Wall clock time and date at job start Mon Mar 30 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47162 * 2 1 4 4 C 1.50699 * 109.47100 * 239.99627 * 2 1 3 5 5 H 1.07998 * 119.99942 * 240.00245 * 4 2 1 6 6 C 1.37881 * 119.99816 * 59.99970 * 4 2 1 7 7 N 1.31517 * 120.00170 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99721 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47382 * 90.00683 * 8 6 4 10 10 H 1.48509 * 109.47255 * 210.00242 * 8 6 4 11 11 H 1.48502 * 109.47419 * 330.00031 * 8 6 4 12 12 C 1.50696 * 109.46671 * 119.99644 * 2 1 3 13 13 O 1.21283 * 119.99700 * 120.00108 * 12 2 1 14 14 N 1.34776 * 120.00544 * 299.99710 * 12 2 1 15 15 C 1.46495 * 120.00349 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47426 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.47193 * 55.00057 * 16 15 14 18 18 C 1.50706 * 109.46819 * 295.00385 * 16 15 14 19 19 O 1.20825 * 119.99859 * 239.99256 * 18 16 15 20 20 O 1.34224 * 120.00295 * 60.00215 * 18 16 15 21 21 C 1.52996 * 109.47342 * 175.00321 * 16 15 14 22 22 C 1.53785 * 113.61457 * 277.49798 * 21 16 15 23 23 C 1.53778 * 87.08118 * 220.02176 * 22 21 16 24 24 C 1.53785 * 87.08459 * 25.43161 * 23 22 21 25 25 H 1.09003 * 109.47396 * 300.00447 * 1 2 3 26 26 H 1.09007 * 109.47268 * 60.00247 * 1 2 3 27 27 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 28 28 H 0.96994 * 120.00023 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99821 * 0.02562 * 14 12 2 30 30 H 1.08998 * 109.47206 * 60.00235 * 15 14 12 31 31 H 1.09004 * 109.47099 * 300.00505 * 15 14 12 32 32 H 0.96700 * 117.00196 * 179.97438 * 20 18 16 33 33 H 1.08998 * 112.85142 * 48.80487 * 21 16 15 34 34 H 1.09003 * 113.60829 * 334.56783 * 22 21 16 35 35 H 1.08992 * 113.61732 * 105.46636 * 22 21 16 36 36 H 1.09002 * 113.61284 * 270.88528 * 23 22 21 37 37 H 1.09000 * 113.69591 * 139.99367 * 23 22 21 38 38 H 1.09003 * 113.61298 * 220.02493 * 24 23 22 39 39 H 1.08998 * 113.61335 * 89.11551 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0322 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1945 -0.9407 3.6508 16 6 1.6841 -0.2198 4.9000 17 1 0.5979 -0.1414 4.8560 18 6 2.2851 1.1608 4.9639 19 8 2.9668 1.4797 5.9092 20 8 2.0631 2.0361 3.9709 21 6 2.0884 -1.0102 6.1460 22 6 1.1396 -2.1762 6.4706 23 6 1.2963 -1.7884 7.9504 24 6 1.6209 -0.3667 7.4622 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7095 1.1617 -3.4844 29 1 1.1488 0.5387 2.5436 30 1 3.2844 -0.9412 3.6510 31 1 1.8307 -1.9683 3.6506 32 1 2.4692 2.9095 4.0565 33 1 3.1419 -1.2897 6.1467 34 1 0.1289 -2.0362 6.0872 35 1 1.5530 -3.1555 6.2296 36 1 2.1330 -2.2819 8.4449 37 1 0.3696 -1.8533 8.5207 38 1 2.4230 0.1146 8.0219 39 1 0.7418 0.2678 7.3500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588988134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:41 Heat of formation + Delta-G solvation = -125.873238 kcal Electronic energy + Delta-G solvation = -21030.859412 eV Core-core repulsion = 17745.552886 eV Total energy + Delta-G solvation = -3285.306526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82376 -38.80759 -38.57185 -36.09806 -34.72269 -33.68550 -31.41565 -30.03945 -25.97167 -25.25121 -25.05746 -24.27195 -22.21539 -20.73217 -19.81371 -19.18496 -18.04964 -16.94163 -16.47447 -16.06519 -15.66697 -15.41366 -15.09222 -14.48900 -14.40303 -14.23430 -13.50013 -12.93841 -12.73867 -12.63154 -12.55123 -12.22354 -11.89797 -11.74634 -11.47111 -11.42864 -10.99857 -10.90108 -10.74879 -10.68541 -10.64124 -10.44883 -10.26037 -10.20189 -9.92851 -8.93703 -8.58601 -8.42494 -8.29109 -6.00270 -4.03092 2.12889 2.91771 3.35566 3.41170 3.48134 3.77535 3.80470 4.34383 4.44826 4.46283 4.54384 4.66724 4.82167 5.01133 5.04492 5.30128 5.33081 5.52930 5.56232 5.58774 5.72593 5.79413 5.83630 5.91065 6.03583 6.27308 6.32248 6.45791 6.66182 6.86854 6.96762 7.09637 7.52008 7.78997 7.83659 8.02818 8.19689 8.50159 9.06060 9.28307 9.62352 11.07350 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033285 B = 0.004106 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.014689 B = 6817.599908 C = 7185.324270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.549 6.549 14 N -0.744 5.744 15 C 0.130 3.870 16 C -0.083 4.083 17 H 0.114 0.886 18 C 0.485 3.515 19 O -0.514 6.514 20 O -0.509 6.509 21 C -0.093 4.093 22 C -0.134 4.134 23 C -0.144 4.144 24 C -0.126 4.126 25 H 0.012 0.988 26 H 0.092 0.908 27 H 0.030 0.970 28 H 0.260 0.740 29 H 0.402 0.598 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.410 0.590 33 H 0.100 0.900 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 0.525 18.548 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.310 3.690 13 O -0.425 6.425 14 N -0.401 5.401 15 C 0.006 3.994 16 C -0.102 4.102 17 H 0.132 0.868 18 C 0.327 3.673 19 O -0.402 6.402 20 O -0.321 6.321 21 C -0.112 4.112 22 C -0.171 4.171 23 C -0.182 4.182 24 C -0.163 4.163 25 H 0.031 0.969 26 H 0.111 0.889 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.238 0.762 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.270 0.730 33 H 0.118 0.882 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.731 -0.385 18.529 18.613 hybrid contribution 0.297 0.648 -0.727 1.018 sum -1.433 0.263 17.802 17.861 Atomic orbital electron populations 1.21737 0.96573 0.99738 1.00918 1.18859 0.94133 0.96871 0.89283 0.92948 1.21162 1.30868 1.12748 0.89048 0.90820 1.24948 0.95175 0.95070 0.99081 1.69873 1.37261 1.23081 1.23458 0.86463 0.79456 0.79236 0.82110 1.20701 1.21340 1.19772 1.21971 0.78391 0.84203 0.84458 1.90530 1.38076 1.27028 1.86846 1.46350 1.55792 1.32778 1.05152 1.21076 0.99387 0.96464 0.82505 1.21470 1.02499 0.88494 0.97753 0.86799 1.23389 0.77679 0.87255 0.78965 1.90693 1.36951 1.78642 1.33889 1.84539 1.71685 1.28043 1.47817 1.22422 1.00803 0.96185 0.91797 1.22991 0.99711 0.98128 0.96304 1.22836 1.01814 0.97170 0.96351 1.22858 1.01241 0.96131 0.96087 0.96882 0.88910 0.95057 0.93021 0.76241 0.91759 0.90380 0.73043 0.88161 0.89684 0.90869 0.90150 0.91409 0.90763 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.00 8.87 37.16 0.33 -2.68 16 2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16 3 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.50 -14.24 8.37 -34.44 -0.29 -14.53 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.19 11.32 55.43 0.63 -24.56 16 8 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.52 11.82 7.15 -10.99 -0.08 11.74 16 13 O -0.55 -14.31 15.46 5.56 0.09 -14.22 16 14 N -0.74 -12.70 4.95 -60.30 -0.30 -13.00 16 15 C 0.13 1.85 5.05 -4.05 -0.02 1.83 16 16 C -0.08 -0.90 2.12 -91.77 -0.19 -1.09 16 17 H 0.11 1.07 7.94 -51.93 -0.41 0.66 16 18 C 0.48 5.81 7.43 36.01 0.27 6.08 16 19 O -0.51 -7.15 15.61 -18.75 -0.29 -7.44 16 20 O -0.51 -5.49 11.42 -39.24 -0.45 -5.93 16 21 C -0.09 -0.91 2.72 -89.80 -0.24 -1.15 16 22 C -0.13 -1.11 7.63 -25.92 -0.20 -1.31 16 23 C -0.14 -1.12 8.08 -25.92 -0.21 -1.33 16 24 C -0.13 -1.15 6.19 -25.91 -0.16 -1.31 16 25 H 0.01 0.24 7.56 -51.93 -0.39 -0.16 16 26 H 0.09 2.34 6.07 -51.92 -0.32 2.02 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.40 6.14 6.36 -40.82 -0.26 5.88 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.41 2.83 9.10 45.56 0.41 3.25 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.66 7.96 -51.93 -0.41 0.25 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.76 7.97 -51.93 -0.41 0.34 16 39 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 322.45 15.07 4.86 4.86 Total: -1.00 -33.11 322.45 -6.71 -39.82 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.08 Total: 5.37 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -1.14 Total: -1.75 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.33 Total: -37.56 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.65 Total: -27.60 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.11 -6.71 -39.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.055 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds