Wall clock time and date at job start Mon Mar 30 2020 01:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.21277 * 120.00304 * 240.00314 * 12 2 1 14 14 N 1.34778 * 119.99637 * 59.99942 * 12 2 1 15 15 C 1.46505 * 119.99943 * 180.02562 * 14 12 2 16 16 C 1.50696 * 109.46934 * 59.99921 * 15 14 12 17 17 O 1.20827 * 120.00194 * 145.00250 * 16 15 14 18 18 O 1.34229 * 120.00255 * 324.99854 * 16 15 14 19 19 C 1.53002 * 109.46958 * 300.00288 * 15 14 12 20 20 C 1.52996 * 109.46891 * 299.99606 * 19 15 14 21 21 C 1.53002 * 109.47346 * 300.00003 * 20 19 15 22 22 C 1.52997 * 109.46817 * 60.00263 * 21 20 19 23 23 C 1.52993 * 109.47021 * 180.02562 * 15 14 12 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00446 * 0.02562 * 14 12 2 29 29 H 0.96704 * 117.00016 * 179.97438 * 18 16 15 30 30 H 1.09001 * 109.47142 * 59.99782 * 19 15 14 31 31 H 1.09004 * 109.47006 * 179.97438 * 19 15 14 32 32 H 1.09004 * 109.47368 * 180.02562 * 20 19 15 33 33 H 1.08996 * 109.47261 * 60.00575 * 20 19 15 34 34 H 1.08988 * 109.47229 * 299.99867 * 21 20 19 35 35 H 1.09002 * 109.47070 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47289 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.47261 * 59.99941 * 22 21 20 38 38 H 1.09004 * 109.46862 * 180.02562 * 23 15 14 39 39 H 1.08992 * 109.47399 * 299.99740 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 6 2.0324 -0.7104 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1947 -0.9409 -3.6507 16 6 1.6919 -2.3615 -3.6504 17 8 1.4042 -2.9008 -4.6927 18 8 1.5636 -3.0279 -2.4923 19 6 3.7247 -0.9415 -3.6508 20 6 4.2352 0.5008 -3.6511 21 6 3.7254 1.2221 -4.9004 22 6 2.1954 1.2227 -4.9002 23 6 1.6853 -0.2192 -4.8999 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 1.9026 -0.5283 4.4376 28 1 1.1494 0.5389 -2.5436 29 1 1.2368 -3.9366 -2.5426 30 1 4.0879 -1.4554 -2.7608 31 1 4.0878 -1.4560 -4.5406 32 1 5.3253 0.5004 -3.6517 33 1 3.8723 1.0149 -2.7612 34 1 4.0884 0.7081 -5.7903 35 1 4.0895 2.2495 -4.9008 36 1 1.8321 1.7369 -5.7900 37 1 1.8324 1.7368 -4.0102 38 1 2.0480 -0.7336 -5.7899 39 1 0.5954 -0.2185 -4.9000 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987796.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:05 Heat of formation + Delta-G solvation = -159.493420 kcal Electronic energy + Delta-G solvation = -22395.629274 eV Core-core repulsion = 19108.864867 eV Total energy + Delta-G solvation = -3286.764406 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.21256 -40.27002 -38.81836 -37.04505 -35.69664 -34.69202 -33.25445 -31.82963 -30.81386 -27.05981 -25.61925 -24.74895 -23.73448 -22.14409 -21.29771 -20.01837 -19.20658 -18.71159 -18.00575 -17.76218 -16.99874 -16.53414 -16.13048 -15.79939 -15.27476 -15.15624 -14.85643 -14.52320 -14.28641 -14.01152 -13.75175 -13.46983 -13.40241 -13.26590 -13.13534 -12.72887 -12.49613 -12.45266 -12.20724 -12.06964 -11.91599 -11.47264 -11.42916 -11.22855 -11.15240 -11.13797 -10.72128 -10.18993 -9.99117 -8.22359 -6.28755 1.05713 1.35799 1.41605 1.52798 1.94833 2.21395 2.33976 2.38145 3.12024 3.46109 3.67018 3.94425 4.15958 4.17075 4.24108 4.39327 4.46400 4.48274 4.48797 4.64712 4.66826 4.78164 4.82935 4.99306 5.07618 5.08610 5.20474 5.21641 5.30139 5.37117 5.48692 5.51631 5.52400 5.58909 5.60712 6.31762 6.73372 6.91640 6.98122 7.32879 7.65488 8.95205 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.006569 C = 0.005995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.226959 B = 4261.193767 C = 4669.159722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.006 4.006 3 H 0.067 0.933 4 C -0.511 4.511 5 H 0.033 0.967 6 C 0.005 3.995 7 N -0.955 5.955 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.303 1.303 11 H -0.228 1.228 12 C 0.530 3.470 13 O -0.534 6.534 14 N -0.715 5.715 15 C 0.194 3.806 16 C 0.474 3.526 17 O -0.546 6.546 18 O -0.489 6.489 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.116 4.116 22 C -0.115 4.115 23 C -0.105 4.105 24 H 0.043 0.957 25 H 0.083 0.917 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.415 0.585 29 H 0.406 0.594 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.786 8.172 -19.527 21.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 H 0.085 0.915 4 C -0.550 4.550 5 H 0.051 0.949 6 C -0.191 4.191 7 N -0.596 5.596 8 Si 0.781 3.219 9 H -0.191 1.191 10 H -0.231 1.231 11 H -0.151 1.151 12 C 0.317 3.683 13 O -0.408 6.408 14 N -0.373 5.373 15 C 0.105 3.895 16 C 0.317 3.683 17 O -0.437 6.437 18 O -0.298 6.298 19 C -0.166 4.166 20 C -0.149 4.149 21 C -0.153 4.153 22 C -0.152 4.152 23 C -0.142 4.142 24 H 0.062 0.938 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.253 0.747 29 H 0.265 0.735 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.203 7.690 -19.507 21.083 hybrid contribution -0.603 -0.652 0.967 1.313 sum -2.806 7.038 -18.540 20.029 Atomic orbital electron populations 1.22016 0.95002 1.01421 1.01251 1.19235 0.94998 0.97444 0.91137 0.91502 1.21109 1.31098 1.12626 0.90148 0.94852 1.25994 0.97552 1.00584 0.94994 1.70083 1.47958 1.42861 0.98652 0.85761 0.78693 0.79420 0.77989 1.19143 1.23087 1.15106 1.20847 0.79113 0.83776 0.84524 1.90572 1.37315 1.26482 1.86439 1.46029 1.55082 1.32744 1.03418 1.20259 0.95952 0.84535 0.88758 1.24476 0.72635 0.90454 0.80755 1.90645 1.48526 1.70482 1.34081 1.85087 1.77512 1.32145 1.35080 1.21905 0.91684 1.00215 1.02846 1.21452 1.00667 0.93197 0.99561 1.21569 0.95632 1.01164 0.96950 1.21582 0.95769 0.93878 1.03955 1.21737 1.01789 0.97038 0.93678 0.93759 0.89842 0.93926 0.92632 0.74671 0.73469 0.92452 0.90180 0.91181 0.92582 0.91005 0.90044 0.88500 0.90976 0.89114 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 8.57 71.98 0.62 -4.55 16 2 C -0.01 -0.28 2.23 -12.29 -0.03 -0.31 16 3 H 0.07 2.71 7.20 -2.39 -0.02 2.70 16 4 C -0.51 -29.75 8.96 25.60 0.23 -29.53 16 5 H 0.03 2.29 7.00 -2.91 -0.02 2.27 16 6 C 0.00 0.27 5.45 84.65 0.46 0.73 16 7 N -0.95 -60.94 13.96 21.45 0.30 -60.65 16 8 Si 0.96 42.58 24.37 68.60 1.67 44.25 16 9 H -0.27 -11.19 6.87 99.48 0.68 -10.50 16 10 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 11 H -0.23 -8.65 6.53 99.48 0.65 -8.00 16 12 C 0.53 21.40 6.08 87.66 0.53 21.94 16 13 O -0.53 -26.07 10.71 20.41 0.22 -25.85 16 14 N -0.71 -20.46 3.93 -426.34 -1.67 -22.13 16 15 C 0.19 5.19 0.63 2.85 0.00 5.20 16 16 C 0.47 15.30 7.08 71.23 0.50 15.80 16 17 O -0.55 -18.46 16.85 21.96 0.37 -18.09 16 18 O -0.49 -17.30 9.59 -43.66 -0.42 -17.72 16 19 C -0.13 -3.53 4.50 30.59 0.14 -3.40 16 20 C -0.11 -2.46 5.76 30.59 0.18 -2.28 16 21 C -0.12 -1.72 5.92 30.59 0.18 -1.54 16 22 C -0.11 -1.54 5.75 30.58 0.18 -1.37 16 23 C -0.10 -1.95 4.31 30.57 0.13 -1.82 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 25 H 0.08 2.22 7.56 -2.39 -0.02 2.20 16 26 H 0.04 1.63 3.27 -2.38 -0.01 1.62 16 27 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.41 9.00 6.74 -92.71 -0.62 8.38 16 29 H 0.41 10.97 9.10 -74.05 -0.67 10.30 16 30 H 0.06 2.08 6.17 -2.39 -0.01 2.06 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.41 7.60 -2.39 -0.02 1.39 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.94 6.86 -2.38 -0.02 0.92 16 38 H 0.09 1.70 7.87 -2.38 -0.02 1.69 16 39 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -78.30 299.83 3.29 -75.01 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.30 Total: 26.29 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 3.12 Total: -1.12 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -1.37 Total: -82.78 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: 0.17 Total: -61.65 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.67 Total: 44.25 kcal Total: -78.30 3.29 -75.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987796.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.485 kcal (2) G-P(sol) polarization free energy of solvation -78.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds