Wall clock time and date at job start Mon Mar 30 2020 01:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70408 * 2 1 4 4 C 1.52760 * 109.50994 * 239.88681 * 2 1 3 5 5 C 1.53044 * 109.38623 * 185.70620 * 4 2 1 6 6 C 1.53045 * 109.53913 * 61.23408 * 5 4 2 7 7 C 1.53187 * 109.31332 * 298.64163 * 6 5 4 8 8 H 1.09001 * 109.58695 * 294.84463 * 7 6 5 9 9 C 1.50699 * 109.70385 * 174.49003 * 7 6 5 10 10 O 1.20825 * 119.99650 * 320.43438 * 9 7 6 11 11 O 1.34225 * 120.00213 * 140.43092 * 9 7 6 12 12 N 1.46924 * 109.59033 * 120.35780 * 2 1 3 13 13 C 1.34776 * 120.63050 * 353.42207 * 12 2 1 14 14 O 1.21283 * 119.99704 * 8.62613 * 13 12 2 15 15 C 1.50700 * 120.00575 * 188.63371 * 13 12 2 16 16 C 1.52997 * 109.47184 * 166.93728 * 15 13 12 17 17 C 1.50708 * 109.46777 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00013 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99963 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00278 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 119.99954 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47347 * 89.99504 * 21 19 17 23 23 H 1.48496 * 109.47023 * 209.99660 * 21 19 17 24 24 H 1.48504 * 109.47227 * 329.99451 * 21 19 17 25 25 H 1.09004 * 109.47286 * 302.16565 * 1 2 3 26 26 H 1.09004 * 109.47199 * 62.16812 * 1 2 3 27 27 H 1.09001 * 109.47055 * 182.16624 * 1 2 3 28 28 H 1.08996 * 109.56667 * 65.67051 * 4 2 1 29 29 H 1.09000 * 109.38877 * 305.63245 * 4 2 1 30 30 H 1.09005 * 109.45393 * 301.21796 * 5 4 2 31 31 H 1.08995 * 109.45265 * 181.25464 * 5 4 2 32 32 H 1.08999 * 109.49871 * 178.68461 * 6 5 4 33 33 H 1.08997 * 109.48865 * 58.59170 * 6 5 4 34 34 H 0.96699 * 117.00064 * 180.02562 * 11 9 7 35 35 H 1.09002 * 109.46702 * 46.93899 * 15 13 12 36 36 H 1.08998 * 109.46980 * 286.94508 * 15 13 12 37 37 H 1.08996 * 109.47508 * 299.99824 * 16 15 13 38 38 H 1.08994 * 109.46999 * 60.00673 * 16 15 13 39 39 H 0.96996 * 120.00492 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0401 -0.7224 -1.2456 5 6 3.5638 -0.8461 -1.1727 6 6 3.9524 -1.6686 0.0580 7 6 3.4645 -0.9519 1.3210 8 1 3.9929 -0.0049 1.4309 9 6 3.7219 -1.8171 2.5277 10 8 3.5470 -3.0109 2.4634 11 8 4.1455 -1.2616 3.6738 12 7 2.0226 -0.6996 1.1944 13 6 1.1674 -1.1071 2.1531 14 8 -0.0291 -1.0399 1.9668 15 6 1.6979 -1.6462 3.4566 16 6 0.5596 -1.7282 4.4756 17 6 1.0900 -2.2679 5.7789 18 1 2.1346 -2.5261 5.8712 19 6 0.2420 -2.4309 6.8536 20 7 0.7049 -2.9014 7.9911 21 14 -1.5646 -1.9836 6.6941 22 1 -2.3289 -3.1687 6.2287 23 1 -2.0847 -1.5465 8.0146 24 1 -1.7165 -0.8798 5.7123 25 1 -0.3634 0.5471 0.8700 26 1 -0.3634 0.4798 -0.9088 27 1 -0.3633 -1.0269 0.0388 28 1 1.7632 -0.1564 -2.1349 29 1 1.5964 -1.7168 -1.2944 30 1 4.0057 0.1477 -1.0997 31 1 3.9311 -1.3416 -2.0714 32 1 5.0364 -1.7761 0.0964 33 1 3.4905 -2.6540 -0.0025 34 1 4.2974 -1.8571 4.4204 35 1 2.4764 -0.9831 3.8340 36 1 2.1142 -2.6407 3.2959 37 1 0.1434 -0.7337 4.6362 38 1 -0.2188 -2.3912 4.0982 39 1 0.1083 -3.0165 8.7472 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574266228.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:48 Heat of formation + Delta-G solvation = -103.798364 kcal Electronic energy + Delta-G solvation = -22295.163324 eV Core-core repulsion = 19010.814037 eV Total energy + Delta-G solvation = -3284.349288 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.92719 -40.69624 -38.65327 -37.27182 -35.61236 -34.38768 -33.78973 -33.02474 -29.23198 -28.03654 -26.43388 -24.69894 -22.73895 -22.32863 -21.99577 -20.38739 -19.21317 -19.02075 -17.97343 -17.25769 -17.20367 -17.01818 -16.37542 -16.06301 -15.60619 -15.24287 -15.01252 -14.76423 -14.55527 -14.22930 -13.95763 -13.66127 -13.56033 -13.39247 -13.02103 -12.92596 -12.64054 -12.35369 -12.13747 -11.98136 -11.82194 -11.75323 -11.65654 -11.53914 -11.31290 -11.12824 -10.78111 -10.10664 -9.68946 -8.35184 -6.37328 0.71530 1.28201 1.29768 1.44247 1.48822 1.86632 1.97706 2.30804 3.00197 3.49705 3.57737 3.86871 3.91620 4.03049 4.10611 4.17131 4.26785 4.35630 4.41114 4.48484 4.69971 4.77966 4.86102 4.92610 5.00097 5.04722 5.16800 5.21462 5.22983 5.31637 5.36624 5.44372 5.51430 5.54881 5.65058 6.14936 6.20961 6.65411 6.80396 7.08612 7.27471 8.80043 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024852 B = 0.006452 C = 0.005344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.388788 B = 4338.402652 C = 5238.425000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.139 3.861 3 H 0.103 0.897 4 C -0.131 4.131 5 C -0.108 4.108 6 C -0.123 4.123 7 C 0.150 3.850 8 H 0.143 0.857 9 C 0.494 3.506 10 O -0.530 6.530 11 O -0.509 6.509 12 N -0.604 5.604 13 C 0.512 3.488 14 O -0.558 6.558 15 C -0.221 4.221 16 C 0.018 3.982 17 C -0.525 4.525 18 H 0.054 0.946 19 C 0.018 3.982 20 N -0.939 5.939 21 Si 0.934 3.066 22 H -0.274 1.274 23 H -0.273 1.273 24 H -0.264 1.264 25 H 0.042 0.958 26 H 0.073 0.927 27 H 0.041 0.959 28 H 0.105 0.895 29 H 0.047 0.953 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.057 0.943 34 H 0.430 0.570 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.007 0.993 38 H -0.002 1.002 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.911 8.565 -20.837 24.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.039 3.961 3 H 0.121 0.879 4 C -0.169 4.169 5 C -0.146 4.146 6 C -0.161 4.161 7 C 0.046 3.954 8 H 0.160 0.840 9 C 0.338 3.662 10 O -0.420 6.420 11 O -0.324 6.324 12 N -0.342 5.342 13 C 0.302 3.698 14 O -0.437 6.437 15 C -0.259 4.259 16 C -0.020 4.020 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.180 4.180 20 N -0.579 5.579 21 Si 0.759 3.241 22 H -0.199 1.199 23 H -0.198 1.198 24 H -0.188 1.188 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.293 0.707 35 H 0.162 0.838 36 H 0.136 0.864 37 H 0.026 0.974 38 H 0.016 0.984 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 9.122 8.494 -21.094 24.501 hybrid contribution -1.078 -0.821 1.323 1.894 sum 8.045 7.673 -19.771 22.682 Atomic orbital electron populations 1.22065 0.94059 1.01903 1.00844 1.21554 0.94797 0.96416 0.83379 0.87926 1.21989 0.97031 1.00760 0.97122 1.21525 0.94526 1.01592 0.96914 1.21977 1.02974 0.99199 0.91988 1.21259 0.82605 1.00484 0.91012 0.83991 1.23084 0.70915 0.87492 0.84660 1.90683 1.47767 1.18850 1.84675 1.84471 1.78302 1.47074 1.22543 1.48264 1.05483 1.58927 1.21531 1.21125 0.86595 0.76571 0.85540 1.90695 1.17122 1.55431 1.80441 1.23795 1.03610 1.05644 0.92872 1.19109 0.94033 0.95696 0.93153 1.21320 0.96847 1.42559 0.95522 0.92743 1.25712 1.02766 0.94573 0.94935 1.69994 1.37376 1.47268 1.03251 0.85898 0.80924 0.79496 0.77786 1.19934 1.19795 1.18827 0.93920 0.90872 0.94017 0.87687 0.93398 0.88724 0.88929 0.87414 0.92381 0.70699 0.83836 0.86406 0.97435 0.98400 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 7.59 71.98 0.55 -3.02 16 2 C 0.14 2.97 3.47 44.83 0.16 3.12 16 3 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.13 -1.98 5.34 30.53 0.16 -1.82 16 5 C -0.11 -1.14 5.89 30.62 0.18 -0.96 16 6 C -0.12 -1.97 5.18 30.67 0.16 -1.81 16 7 C 0.15 3.17 3.37 44.23 0.15 3.32 16 8 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 9 C 0.49 13.75 4.08 71.24 0.29 14.04 16 10 O -0.53 -18.60 14.60 21.97 0.32 -18.28 16 11 O -0.51 -12.99 10.79 -51.37 -0.55 -13.54 16 12 N -0.60 -16.76 2.98 -776.26 -2.31 -19.07 16 13 C 0.51 20.08 7.45 87.66 0.65 20.73 16 14 O -0.56 -25.35 11.41 -3.04 -0.03 -25.39 16 15 C -0.22 -9.45 3.24 29.85 0.10 -9.36 16 16 C 0.02 0.96 3.43 29.85 0.10 1.06 16 17 C -0.52 -30.96 9.66 25.60 0.25 -30.72 16 18 H 0.05 3.30 7.99 -2.91 -0.02 3.28 16 19 C 0.02 1.10 5.47 84.65 0.46 1.57 16 20 N -0.94 -59.02 13.96 21.45 0.30 -58.72 16 21 Si 0.93 47.98 27.47 68.60 1.88 49.87 16 22 H -0.27 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 24 H -0.26 -13.50 6.54 99.48 0.65 -12.85 16 25 H 0.04 1.40 6.75 -2.38 -0.02 1.39 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.39 6.76 -2.39 -0.02 1.38 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 1.28 7.71 -2.39 -0.02 1.26 16 34 H 0.43 9.89 9.10 -22.39 -0.20 9.69 16 35 H 0.14 5.52 4.54 16.19 0.07 5.60 16 36 H 0.12 5.28 4.56 -36.26 -0.17 5.11 16 37 H 0.01 0.40 7.20 -2.39 -0.02 0.38 16 38 H 0.00 -0.14 7.39 -2.39 -0.02 -0.15 16 39 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -78.71 301.56 3.54 -75.16 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.73 Total: 13.82 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 3.21 Total: -3.84 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.01 Total: -77.79 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.27 Total: -57.22 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.88 Total: 49.87 kcal Total: -78.71 3.54 -75.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574266228.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.634 kcal (2) G-P(sol) polarization free energy of solvation -78.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds