Wall clock time and date at job start Mon Mar 30 2020 01:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47190 * 2 1 4 4 C 1.50703 * 109.46944 * 120.00067 * 2 1 3 5 5 H 1.07993 * 120.00156 * 119.99875 * 4 2 1 6 6 C 1.37879 * 119.99996 * 299.99902 * 4 2 1 7 7 N 1.31520 * 119.99580 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00376 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47420 * 180.02562 * 8 6 4 10 10 H 1.48500 * 109.47072 * 300.00588 * 8 6 4 11 11 H 1.48507 * 109.46845 * 59.99913 * 8 6 4 12 12 C 1.50705 * 109.47324 * 239.99557 * 2 1 3 13 13 O 1.21275 * 120.00306 * 260.42714 * 12 2 1 14 14 N 1.34780 * 119.99557 * 80.42415 * 12 2 1 15 15 C 1.46927 * 120.62947 * 5.26869 * 14 12 2 16 16 C 1.53190 * 108.77591 * 126.37006 * 15 14 12 17 17 C 1.53042 * 109.31640 * 54.62888 * 16 15 14 18 18 C 1.53045 * 109.53709 * 298.64164 * 17 16 15 19 19 C 1.46921 * 120.62870 * 184.98416 * 14 12 2 20 20 H 1.09005 * 109.58283 * 113.84288 * 19 14 12 21 21 C 1.52999 * 109.58620 * 353.42401 * 19 14 12 22 22 C 1.50698 * 109.47541 * 71.31070 * 21 19 14 23 23 O 1.20832 * 119.99576 * 359.97438 * 22 21 19 24 24 O 1.34228 * 120.00231 * 180.02562 * 22 21 19 25 25 H 1.08999 * 109.47112 * 54.29337 * 1 2 3 26 26 H 1.09005 * 109.47478 * 174.29183 * 1 2 3 27 27 H 1.09000 * 109.47466 * 294.29163 * 1 2 3 28 28 H 0.97009 * 119.99655 * 179.97438 * 7 6 4 29 29 H 1.09003 * 109.58204 * 246.15149 * 15 14 12 30 30 H 1.09001 * 109.59204 * 6.57596 * 15 14 12 31 31 H 1.08993 * 109.49845 * 174.58390 * 16 15 14 32 32 H 1.09005 * 109.49544 * 294.64936 * 16 15 14 33 33 H 1.09002 * 109.45593 * 58.65678 * 17 16 15 34 34 H 1.08998 * 109.46070 * 178.62930 * 17 16 15 35 35 H 1.09000 * 109.49457 * 181.31737 * 18 17 16 36 36 H 1.08997 * 109.49360 * 301.40683 * 18 17 16 37 37 H 1.09003 * 109.46964 * 191.31017 * 21 19 14 38 38 H 1.08998 * 109.47376 * 311.30364 * 21 19 14 39 39 H 0.96700 * 116.99881 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4828 7 7 0.9427 0.8297 2.6033 8 14 2.3211 -1.1203 4.0080 9 1 1.8257 -0.4205 5.2205 10 1 1.8256 -2.5202 4.0077 11 1 3.8062 -1.1209 4.0083 12 6 2.0324 -0.7105 -1.2304 13 8 2.3992 -1.8641 -1.1573 14 7 2.0740 -0.0638 -2.4122 15 6 1.7428 1.3652 -2.4956 16 6 2.8977 2.0997 -3.1836 17 6 3.1832 1.4407 -4.5350 18 6 3.5989 -0.0159 -4.3165 19 6 2.4573 -0.7730 -3.6405 20 1 1.6034 -0.8208 -4.3164 21 6 2.9192 -2.1894 -3.2921 22 6 1.7311 -3.0166 -2.8737 23 8 0.6280 -2.5237 -2.8555 24 8 1.8983 -4.3007 -2.5202 25 1 -0.3633 0.5998 -0.8345 26 1 -0.3634 -1.0226 -0.1022 27 1 -0.3634 0.4227 0.9367 28 1 0.7080 1.1609 3.4844 29 1 0.8295 1.4953 -3.0762 30 1 1.6005 1.7666 -1.4922 31 1 2.6244 3.1434 -3.3382 32 1 3.7879 2.0458 -2.5568 33 1 2.2851 1.4734 -5.1518 34 1 3.9885 1.9766 -5.0374 35 1 3.8246 -0.4778 -5.2777 36 1 4.4826 -0.0503 -3.6794 37 1 3.3888 -2.6433 -4.1647 38 1 3.6381 -2.1462 -2.4740 39 1 1.1067 -4.7907 -2.2590 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988076.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:25 Heat of formation + Delta-G solvation = -141.219242 kcal Electronic energy + Delta-G solvation = -22514.415080 eV Core-core repulsion = 19228.443101 eV Total energy + Delta-G solvation = -3285.971979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06661 -40.29358 -38.32677 -36.88145 -36.00325 -34.10751 -33.61402 -31.98535 -29.38658 -27.29004 -26.10427 -24.58079 -23.79037 -21.97388 -21.42578 -19.85535 -18.87964 -18.40855 -17.75860 -17.40249 -16.95422 -16.82377 -16.29278 -15.73378 -15.30940 -14.97079 -14.67447 -14.43683 -14.32751 -14.09863 -13.60007 -13.45597 -13.23892 -13.06184 -12.92509 -12.70569 -12.51492 -12.36565 -12.16063 -12.08607 -12.03053 -11.78794 -11.61321 -11.48801 -11.34246 -11.04510 -10.55205 -9.79398 -9.44989 -8.16654 -6.27503 1.37136 1.38379 1.40914 1.48698 2.14051 2.16184 2.43900 2.45519 3.12347 3.58276 3.89491 4.00276 4.14508 4.22083 4.24780 4.33670 4.44483 4.58822 4.61402 4.70999 4.82866 4.92131 4.93414 4.97541 5.02422 5.07557 5.12778 5.21807 5.25414 5.41442 5.51540 5.67559 5.75897 5.85460 5.91871 6.17568 6.58268 6.79188 7.22900 7.37498 7.49586 8.88948 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018400 B = 0.007588 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.394495 B = 3689.384660 C = 4573.839165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.028 3.972 3 H 0.042 0.958 4 C -0.524 4.524 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.272 1.272 12 C 0.534 3.466 13 O -0.577 6.577 14 N -0.606 5.606 15 C 0.099 3.901 16 C -0.130 4.130 17 C -0.112 4.112 18 C -0.123 4.123 19 C 0.151 3.849 20 H 0.076 0.924 21 C -0.103 4.103 22 C 0.508 3.492 23 O -0.576 6.576 24 O -0.523 6.523 25 H 0.037 0.963 26 H 0.007 0.993 27 H 0.074 0.926 28 H 0.265 0.735 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.106 0.894 36 H 0.062 0.938 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 1.347 -15.808 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.007 3.993 3 H 0.060 0.940 4 C -0.562 4.562 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.197 1.197 12 C 0.327 3.673 13 O -0.461 6.461 14 N -0.338 5.338 15 C -0.023 4.023 16 C -0.168 4.168 17 C -0.149 4.149 18 C -0.161 4.161 19 C 0.048 3.952 20 H 0.094 0.906 21 C -0.140 4.140 22 C 0.356 3.644 23 O -0.470 6.470 24 O -0.335 6.335 25 H 0.056 0.944 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.124 0.876 36 H 0.081 0.919 37 H 0.140 0.860 38 H 0.126 0.874 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 4.810 1.240 -15.763 16.528 hybrid contribution -0.662 -0.883 1.542 1.896 sum 4.149 0.357 -14.221 14.818 Atomic orbital electron populations 1.21431 0.96026 0.97877 1.01498 1.18789 0.94306 0.96134 0.90038 0.94038 1.21198 1.31605 1.12417 0.91018 0.93453 1.25614 0.95217 0.95754 1.01461 1.69943 1.37081 1.23645 1.24383 0.85647 0.78863 0.78501 0.78834 1.19900 1.20621 1.19673 1.21369 0.74382 0.86462 0.85067 1.90276 1.50731 1.19668 1.85385 1.48176 1.67669 1.11179 1.06812 1.21978 0.98936 0.79013 1.02409 1.21921 0.97440 1.00281 0.97152 1.21503 1.02783 0.94331 0.96326 1.21910 0.96225 0.96529 1.01449 1.21170 0.98377 0.89719 0.85930 0.90626 1.21737 0.95312 0.92876 1.04065 1.23294 0.90527 0.79739 0.70830 1.90634 1.29469 1.72344 1.54543 1.84439 1.44431 1.25447 1.79188 0.94429 0.97339 0.90722 0.92555 0.90687 0.90586 0.88451 0.92558 0.90773 0.89164 0.87607 0.91909 0.85976 0.87399 0.72820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.65 8.94 71.98 0.64 -5.01 16 2 C 0.03 1.48 1.80 -12.28 -0.02 1.45 16 3 H 0.04 2.19 6.28 -2.39 -0.02 2.18 16 4 C -0.52 -30.78 8.34 25.60 0.21 -30.57 16 5 H 0.05 2.93 6.94 -2.91 -0.02 2.91 16 6 C 0.02 1.06 5.29 84.65 0.45 1.50 16 7 N -0.91 -52.08 11.29 21.45 0.24 -51.83 16 8 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 C 0.53 25.11 5.76 87.66 0.50 25.62 16 13 O -0.58 -29.17 9.21 22.36 0.21 -28.96 16 14 N -0.61 -21.96 2.87 -795.84 -2.29 -24.24 16 15 C 0.10 2.96 5.83 86.36 0.50 3.46 16 16 C -0.13 -2.81 6.08 30.67 0.19 -2.62 16 17 C -0.11 -1.89 5.89 30.62 0.18 -1.71 16 18 C -0.12 -2.42 5.32 30.53 0.16 -2.26 16 19 C 0.15 4.36 2.44 44.83 0.11 4.46 16 20 H 0.08 2.19 7.74 -2.38 -0.02 2.17 16 21 C -0.10 -3.20 4.80 29.85 0.14 -3.05 16 22 C 0.51 19.41 5.38 71.24 0.38 19.79 16 23 O -0.58 -25.61 15.33 28.74 0.44 -25.17 16 24 O -0.52 -17.80 13.42 -47.62 -0.64 -18.43 16 25 H 0.04 1.67 7.61 -2.39 -0.02 1.66 16 26 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.07 4.11 5.94 -2.39 -0.01 4.09 16 28 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 29 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.63 5.36 -2.39 -0.01 2.62 16 31 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.12 2.67 8.11 -2.39 -0.02 2.65 16 38 H 0.11 3.95 6.18 -2.39 -0.01 3.94 16 39 H 0.41 11.08 9.10 -74.06 -0.67 10.41 16 Total: -1.00 -73.61 305.56 3.83 -69.77 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.39 Total: 20.32 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 3.46 Total: 11.08 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.04 Total: -76.08 kcal Atomic # 8 Polarization: -72.58 SS G_CDS: 0.01 Total: -72.57 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -73.61 3.83 -69.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988076.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.447 kcal (2) G-P(sol) polarization free energy of solvation -73.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds