Wall clock time and date at job start Mon Mar 30 2020 01:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.46934 * 59.99921 * 15 14 12 17 17 O 1.20827 * 120.00194 * 145.00250 * 16 15 14 18 18 O 1.34229 * 120.00255 * 324.99854 * 16 15 14 19 19 C 1.53002 * 109.46958 * 300.00288 * 15 14 12 20 20 C 1.52996 * 109.46891 * 299.99606 * 19 15 14 21 21 C 1.53002 * 109.47346 * 300.00003 * 20 19 15 22 22 C 1.52997 * 109.46817 * 60.00263 * 21 20 19 23 23 C 1.52993 * 109.47021 * 180.02562 * 15 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 29 29 H 0.96704 * 117.00016 * 179.97438 * 18 16 15 30 30 H 1.09001 * 109.47142 * 59.99782 * 19 15 14 31 31 H 1.09004 * 109.47006 * 179.97438 * 19 15 14 32 32 H 1.09004 * 109.47368 * 180.02562 * 20 19 15 33 33 H 1.08996 * 109.47261 * 60.00575 * 20 19 15 34 34 H 1.08988 * 109.47229 * 299.99867 * 21 20 19 35 35 H 1.09002 * 109.47070 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47289 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.47261 * 59.99941 * 22 21 20 38 38 H 1.09004 * 109.46862 * 180.02562 * 23 15 14 39 39 H 1.08992 * 109.47399 * 299.99740 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6919 -2.3615 -3.6504 17 8 1.4042 -2.9008 -4.6927 18 8 1.5636 -3.0279 -2.4923 19 6 3.7247 -0.9415 -3.6508 20 6 4.2352 0.5008 -3.6511 21 6 3.7254 1.2221 -4.9004 22 6 2.1954 1.2227 -4.9002 23 6 1.6853 -0.2192 -4.8999 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.9026 -0.5283 4.4376 28 1 1.1494 0.5389 -2.5436 29 1 1.2368 -3.9366 -2.5426 30 1 4.0879 -1.4554 -2.7608 31 1 4.0878 -1.4560 -4.5406 32 1 5.3253 0.5004 -3.6517 33 1 3.8723 1.0149 -2.7612 34 1 4.0884 0.7081 -5.7903 35 1 4.0895 2.2495 -4.9008 36 1 1.8321 1.7369 -5.7900 37 1 1.8324 1.7368 -4.0102 38 1 2.0480 -0.7336 -5.7899 39 1 0.5954 -0.2185 -4.9000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:06 Heat of formation + Delta-G solvation = -134.858084 kcal Electronic energy + Delta-G solvation = -22394.561005 eV Core-core repulsion = 19108.864867 eV Total energy + Delta-G solvation = -3285.696138 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.95165 -38.84482 -37.57277 -35.69693 -33.80110 -33.39980 -31.35321 -30.90562 -29.57430 -25.12225 -24.48387 -23.10440 -22.75281 -21.05317 -19.86845 -18.77627 -17.89860 -16.80067 -16.67294 -16.24223 -15.64798 -14.94816 -14.75320 -14.55256 -14.06664 -13.72156 -13.48598 -13.09767 -12.75746 -12.62459 -12.45039 -12.31389 -12.27566 -12.15948 -11.58355 -11.23728 -11.14505 -10.96752 -10.87180 -10.65341 -10.58591 -10.35307 -10.24203 -10.05205 -9.62217 -9.08476 -8.65322 -8.59586 -8.50119 -6.04261 -4.03967 2.35352 3.22854 3.24095 3.30454 3.36486 3.63599 3.71242 4.38294 4.46030 4.63732 4.80648 5.03093 5.14468 5.25669 5.28410 5.40200 5.49088 5.52582 5.63152 5.80208 5.89127 5.92278 6.00911 6.04746 6.11684 6.15350 6.32244 6.37356 6.38610 6.46201 6.72233 6.74823 6.85704 7.17755 7.55576 8.09310 8.20911 8.56215 9.12909 9.19074 9.55281 11.08711 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.006569 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.226959 B = 4261.193767 C = 4669.159722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.002 4.002 3 H 0.050 0.950 4 C -0.502 4.502 5 H 0.095 0.905 6 C 0.070 3.930 7 N -0.897 5.897 8 Si 0.883 3.117 9 H -0.279 1.279 10 H -0.296 1.296 11 H -0.268 1.268 12 C 0.527 3.473 13 O -0.493 6.493 14 N -0.737 5.737 15 C 0.195 3.805 16 C 0.479 3.521 17 O -0.535 6.535 18 O -0.468 6.468 19 C -0.129 4.129 20 C -0.113 4.113 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.111 4.111 24 H 0.057 0.943 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.398 0.602 29 H 0.394 0.606 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.023 4.954 -16.829 17.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.067 0.933 4 C -0.540 4.540 5 H 0.112 0.888 6 C -0.132 4.132 7 N -0.535 5.535 8 Si 0.714 3.286 9 H -0.206 1.206 10 H -0.224 1.224 11 H -0.193 1.193 12 C 0.315 3.685 13 O -0.365 6.365 14 N -0.396 5.396 15 C 0.106 3.894 16 C 0.320 3.680 17 O -0.425 6.425 18 O -0.275 6.275 19 C -0.167 4.167 20 C -0.151 4.151 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.149 4.149 24 H 0.077 0.923 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.233 0.767 29 H 0.250 0.750 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.417 4.451 -16.744 17.331 hybrid contribution -1.257 0.515 0.153 1.367 sum -1.673 4.965 -16.592 17.399 Atomic orbital electron populations 1.22115 0.97534 1.01487 0.99028 1.19290 0.93063 0.97405 0.92604 0.93264 1.20940 1.31905 1.14006 0.87125 0.88753 1.24977 0.95856 0.96512 0.95832 1.69881 1.45583 1.40185 0.97844 0.86936 0.80741 0.83939 0.77019 1.20646 1.22394 1.19297 1.21207 0.79455 0.84354 0.83449 1.90563 1.35520 1.24690 1.85686 1.46438 1.55882 1.32701 1.04531 1.19956 0.95883 0.85504 0.88047 1.24006 0.73069 0.89652 0.81261 1.90661 1.47921 1.69960 1.33935 1.85089 1.77320 1.30903 1.34185 1.21948 0.91651 0.98807 1.04342 1.21451 1.00347 0.94742 0.98527 1.21578 0.95257 1.00559 0.98416 1.21539 0.96250 0.95380 1.02384 1.21681 1.01202 0.96073 0.95906 0.92342 0.95043 0.93428 0.92628 0.76683 0.74955 0.88354 0.91283 0.91533 0.91010 0.91967 0.91770 0.91249 0.91406 0.89392 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.57 37.16 0.32 -2.57 16 2 C 0.00 -0.04 2.23 -92.92 -0.21 -0.25 16 3 H 0.05 1.07 7.20 -51.93 -0.37 0.70 16 4 C -0.50 -14.08 8.96 -34.44 -0.31 -14.39 16 5 H 0.09 3.02 7.00 -52.49 -0.37 2.65 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.88 21.05 24.37 -169.99 -4.14 16.91 16 9 H -0.28 -6.49 6.87 56.52 0.39 -6.10 16 10 H -0.30 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.27 -5.90 6.53 56.52 0.37 -5.53 16 12 C 0.53 10.70 6.08 -10.99 -0.07 10.63 16 13 O -0.49 -11.51 10.71 -18.95 -0.20 -11.71 16 14 N -0.74 -11.32 3.93 -48.69 -0.19 -11.51 16 15 C 0.20 2.78 0.63 -132.97 -0.08 2.69 16 16 C 0.48 7.85 7.08 36.00 0.25 8.10 16 17 O -0.53 -9.29 16.85 -18.75 -0.32 -9.61 16 18 O -0.47 -8.07 9.59 -47.36 -0.45 -8.52 16 19 C -0.13 -1.82 4.50 -26.73 -0.12 -1.94 16 20 C -0.11 -1.35 5.76 -26.73 -0.15 -1.50 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.12 -1.07 5.75 -26.76 -0.15 -1.23 16 23 C -0.11 -1.23 4.31 -26.76 -0.12 -1.34 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.03 0.50 7.56 -51.93 -0.39 0.10 16 26 H 0.05 1.01 3.27 -51.93 -0.17 0.84 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.40 5.13 6.74 -40.82 -0.27 4.85 16 29 H 0.39 5.08 9.10 45.56 0.41 5.50 16 30 H 0.10 1.71 6.17 -51.93 -0.32 1.39 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.96 7.60 -51.93 -0.39 0.57 16 34 H 0.06 0.55 8.14 -51.94 -0.42 0.12 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.62 6.86 -51.93 -0.36 0.26 16 38 H 0.09 0.98 7.87 -51.93 -0.41 0.57 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -33.59 299.83 -5.69 -39.28 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -4.78 Total: 8.48 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -0.89 Total: -1.21 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.58 Total: -38.13 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.97 Total: -29.84 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.14 Total: 16.91 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.59 -5.69 -39.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.576 kcal (2) G-P(sol) polarization free energy of solvation -33.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds