Wall clock time and date at job start Mon Mar 30 2020 01:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47190 * 2 1 4 4 C 1.50703 * 109.46944 * 120.00067 * 2 1 3 5 5 H 1.07993 * 120.00156 * 119.99875 * 4 2 1 6 6 C 1.37879 * 119.99996 * 299.99902 * 4 2 1 7 7 N 1.31520 * 119.99580 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00376 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47420 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47072 * 300.00588 * 8 6 4 11 11 H 1.48507 * 109.46845 * 59.99913 * 8 6 4 12 12 C 1.50705 * 109.47324 * 239.99557 * 2 1 3 13 13 O 1.21275 * 120.00306 * 260.42714 * 12 2 1 14 14 N 1.34780 * 119.99557 * 80.42415 * 12 2 1 15 15 C 1.46927 * 120.62947 * 5.26869 * 14 12 2 16 16 C 1.53190 * 108.77591 * 126.37006 * 15 14 12 17 17 C 1.53042 * 109.31640 * 54.62888 * 16 15 14 18 18 C 1.53045 * 109.53709 * 298.64164 * 17 16 15 19 19 C 1.46921 * 120.62870 * 184.98416 * 14 12 2 20 20 H 1.09005 * 109.58283 * 113.84288 * 19 14 12 21 21 C 1.52999 * 109.58620 * 353.42401 * 19 14 12 22 22 C 1.50698 * 109.47541 * 71.31070 * 21 19 14 23 23 O 1.20832 * 119.99576 * 359.97438 * 22 21 19 24 24 O 1.34228 * 120.00231 * 180.02562 * 22 21 19 25 25 H 1.08999 * 109.47112 * 54.29337 * 1 2 3 26 26 H 1.09005 * 109.47478 * 174.29183 * 1 2 3 27 27 H 1.09000 * 109.47466 * 294.29163 * 1 2 3 28 28 H 0.97009 * 119.99655 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.58204 * 246.15149 * 15 14 12 30 30 H 1.09001 * 109.59204 * 6.57596 * 15 14 12 31 31 H 1.08993 * 109.49845 * 174.58390 * 16 15 14 32 32 H 1.09005 * 109.49544 * 294.64936 * 16 15 14 33 33 H 1.09002 * 109.45593 * 58.65678 * 17 16 15 34 34 H 1.08998 * 109.46070 * 178.62930 * 17 16 15 35 35 H 1.09000 * 109.49457 * 181.31737 * 18 17 16 36 36 H 1.08997 * 109.49360 * 301.40683 * 18 17 16 37 37 H 1.09003 * 109.46964 * 191.31017 * 21 19 14 38 38 H 1.08998 * 109.47376 * 311.30364 * 21 19 14 39 39 H 0.96700 * 116.99881 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3211 -1.1203 4.0080 9 1 1.8257 -0.4205 5.2205 10 1 1.8256 -2.5202 4.0077 11 1 3.8062 -1.1209 4.0083 12 6 2.0324 -0.7105 -1.2304 13 8 2.3992 -1.8641 -1.1573 14 7 2.0740 -0.0638 -2.4122 15 6 1.7428 1.3652 -2.4956 16 6 2.8977 2.0997 -3.1836 17 6 3.1832 1.4407 -4.5350 18 6 3.5989 -0.0159 -4.3165 19 6 2.4573 -0.7730 -3.6405 20 1 1.6034 -0.8208 -4.3164 21 6 2.9192 -2.1894 -3.2921 22 6 1.7311 -3.0166 -2.8737 23 8 0.6280 -2.5237 -2.8555 24 8 1.8983 -4.3007 -2.5202 25 1 -0.3633 0.5998 -0.8345 26 1 -0.3634 -1.0226 -0.1022 27 1 -0.3634 0.4227 0.9367 28 1 0.7080 1.1609 3.4844 29 1 0.8295 1.4953 -3.0762 30 1 1.6005 1.7666 -1.4922 31 1 2.6244 3.1434 -3.3382 32 1 3.7879 2.0458 -2.5568 33 1 2.2851 1.4734 -5.1518 34 1 3.9885 1.9766 -5.0374 35 1 3.8246 -0.4778 -5.2777 36 1 4.4826 -0.0503 -3.6794 37 1 3.3888 -2.6433 -4.1647 38 1 3.6381 -2.1462 -2.4740 39 1 1.1067 -4.7907 -2.2590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:26 Heat of formation + Delta-G solvation = -119.761144 kcal Electronic energy + Delta-G solvation = -22513.484587 eV Core-core repulsion = 19228.443101 eV Total energy + Delta-G solvation = -3285.041486 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.59249 -38.81335 -36.91610 -35.41057 -34.08533 -32.55870 -32.39195 -30.07257 -28.16973 -25.14271 -24.75978 -23.10268 -22.35862 -20.48124 -20.29669 -18.28166 -17.40421 -16.49372 -16.15726 -16.00293 -15.41087 -15.06037 -14.55113 -14.49058 -14.17242 -13.50189 -13.35726 -12.94553 -12.69139 -12.49730 -12.16869 -11.99461 -11.97258 -11.41384 -10.99648 -10.97494 -10.88584 -10.81855 -10.67528 -10.61038 -10.50355 -10.42308 -10.18847 -9.96570 -9.83274 -8.96341 -8.44362 -8.06042 -8.03249 -6.02399 -4.06028 2.91337 3.35385 3.38263 3.42701 3.58717 3.67042 3.87197 4.46004 4.75878 4.90938 4.95953 5.22777 5.26176 5.30469 5.44374 5.54389 5.66812 5.75290 5.85535 5.91317 5.97537 6.06381 6.12898 6.15714 6.24055 6.29877 6.47981 6.71432 6.94799 7.02591 7.14307 7.21086 7.47313 7.79877 7.97712 8.12761 8.37663 8.63155 8.99417 9.17942 9.58436 11.04607 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.007588 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.394495 B = 3689.384660 C = 4573.839165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.032 3.968 3 H 0.048 0.952 4 C -0.499 4.499 5 H 0.070 0.930 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.900 3.100 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.541 3.459 13 O -0.551 6.551 14 N -0.612 5.612 15 C 0.108 3.892 16 C -0.136 4.136 17 C -0.116 4.116 18 C -0.130 4.130 19 C 0.156 3.844 20 H 0.073 0.927 21 C -0.104 4.104 22 C 0.516 3.484 23 O -0.540 6.540 24 O -0.523 6.523 25 H 0.013 0.987 26 H 0.030 0.970 27 H 0.094 0.906 28 H 0.261 0.739 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.130 0.870 39 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 0.687 -13.977 14.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.011 3.989 3 H 0.065 0.935 4 C -0.537 4.537 5 H 0.088 0.912 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.336 3.664 13 O -0.432 6.432 14 N -0.346 5.346 15 C -0.015 4.015 16 C -0.175 4.175 17 C -0.154 4.154 18 C -0.169 4.169 19 C 0.052 3.948 20 H 0.091 0.909 21 C -0.141 4.141 22 C 0.361 3.639 23 O -0.431 6.431 24 O -0.334 6.334 25 H 0.032 0.968 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.148 0.852 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.785 0.560 -13.899 14.416 hybrid contribution -0.306 -0.660 1.005 1.241 sum 3.479 -0.100 -12.895 13.356 Atomic orbital electron populations 1.21654 0.95935 0.99237 1.01672 1.18894 0.94365 0.96471 0.89151 0.93465 1.21048 1.31052 1.12534 0.89080 0.91233 1.24936 0.95137 0.95074 0.99046 1.69862 1.36924 1.23066 1.23626 0.86521 0.79160 0.79797 0.81732 1.21339 1.20230 1.20253 1.21903 0.73652 0.86772 0.84120 1.90280 1.49475 1.18877 1.84557 1.48198 1.69146 1.10100 1.07132 1.21765 0.96520 0.80313 1.02925 1.21949 0.99669 0.99214 0.96642 1.21481 1.01276 0.95262 0.97350 1.21904 0.98474 0.95952 1.00544 1.20852 0.96667 0.89875 0.87377 0.90910 1.21697 0.96909 0.92359 1.03164 1.22599 0.90143 0.79394 0.71717 1.90664 1.27904 1.71615 1.52924 1.84462 1.43470 1.25837 1.79591 0.96794 0.95099 0.88741 0.92886 0.92087 0.88199 0.90923 0.91303 0.91899 0.91853 0.91016 0.91180 0.90427 0.85180 0.74338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.94 37.16 0.33 -2.82 16 2 C 0.03 0.81 1.80 -92.92 -0.17 0.64 16 3 H 0.05 1.20 6.28 -51.93 -0.33 0.88 16 4 C -0.50 -14.17 8.34 -34.44 -0.29 -14.46 16 5 H 0.07 2.07 6.94 -52.49 -0.36 1.70 16 6 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 7 N -0.90 -25.25 11.29 55.43 0.63 -24.62 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 C 0.54 12.43 5.76 -10.98 -0.06 12.37 16 13 O -0.55 -13.53 9.21 -20.97 -0.19 -13.73 16 14 N -0.61 -11.22 2.87 -165.48 -0.48 -11.70 16 15 C 0.11 1.67 5.83 -3.71 -0.02 1.65 16 16 C -0.14 -1.65 6.08 -26.61 -0.16 -1.81 16 17 C -0.12 -1.22 5.89 -26.69 -0.16 -1.38 16 18 C -0.13 -1.52 5.32 -26.83 -0.14 -1.66 16 19 C 0.16 2.41 2.44 -67.83 -0.17 2.24 16 20 H 0.07 1.14 7.74 -51.93 -0.40 0.74 16 21 C -0.10 -1.69 4.80 -27.88 -0.13 -1.82 16 22 C 0.52 9.89 5.38 36.00 0.19 10.09 16 23 O -0.54 -11.90 15.33 -25.86 -0.40 -12.30 16 24 O -0.52 -8.94 13.42 -43.20 -0.58 -9.52 16 25 H 0.01 0.29 7.61 -51.93 -0.40 -0.10 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.09 2.52 5.94 -51.93 -0.31 2.22 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.10 1.71 5.36 -51.93 -0.28 1.43 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 38 H 0.13 2.39 6.18 -51.93 -0.32 2.07 16 39 H 0.40 5.34 9.10 45.56 0.41 5.75 16 LS Contribution 305.56 15.07 4.60 4.60 Total: -1.00 -33.06 305.56 -7.22 -40.28 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -4.92 Total: 5.50 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.87 Total: 4.57 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.15 Total: -36.32 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -1.17 Total: -35.55 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.06 -7.22 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.478 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds