Wall clock time and date at job start Mon Mar 30 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.50710 * 109.47267 * 119.99540 * 2 1 3 5 5 H 1.07998 * 119.99789 * 120.00227 * 4 2 1 6 6 C 1.37880 * 119.99848 * 300.00436 * 4 2 1 7 7 N 1.31521 * 119.99878 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00061 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47013 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47356 * 119.99413 * 8 6 4 11 11 H 1.48498 * 109.47361 * 239.99879 * 8 6 4 12 12 N 1.46494 * 109.47305 * 239.99352 * 2 1 3 13 13 C 1.34784 * 119.99635 * 85.00093 * 12 2 1 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99961 * 180.02562 * 13 12 2 16 16 H 1.08997 * 109.47392 * 59.99562 * 15 13 12 17 17 C 1.50702 * 109.46858 * 299.99938 * 15 13 12 18 18 O 1.20823 * 120.00633 * 359.97438 * 17 15 13 19 19 O 1.34229 * 119.99977 * 180.02562 * 17 15 13 20 20 C 1.52992 * 109.47257 * 180.02562 * 15 13 12 21 21 C 1.54266 * 110.03226 * 297.16808 * 20 15 13 22 22 C 1.54891 * 104.19583 * 217.10541 * 21 20 15 23 23 C 1.54893 * 102.74919 * 37.93776 * 22 21 20 24 24 C 1.53878 * 110.03511 * 179.97438 * 20 15 13 25 25 H 1.08996 * 109.46997 * 300.00209 * 1 2 3 26 26 H 1.08991 * 109.46933 * 60.00690 * 1 2 3 27 27 H 1.09000 * 109.46920 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99446 * 179.97438 * 7 6 4 29 29 H 0.96995 * 120.00292 * 265.27526 * 12 2 1 30 30 H 0.96700 * 117.00597 * 180.02562 * 19 17 15 31 31 H 1.09003 * 110.02009 * 58.60659 * 20 15 13 32 32 H 1.09002 * 110.48317 * 335.78132 * 21 20 15 33 33 H 1.08998 * 110.48990 * 98.42604 * 21 20 15 34 34 H 1.09000 * 110.75830 * 279.62802 * 22 21 20 35 35 H 1.09000 * 110.91814 * 156.32710 * 22 21 20 36 36 H 1.08999 * 110.48738 * 203.38063 * 23 22 21 37 37 H 1.09004 * 110.59807 * 80.78997 * 23 22 21 38 38 H 1.08991 * 110.03272 * 238.57061 * 24 20 15 39 39 H 1.09003 * 110.03206 * 359.95493 * 24 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1315 6 6 1.6993 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.1455 -2.2874 3.6040 10 1 3.1466 -0.1870 4.8165 11 1 1.1661 -1.5863 4.8162 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8582 1.1582 -2.4117 15 6 2.6489 -0.7290 -3.5876 16 1 1.9761 -1.5508 -3.8324 17 6 4.0303 -1.2717 -3.3261 18 8 4.5538 -1.0987 -2.2510 19 8 4.6796 -1.9463 -4.2878 20 6 2.7011 0.2542 -4.7587 21 6 1.2821 0.7646 -5.0838 22 6 1.2643 0.8792 -6.6283 23 6 2.0861 -0.3564 -7.0723 24 6 3.2129 -0.4584 -6.0229 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.7088 1.1616 3.4844 29 1 2.2453 -1.6328 -1.1534 30 1 5.5631 -2.2756 -4.0732 31 1 3.3531 1.0925 -4.5133 32 1 0.5326 0.0491 -4.7456 33 1 1.1135 1.7398 -4.6270 34 1 1.7469 1.8010 -6.9530 35 1 0.2452 0.8230 -7.0110 36 1 2.5042 -0.1993 -8.0666 37 1 1.4678 -1.2540 -7.0568 38 1 4.1124 0.0348 -6.3912 39 1 3.4248 -1.5045 -5.8019 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987680.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:55 Heat of formation + Delta-G solvation = -171.788427 kcal Electronic energy + Delta-G solvation = -21555.235711 eV Core-core repulsion = 18267.938153 eV Total energy + Delta-G solvation = -3287.297558 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.04693 -40.24305 -38.81077 -37.11163 -36.69410 -34.36613 -33.16179 -30.74871 -29.49504 -27.47093 -27.28789 -24.25984 -22.66697 -21.46113 -21.16788 -20.54625 -19.33297 -18.89153 -17.82559 -17.63359 -17.26324 -16.77315 -16.29734 -15.88160 -15.53260 -15.22932 -14.72952 -14.48911 -14.32368 -14.07074 -13.70176 -13.35734 -13.02005 -12.87341 -12.75983 -12.62171 -12.38148 -12.28934 -12.15001 -12.13862 -11.79539 -11.76344 -11.53234 -11.45283 -11.20628 -11.11802 -10.77580 -10.58834 -9.75472 -8.19611 -6.36380 1.08724 1.39751 1.41955 1.42958 1.55035 2.25121 2.31962 2.51294 3.10394 3.40030 3.71416 3.72742 3.94075 4.16097 4.29918 4.36104 4.63686 4.68642 4.73382 4.75721 4.86465 4.91163 4.94395 5.06950 5.18539 5.21628 5.34126 5.38039 5.42803 5.54677 5.57422 5.58696 5.59255 5.65889 5.88879 6.08843 6.70327 6.87868 6.94768 7.28807 7.46108 8.86949 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.005059 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.967805 B = 5533.652799 C = 6283.577115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.546 4.546 5 H 0.065 0.935 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.693 5.693 13 C 0.511 3.489 14 O -0.578 6.578 15 C -0.091 4.091 16 H 0.162 0.838 17 C 0.497 3.503 18 O -0.539 6.539 19 O -0.487 6.487 20 C -0.065 4.065 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.118 4.118 24 C -0.118 4.118 25 H 0.067 0.933 26 H 0.017 0.983 27 H 0.042 0.958 28 H 0.266 0.734 29 H 0.399 0.601 30 H 0.428 0.572 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.047 0.953 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.739 -7.913 -19.340 21.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.584 4.584 5 H 0.083 0.917 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.797 3.203 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.341 5.341 13 C 0.297 3.703 14 O -0.458 6.458 15 C -0.113 4.113 16 H 0.180 0.820 17 C 0.339 3.661 18 O -0.428 6.428 19 O -0.301 6.301 20 C -0.084 4.084 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.155 4.155 24 C -0.155 4.155 25 H 0.086 0.914 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.233 0.767 30 H 0.290 0.710 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.225 -6.784 -19.017 20.447 hybrid contribution 0.877 -0.407 1.585 1.857 sum 4.102 -7.191 -17.432 19.298 Atomic orbital electron populations 1.21870 0.97635 0.99630 0.99838 1.18356 0.91393 0.91668 0.81768 0.98671 1.21531 1.32357 1.13420 0.91070 0.91701 1.25780 0.94869 0.95628 1.02209 1.70055 1.37018 1.23829 1.24565 0.85296 0.78199 0.78436 0.78395 1.18851 1.20878 1.19860 1.46219 1.64226 1.13908 1.09706 1.20409 0.78012 0.87081 0.84835 1.90645 1.52825 1.17137 1.85223 1.21582 0.92719 1.01609 0.95375 0.82047 1.22785 0.87667 0.74436 0.81230 1.90874 1.68522 1.56092 1.27330 1.84515 1.36533 1.66229 1.42837 1.21540 0.98971 0.95509 0.92398 1.22327 0.94840 1.00791 0.97028 1.22528 1.00976 0.99010 0.93484 1.22373 0.96557 0.97969 0.98603 1.22393 0.98592 1.02069 0.92491 0.91449 0.96387 0.93912 0.92479 0.76707 0.70969 0.92579 0.91827 0.93416 0.91620 0.90560 0.90193 0.90529 0.91118 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.08 16 2 C 0.27 14.79 2.56 44.25 0.11 14.90 16 3 H 0.00 -0.30 7.58 -2.39 -0.02 -0.32 16 4 C -0.55 -30.60 8.73 25.60 0.22 -30.38 16 5 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 6 C 0.02 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -53.93 11.32 21.45 0.24 -53.69 16 8 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 9 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 12 N -0.69 -30.87 4.46 -446.08 -1.99 -32.86 16 13 C 0.51 21.05 6.37 87.66 0.56 21.61 16 14 O -0.58 -28.28 14.20 -3.03 -0.04 -28.32 16 15 C -0.09 -2.54 1.97 -12.29 -0.02 -2.57 16 16 H 0.16 3.36 8.12 -2.39 -0.02 3.34 16 17 C 0.50 13.33 7.46 71.24 0.53 13.86 16 18 O -0.54 -19.88 16.15 21.97 0.35 -19.53 16 19 O -0.49 -7.80 10.51 -51.40 -0.54 -8.34 16 20 C -0.06 -1.65 2.10 -10.07 -0.02 -1.67 16 21 C -0.11 -2.91 5.18 31.67 0.16 -2.74 16 22 C -0.12 -2.26 6.91 31.89 0.22 -2.04 16 23 C -0.12 -1.71 6.83 31.69 0.22 -1.49 16 24 C -0.12 -2.04 5.60 31.34 0.18 -1.86 16 25 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16 26 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.40 15.78 8.24 -92.71 -0.76 15.02 16 30 H 0.43 3.43 9.10 -74.06 -0.67 2.75 16 31 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.06 1.63 7.84 -2.39 -0.02 1.61 16 33 H 0.05 1.54 7.45 -2.39 -0.02 1.52 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.48 5.50 -2.39 -0.01 1.47 16 Total: -1.00 -74.37 316.79 2.96 -71.42 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.37 Total: 22.73 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 3.27 Total: 2.83 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -1.74 Total: -86.55 kcal Atomic # 8 Polarization: -55.96 SS G_CDS: -0.23 Total: -56.19 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -74.37 2.96 -71.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987680.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.372 kcal (2) G-P(sol) polarization free energy of solvation -74.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds