Wall clock time and date at job start Mon Mar 30 2020 01:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47162 * 2 1 4 4 C 1.50699 * 109.47100 * 239.99627 * 2 1 3 5 5 H 1.07998 * 119.99942 * 240.00245 * 4 2 1 6 6 C 1.37881 * 119.99816 * 59.99970 * 4 2 1 7 7 N 1.31517 * 120.00170 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 119.99721 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47382 * 90.00683 * 8 6 4 10 10 H 1.48509 * 109.47255 * 210.00242 * 8 6 4 11 11 H 1.48502 * 109.47419 * 330.00031 * 8 6 4 12 12 C 1.50696 * 109.46671 * 119.99644 * 2 1 3 13 13 O 1.21283 * 119.99700 * 120.00108 * 12 2 1 14 14 N 1.34776 * 120.00544 * 299.99710 * 12 2 1 15 15 C 1.46495 * 120.00349 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47426 * 180.02562 * 15 14 12 17 17 H 1.08997 * 109.47193 * 55.00057 * 16 15 14 18 18 C 1.50706 * 109.46819 * 295.00385 * 16 15 14 19 19 O 1.20825 * 119.99859 * 239.99256 * 18 16 15 20 20 O 1.34224 * 120.00295 * 60.00215 * 18 16 15 21 21 C 1.52996 * 109.47342 * 175.00321 * 16 15 14 22 22 C 1.53785 * 113.61457 * 277.49798 * 21 16 15 23 23 C 1.53778 * 87.08118 * 220.02176 * 22 21 16 24 24 C 1.53785 * 87.08459 * 25.43161 * 23 22 21 25 25 H 1.09003 * 109.47396 * 300.00447 * 1 2 3 26 26 H 1.09007 * 109.47268 * 60.00247 * 1 2 3 27 27 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 28 28 H 0.96994 * 120.00023 * 179.97438 * 7 6 4 29 29 H 0.97005 * 119.99821 * 0.02562 * 14 12 2 30 30 H 1.08998 * 109.47206 * 60.00235 * 15 14 12 31 31 H 1.09004 * 109.47099 * 300.00505 * 15 14 12 32 32 H 0.96700 * 117.00196 * 179.97438 * 20 18 16 33 33 H 1.08998 * 112.85142 * 48.80487 * 21 16 15 34 34 H 1.09003 * 113.60829 * 334.56783 * 22 21 16 35 35 H 1.08992 * 113.61732 * 105.46636 * 22 21 16 36 36 H 1.09002 * 113.61284 * 270.88528 * 23 22 21 37 37 H 1.09000 * 113.69591 * 139.99367 * 23 22 21 38 38 H 1.09003 * 113.61298 * 220.02493 * 24 23 22 39 39 H 1.08998 * 113.61335 * 89.11551 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3225 -1.1197 -4.0078 9 1 1.3448 -2.1617 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6309 -1.7568 -3.7118 12 6 2.0322 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1945 -0.9407 3.6508 16 6 1.6841 -0.2198 4.9000 17 1 0.5979 -0.1414 4.8560 18 6 2.2851 1.1608 4.9639 19 8 2.9668 1.4797 5.9092 20 8 2.0631 2.0361 3.9709 21 6 2.0884 -1.0102 6.1460 22 6 1.1396 -2.1762 6.4706 23 6 1.2963 -1.7884 7.9504 24 6 1.6209 -0.3667 7.4622 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7095 1.1617 -3.4844 29 1 1.1488 0.5387 2.5436 30 1 3.2844 -0.9412 3.6510 31 1 1.8307 -1.9683 3.6506 32 1 2.4692 2.9095 4.0565 33 1 3.1419 -1.2897 6.1467 34 1 0.1289 -2.0362 6.0872 35 1 1.5530 -3.1555 6.2296 36 1 2.1330 -2.2819 8.4449 37 1 0.3696 -1.8533 8.5207 38 1 2.4230 0.1146 8.0219 39 1 0.7418 0.2678 7.3500 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588988134.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:41 Heat of formation + Delta-G solvation = -148.278562 kcal Electronic energy + Delta-G solvation = -21031.830980 eV Core-core repulsion = 17745.552886 eV Total energy + Delta-G solvation = -3286.278094 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.77602 -40.37614 -39.48516 -37.05399 -36.10867 -35.70242 -32.99274 -31.67748 -27.19603 -26.79399 -26.20051 -25.19711 -23.94671 -21.66425 -21.14588 -20.26482 -19.04484 -18.34784 -17.87116 -17.77689 -16.96496 -16.58776 -16.33822 -15.92503 -15.87697 -15.41231 -14.81563 -14.59002 -14.27935 -13.70939 -13.56536 -13.30197 -13.25865 -12.94288 -12.72909 -12.63635 -12.61604 -12.53644 -12.42336 -12.16105 -11.99938 -11.70511 -11.51409 -11.18704 -11.03719 -10.99637 -10.57098 -10.26300 -9.95216 -8.12451 -6.22490 1.17446 1.42216 1.42953 1.54711 1.97268 2.07630 2.34820 2.53285 3.17111 3.47485 3.63552 3.73984 3.93394 4.01371 4.13593 4.26337 4.42022 4.44345 4.68284 4.76970 4.81600 4.87572 4.92704 4.96996 5.00628 5.07808 5.15005 5.20012 5.34127 5.54226 5.56889 5.61105 5.64640 5.78705 5.98447 6.25607 6.77012 6.88908 7.01881 7.43000 7.58451 8.93236 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033285 B = 0.004106 C = 0.003896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.014689 B = 6817.599908 C = 7185.324270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.529 4.529 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.276 1.276 11 H -0.280 1.280 12 C 0.522 3.478 13 O -0.589 6.589 14 N -0.721 5.721 15 C 0.132 3.868 16 C -0.072 4.072 17 H 0.138 0.862 18 C 0.486 3.514 19 O -0.535 6.535 20 O -0.513 6.513 21 C -0.099 4.099 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.125 4.125 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.024 0.976 28 H 0.264 0.736 29 H 0.413 0.587 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.427 0.573 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.059 0.941 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.269 0.601 19.414 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.205 1.205 12 C 0.311 3.689 13 O -0.469 6.469 14 N -0.376 5.376 15 C 0.008 3.992 16 C -0.091 4.091 17 H 0.155 0.845 18 C 0.329 3.671 19 O -0.425 6.425 20 O -0.327 6.327 21 C -0.118 4.118 22 C -0.168 4.168 23 C -0.174 4.174 24 C -0.162 4.162 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.251 0.749 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.289 0.711 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.078 0.922 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.842 -0.260 19.426 19.635 hybrid contribution 0.653 0.695 -0.961 1.354 sum -2.189 0.435 18.465 18.600 Atomic orbital electron populations 1.21549 0.94905 0.99487 1.01729 1.18803 0.95480 0.95898 0.89584 0.94150 1.21309 1.31517 1.12690 0.91206 0.93391 1.25577 0.95247 0.95742 1.01349 1.69948 1.37304 1.23513 1.24233 0.85620 0.78628 0.78555 0.79217 1.19926 1.20068 1.20476 1.21517 0.78171 0.83625 0.85612 1.90510 1.40013 1.28783 1.87602 1.46040 1.54536 1.32595 1.04451 1.21183 0.98689 0.96970 0.82386 1.21465 1.03654 0.87641 0.96347 0.84460 1.23566 0.77168 0.87672 0.78722 1.90693 1.37847 1.79169 1.34799 1.84493 1.71741 1.29119 1.47319 1.22466 1.00762 0.97034 0.91504 1.23016 0.99725 0.97453 0.96562 1.22814 1.02533 0.95853 0.96238 1.22846 1.00945 0.96951 0.95492 0.92842 0.91222 0.95702 0.92649 0.74861 0.93127 0.89867 0.71130 0.89182 0.88652 0.90750 0.89875 0.90143 0.92171 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.87 71.98 0.64 -4.66 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.14 16 3 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.53 -30.63 8.37 25.60 0.21 -30.42 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -50.90 11.32 21.45 0.24 -50.66 16 8 Si 0.95 44.90 29.54 68.60 2.03 46.93 16 9 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 12 C 0.52 23.62 7.15 87.66 0.63 24.25 16 13 O -0.59 -31.18 15.46 -3.04 -0.05 -31.23 16 14 N -0.72 -23.56 4.95 -463.08 -2.29 -25.86 16 15 C 0.13 3.55 5.05 86.38 0.44 3.98 16 16 C -0.07 -1.41 2.12 -11.54 -0.02 -1.43 16 17 H 0.14 2.10 7.94 -2.39 -0.02 2.08 16 18 C 0.49 10.83 7.43 71.24 0.53 11.36 16 19 O -0.54 -14.31 15.61 21.97 0.34 -13.97 16 20 O -0.51 -10.04 11.42 -51.35 -0.59 -10.63 16 21 C -0.10 -1.76 2.72 -10.27 -0.03 -1.79 16 22 C -0.13 -1.85 7.63 31.12 0.24 -1.61 16 23 C -0.14 -1.81 8.08 31.12 0.25 -1.56 16 24 C -0.12 -2.07 6.19 31.12 0.19 -1.87 16 25 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 26 H 0.07 3.46 6.07 -2.38 -0.01 3.45 16 27 H 0.02 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.41 11.64 6.36 -92.70 -0.59 11.05 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 32 H 0.43 5.13 9.10 -74.06 -0.67 4.46 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.18 7.96 -2.39 -0.02 1.16 16 35 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 1.17 7.97 -2.39 -0.02 1.15 16 39 H 0.08 1.26 8.10 -2.39 -0.02 1.24 16 Total: -1.00 -71.31 322.45 2.98 -68.33 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: -0.20 Total: 18.12 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 3.49 Total: -1.04 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -2.05 Total: -76.51 kcal Atomic # 8 Polarization: -55.54 SS G_CDS: -0.29 Total: -55.83 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -71.31 2.98 -68.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588988134.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.947 kcal (2) G-P(sol) polarization free energy of solvation -71.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds