Wall clock time and date at job start Mon Mar 30 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.50710 * 109.47267 * 119.99540 * 2 1 3 5 5 H 1.07998 * 119.99789 * 120.00227 * 4 2 1 6 6 C 1.37880 * 119.99848 * 300.00436 * 4 2 1 7 7 N 1.31521 * 119.99878 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47013 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47356 * 119.99413 * 8 6 4 11 11 H 1.48498 * 109.47361 * 239.99879 * 8 6 4 12 12 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 13 13 C 1.34784 * 119.99635 * 85.00093 * 12 2 1 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99961 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 17 17 C 1.50702 * 109.46858 * 299.99938 * 15 13 12 18 18 O 1.20823 * 120.00633 * 359.97438 * 17 15 13 19 19 O 1.34229 * 119.99977 * 180.02562 * 17 15 13 20 20 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 21 21 C 1.54266 * 110.03226 * 297.16808 * 20 15 13 22 22 C 1.54891 * 104.19583 * 217.10541 * 21 20 15 23 23 C 1.54893 * 102.74919 * 37.93776 * 22 21 20 24 24 C 1.53878 * 110.03511 * 179.97438 * 20 15 13 25 25 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 26 26 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99446 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00292 * 265.27526 * 12 2 1 30 30 H 0.96700 * 117.00597 * 180.02562 * 19 17 15 31 31 H 1.09003 * 110.02009 * 58.60659 * 20 15 13 32 32 H 1.09002 * 110.48317 * 335.78132 * 21 20 15 33 33 H 1.08998 * 110.48990 * 98.42604 * 21 20 15 34 34 H 1.09000 * 110.75830 * 279.62802 * 22 21 20 35 35 H 1.09000 * 110.91814 * 156.32710 * 22 21 20 36 36 H 1.08999 * 110.48738 * 203.38063 * 23 22 21 37 37 H 1.09004 * 110.59807 * 80.78997 * 23 22 21 38 38 H 1.08991 * 110.03272 * 238.57061 * 24 20 15 39 39 H 1.09003 * 110.03206 * 359.95493 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.1455 -2.2874 3.6040 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5863 4.8162 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1582 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 1 1.9761 -1.5508 -3.8324 17 6 4.0303 -1.2717 -3.3261 18 8 4.5538 -1.0987 -2.2510 19 8 4.6796 -1.9463 -4.2878 20 6 2.7011 0.2542 -4.7587 21 6 1.2821 0.7646 -5.0838 22 6 1.2643 0.8792 -6.6283 23 6 2.0861 -0.3564 -7.0723 24 6 3.2129 -0.4584 -6.0229 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1616 3.4844 29 1 2.2453 -1.6328 -1.1534 30 1 5.5631 -2.2756 -4.0732 31 1 3.3531 1.0925 -4.5133 32 1 0.5326 0.0491 -4.7456 33 1 1.1135 1.7398 -4.6270 34 1 1.7469 1.8010 -6.9530 35 1 0.2452 0.8230 -7.0110 36 1 2.5042 -0.1993 -8.0666 37 1 1.4678 -1.2540 -7.0568 38 1 4.1124 0.0348 -6.3912 39 1 3.4248 -1.5045 -5.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:55 Heat of formation + Delta-G solvation = -148.821872 kcal Electronic energy + Delta-G solvation = -21554.239806 eV Core-core repulsion = 18267.938153 eV Total energy + Delta-G solvation = -3286.301653 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.79836 -38.81930 -37.67833 -36.02995 -34.76571 -32.46005 -31.85338 -28.88212 -28.60414 -26.30014 -25.20549 -22.88277 -21.02987 -20.57727 -19.61047 -19.30639 -18.17812 -17.21090 -16.68446 -16.02104 -15.81274 -15.10373 -14.98012 -14.60419 -14.09390 -13.80756 -13.33887 -13.18071 -12.98049 -12.36601 -12.25330 -11.68550 -11.54985 -11.32828 -11.18060 -11.04778 -10.96312 -10.93252 -10.88506 -10.68800 -10.60603 -10.43236 -10.27758 -10.20552 -10.18617 -9.08204 -8.99082 -8.50556 -7.87048 -6.07870 -4.15693 2.23327 2.72147 3.27225 3.34790 3.38627 3.63133 3.92539 4.39517 4.51979 4.66090 4.77035 5.09863 5.13066 5.24427 5.29647 5.48828 5.51922 5.64481 5.68468 5.72196 5.83509 5.93537 6.05584 6.19967 6.31351 6.41237 6.48780 6.54615 6.83914 6.97014 7.16703 7.47212 7.57550 7.73576 7.91056 7.95839 8.18390 8.67196 8.81512 9.09649 9.50853 10.98405 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.005059 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.967805 B = 5533.652799 C = 6283.577115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.528 4.528 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.692 5.692 13 C 0.518 3.482 14 O -0.540 6.540 15 C -0.100 4.100 16 H 0.126 0.874 17 C 0.482 3.518 18 O -0.488 6.488 19 O -0.512 6.512 20 C -0.066 4.066 21 C -0.109 4.109 22 C -0.127 4.127 23 C -0.124 4.124 24 C -0.127 4.127 25 H 0.091 0.909 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.387 0.613 30 H 0.405 0.595 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.078 -5.473 -17.637 18.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.566 4.566 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.523 5.523 8 Si 0.729 3.271 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.338 5.338 13 C 0.300 3.700 14 O -0.418 6.418 15 C -0.122 4.122 16 H 0.144 0.856 17 C 0.322 3.678 18 O -0.374 6.374 19 O -0.325 6.325 20 C -0.085 4.085 21 C -0.146 4.146 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.164 4.164 25 H 0.109 0.891 26 H 0.034 0.966 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.220 0.780 30 H 0.264 0.736 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.540 -4.302 -17.254 17.963 hybrid contribution 1.059 -1.220 1.122 1.966 sum 3.598 -5.521 -16.132 17.427 Atomic orbital electron populations 1.22082 0.98367 0.99101 1.00974 1.18768 0.90884 0.94049 0.79950 0.93300 1.21260 1.31979 1.13154 0.90254 0.92034 1.24879 0.94875 0.94993 0.99022 1.69916 1.36185 1.22548 1.23679 0.86389 0.78557 0.79577 0.82562 1.19755 1.20886 1.20920 1.46434 1.63760 1.13464 1.10176 1.19511 0.79258 0.87340 0.83871 1.90661 1.51608 1.15178 1.84347 1.21670 0.91503 1.00708 0.98320 0.85649 1.23059 0.88050 0.75082 0.81602 1.90871 1.67442 1.53892 1.25149 1.84597 1.35200 1.67594 1.45071 1.21512 0.99238 0.96267 0.91462 1.22353 0.94849 1.02677 0.94722 1.22547 0.99800 0.98048 0.96092 1.22373 0.97193 0.98337 0.98256 1.22434 0.97954 1.01953 0.94104 0.89072 0.96589 0.95492 0.92709 0.78040 0.73633 0.89972 0.91740 0.90008 0.91654 0.91736 0.92047 0.91756 0.91827 0.89589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 2 C 0.26 6.95 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 4 C -0.53 -14.57 8.73 -34.43 -0.30 -14.87 16 5 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 6 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -25.44 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 9 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.69 -15.11 4.46 -54.93 -0.24 -15.36 16 13 C 0.52 10.42 6.37 -10.98 -0.07 10.35 16 14 O -0.54 -12.54 14.20 5.56 0.08 -12.46 16 15 C -0.10 -1.45 1.97 -92.93 -0.18 -1.63 16 16 H 0.13 1.49 8.12 -51.93 -0.42 1.07 16 17 C 0.48 6.89 7.46 36.01 0.27 7.16 16 18 O -0.49 -9.11 16.15 -18.75 -0.30 -9.42 16 19 O -0.51 -5.03 10.51 -39.26 -0.41 -5.44 16 20 C -0.07 -0.87 2.10 -89.50 -0.19 -1.06 16 21 C -0.11 -1.42 5.18 -25.07 -0.13 -1.55 16 22 C -0.13 -1.30 6.91 -24.74 -0.17 -1.47 16 23 C -0.12 -1.14 6.83 -25.04 -0.17 -1.31 16 24 C -0.13 -1.30 5.60 -25.59 -0.14 -1.45 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.39 7.69 8.24 -40.82 -0.34 7.35 16 30 H 0.40 2.40 9.10 45.56 0.41 2.82 16 31 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 32 H 0.06 0.85 7.84 -51.93 -0.41 0.44 16 33 H 0.08 1.25 7.45 -51.93 -0.39 0.86 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.85 5.50 -51.93 -0.29 0.56 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -32.78 316.79 -6.57 -39.34 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -5.05 Total: 7.75 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: -1.02 Total: -0.66 kcal Atomic # 7 Polarization: -40.55 SS G_CDS: 0.38 Total: -40.17 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.64 Total: -27.32 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.78 -6.57 -39.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.478 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds