * 65.67051 * 4 2 1 29 29 H 1.09000 * 109.38877 * 305.63245 * 4 2 1 30 30 H 1.09005 * 109.45393 * 301.21796 * 5 4 2 31 31 H 1.08995 * 109.45265 * 181.25464 * 5 4 2 32 32 H 1.08999 * 109.49871 * 178.68461 * 6 5 4 33 33 H 1.08997 * 109.48865 * 58.59170 * 6 5 4 34 34 H 0.96699 * 117.00064 * 180.02562 * 11 9 7 35 35 H 1.09002 * 109.46702 * 46.93899 * 15 13 12 36 36 H 1.08998 * 109.46980 * 286.94508 * 15 13 12 37 37 H 1.08996 * 109.47508 * 299.99824 * 16 15 13 38 38 H 1.08994 * 109.46999 * 60.00673 * 16 15 13 39 39 H 0.96996 * 120.00492 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2456 5 6 3.5638 -0.8461 -1.1727 6 6 3.9524 -1.6686 0.0580 7 6 3.4645 -0.9519 1.3210 8 1 3.9929 -0.0049 1.4309 9 6 3.7219 -1.8171 2.5277 10 8 3.5470 -3.0109 2.4634 11 8 4.1455 -1.2616 3.6738 12 7 2.0226 -0.6996 1.1944 13 6 1.1674 -1.1071 2.1531 14 8 -0.0291 -1.0399 1.9668 15 6 1.6979 -1.6462 3.4566 16 6 0.5596 -1.7282 4.4756 17 6 1.0900 -2.2679 5.7789 18 1 2.1346 -2.5261 5.8712 19 6 0.2420 -2.4309 6.8536 20 7 0.7049 -2.9014 7.9911 21 14 -1.5646 -1.9836 6.6941 22 1 -2.3289 -3.1687 6.2287 23 1 -2.0847 -1.5465 8.0146 24 1 -1.7165 -0.8798 5.7123 25 1 -0.3634 0.5471 0.8700 26 1 -0.3634 0.4798 -0.9088 27 1 -0.3633 -1.0269 0.0388 28 1 1.7632 -0.1564 -2.1349 29 1 1.5964 -1.7168 -1.2944 30 1 4.0057 0.1477 -1.0997 31 1 3.9311 -1.3416 -2.0714 32 1 5.0364 -1.7761 0.0964 33 1 3.4905 -2.6540 -0.0025 34 1 4.2974 -1.8571 4.4204 35 1 2.4764 -0.9831 3.8340 36 1 2.1142 -2.6407 3.2959 37 1 0.1434 -0.7337 4.6362 38 1 -0.2188 -2.3912 4.0982 39 1 0.1083 -3.0165 8.7472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574266228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:49 Heat of formation + Delta-G solvation = -78.949123 kcal Electronic energy + Delta-G solvation = -22294.085781 eV Core-core repulsion = 19010.814037 eV Total energy + Delta-G solvation = -3283.271744 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.71220 -39.45055 -37.46771 -36.09297 -33.68312 -33.06778 -32.77536 -31.10536 -28.05085 -26.26883 -25.49498 -23.27296 -21.45374 -21.26186 -20.52173 -19.17383 -18.06179 -17.13869 -16.57612 -16.02964 -15.95738 -15.56523 -15.03253 -14.52502 -14.17492 -14.01902 -13.87359 -13.48838 -13.02954 -12.76113 -12.60712 -12.39572 -12.27378 -11.93021 -11.73913 -11.44857 -11.23485 -11.11040 -11.04963 -10.78510 -10.65992 -10.45249 -9.91024 -9.80884 -9.43980 -9.15641 -8.67208 -8.54678 -8.48716 -6.03470 -4.01478 1.87895 2.81171 3.06861 3.16795 3.38005 3.44190 3.54384 4.40288 4.50832 4.55322 4.67592 4.72078 4.95500 5.11433 5.18002 5.26996 5.32624 5.33345 5.44518 5.60622 5.69331 5.75763 5.81567 5.84424 5.98051 6.05222 6.17247 6.27902 6.41752 6.57895 6.75150 6.78399 7.35693 7.43711 7.49331 7.79026 7.90923 8.46693 8.55901 8.97417 9.60015 11.09292 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.006452 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.388788 B = 4338.402652 C = 5238.425000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.146 3.854 3 H 0.071 0.929 4 C -0.136 4.136 5 C -0.116 4.116 6 C -0.126 4.126 7 C 0.155 3.845 8 H 0.103 0.897 9 C 0.498 3.502 10 O -0.496 6.496 11 O -0.512 6.512 12 N -0.613 5.613 13 C 0.517 3.483 14 O -0.522 6.522 15 C -0.227 4.227 16 C 0.012 3.988 17 C -0.520 4.520 18 H 0.070 0.930 19 C 0.070 3.930 20 N -0.903 5.903 21 Si 0.878 3.122 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.263 1.263 25 H 0.072 0.928 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.424 0.576 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.017 0.983 38 H 0.019 0.981 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.739 6.703 -18.462 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.044 3.956 3 H 0.089 0.911 4 C -0.174 4.174 5 C -0.153 4.153 6 C -0.164 4.164 7 C 0.050 3.950 8 H 0.121 0.879 9 C 0.341 3.659 10 O -0.382 6.382 11 O -0.328 6.328 12 N -0.353 5.353 13 C 0.309 3.691 14 O -0.397 6.397 15 C -0.265 4.265 16 C -0.026 4.026 17 C -0.558 4.558 18 H 0.089 0.911 19 C -0.132 4.132 20 N -0.542 5.542 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.187 1.187 25 H 0.091 0.909 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.286 0.714 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.903 6.611 -18.695 21.347 hybrid contribution -0.811 -0.223 0.598 1.032 sum 7.092 6.388 -18.097 20.460 Atomic orbital electron populations 1.22226 0.92210 1.04191 1.00731 1.21213 0.96138 0.94741 0.83551 0.91117 1.22000 0.95719 1.01949 0.97717 1.21499 0.96065 1.00344 0.97403 1.21916 1.01661 1.00487 0.92353 1.20779 0.84156 0.98858 0.91215 0.87872 1.22381 0.72001 0.87561 0.83971 1.90698 1.46329 1.17098 1.84122 1.84509 1.78927 1.46950 1.22365 1.48314 1.04700 1.60340 1.21944 1.21486 0.86595 0.76043 0.85014 1.90689 1.15699 1.53629 1.79675 1.23901 1.05127 1.05039 0.92424 1.19287 0.92950 0.97262 0.93126 1.21031 0.97379 1.43097 0.94265 0.91149 1.24943 0.98694 0.94423 0.95100 1.69899 1.35806 1.46045 1.02476 0.86794 0.85624 0.79801 0.77293 1.20248 1.21434 1.18717 0.90872 0.94073 0.90721 0.90578 0.91146 0.91405 0.90935 0.90035 0.89645 0.71364 0.85567 0.85684 0.96462 0.96296 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 7.59 37.16 0.28 -1.63 16 2 C 0.15 1.76 3.47 -67.82 -0.24 1.52 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.27 5.34 -26.83 -0.14 -1.41 16 5 C -0.12 -0.89 5.89 -26.68 -0.16 -1.05 16 6 C -0.13 -1.21 5.18 -26.61 -0.14 -1.35 16 7 C 0.16 1.85 3.37 -68.75 -0.23 1.62 16 8 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 9 C 0.50 7.16 4.08 36.01 0.15 7.31 16 10 O -0.50 -8.60 14.60 -18.75 -0.27 -8.87 16 11 O -0.51 -6.78 10.79 -39.24 -0.42 -7.21 16 12 N -0.61 -9.00 2.98 -159.29 -0.47 -9.48 16 13 C 0.52 10.08 7.45 -10.99 -0.08 10.00 16 14 O -0.52 -11.48 11.41 5.56 0.06 -11.42 16 15 C -0.23 -4.76 3.24 -27.88 -0.09 -4.85 16 16 C 0.01 0.30 3.43 -27.88 -0.10 0.21 16 17 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 18 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 20 N -0.90 -28.01 13.96 55.43 0.77 -27.23 16 21 Si 0.88 22.96 27.47 -169.99 -4.67 18.29 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 25 H 0.07 1.20 6.75 -51.93 -0.35 0.85 16 26 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.22 6.76 -51.93 -0.35 0.87 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.00 7.71 -51.93 -0.40 0.60 16 34 H 0.42 4.86 9.10 76.99 0.70 5.56 16 35 H 0.13 2.43 4.54 -22.59 -0.10 2.33 16 36 H 0.13 2.72 4.56 -54.07 -0.25 2.47 16 37 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 38 H 0.02 0.51 7.39 -51.93 -0.38 0.13 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 301.56 15.07 4.54 4.54 Total: -1.00 -34.89 301.56 -6.11 -41.00 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.48 Total: 3.33 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -1.18 Total: -2.95 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.30 Total: -36.71 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.63 Total: -27.50 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -34.89 -6.11 -41.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574266228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.946 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds