Wall clock time and date at job start Mon Mar 30 2020 01:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47200 * 240.00192 * 2 1 3 5 5 C 1.50701 * 109.47015 * 65.57360 * 4 2 1 6 6 H 1.07997 * 120.00204 * 355.15805 * 5 4 2 7 7 C 1.37885 * 119.99905 * 175.15386 * 5 4 2 8 8 N 1.31515 * 119.99953 * 179.72432 * 7 5 4 9 9 Si 1.86804 * 119.99907 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46893 * 269.72034 * 9 7 5 11 11 H 1.48497 * 109.47167 * 29.71943 * 9 7 5 12 12 H 1.48494 * 109.47056 * 149.72229 * 9 7 5 13 13 N 1.46897 * 109.47455 * 120.00339 * 2 1 3 14 14 C 1.48506 * 111.00451 * 181.23443 * 13 2 1 15 15 C 1.54264 * 104.73648 * 159.33609 * 14 13 2 16 16 H 1.09004 * 113.16858 * 212.62829 * 15 14 13 17 17 C 1.54390 * 108.77566 * 86.57824 * 15 14 13 18 18 O 1.44380 * 104.92202 * 272.82557 * 17 15 14 19 19 C 1.46060 * 105.41176 * 319.16298 * 18 17 15 20 20 C 1.54389 * 104.09723 * 40.74988 * 19 18 17 21 21 C 1.50700 * 112.68157 * 213.03467 * 20 19 18 22 22 O 1.20821 * 120.00072 * 117.48250 * 21 20 19 23 23 O 1.34226 * 120.00083 * 297.47941 * 21 20 19 24 24 C 1.48508 * 111.00079 * 296.63138 * 13 2 1 25 25 H 1.09004 * 109.47384 * 299.99538 * 1 2 3 26 26 H 1.08992 * 109.47481 * 59.99877 * 1 2 3 27 27 H 1.09010 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47149 * 305.57134 * 4 2 1 29 29 H 1.09004 * 109.47501 * 185.57518 * 4 2 1 30 30 H 0.96987 * 119.99763 * 180.27838 * 8 7 5 31 31 H 1.08996 * 110.38566 * 278.15187 * 14 13 2 32 32 H 1.09004 * 110.38405 * 40.52628 * 14 13 2 33 33 H 1.08998 * 110.35198 * 31.69187 * 17 15 14 34 34 H 1.09008 * 110.34928 * 153.97182 * 17 15 14 35 35 H 1.08993 * 110.52037 * 282.26533 * 19 18 17 36 36 H 1.09002 * 110.96294 * 159.45020 * 19 18 17 37 37 H 0.96699 * 117.00511 * 180.02562 * 23 21 20 38 38 H 1.09003 * 110.38277 * 319.49632 * 24 13 2 39 39 H 1.08995 * 110.38656 * 81.85726 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6534 0.0645 -2.4758 6 1 1.0332 0.9434 -2.3808 7 6 2.0918 -0.3389 -3.7194 8 7 1.7500 0.3436 -4.7903 9 14 3.1642 -1.8596 -3.8837 10 1 4.5939 -1.4699 -3.7871 11 1 2.8372 -2.8158 -2.7957 12 1 2.9140 -2.5019 -5.1990 13 7 2.0196 -0.6925 1.1993 14 6 3.5039 -0.6866 1.2487 15 6 3.8482 -0.9381 2.7312 16 1 4.7614 -0.4359 3.0506 17 6 3.8881 -2.4613 2.9806 18 8 2.5255 -2.8228 3.2924 19 6 2.0273 -1.7528 4.1529 20 6 2.5929 -0.4647 3.5170 21 6 2.9085 0.5975 4.5384 22 8 4.0455 0.9811 4.6794 23 8 1.9266 1.1174 5.2914 24 6 1.6112 0.0262 2.4330 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.5974 -1.7160 -1.3006 29 1 3.1254 -0.8085 -1.2008 30 1 2.0551 0.0576 -5.6654 31 1 3.9077 -1.4836 0.6246 32 1 3.8905 0.2809 0.9281 33 1 4.2232 -2.9834 2.0844 34 1 4.5430 -2.6907 3.8212 35 1 2.4052 -1.8719 5.1683 36 1 0.9376 -1.7284 4.1536 37 1 2.1776 1.7962 5.9327 38 1 1.7066 1.1031 2.2942 39 1 0.5874 -0.2334 2.7024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589012084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:28 Heat of formation + Delta-G solvation = -124.515701 kcal Electronic energy + Delta-G solvation = -21895.124650 eV Core-core repulsion = 18609.876992 eV Total energy + Delta-G solvation = -3285.247659 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.39129 -39.51890 -37.14078 -36.40763 -34.02005 -32.24565 -31.22122 -29.81860 -27.61529 -25.93125 -24.26993 -24.24851 -22.35270 -21.42719 -19.70299 -19.19205 -18.21801 -17.40174 -16.87393 -16.06678 -16.03548 -15.21581 -14.97801 -14.70197 -14.26578 -13.91950 -13.73053 -13.33052 -13.21038 -12.83206 -12.43674 -12.10815 -11.88002 -11.81318 -11.59418 -11.44315 -11.27100 -11.04117 -10.99726 -10.89564 -10.73946 -10.55600 -10.08637 -9.82911 -9.74365 -9.54653 -9.16489 -8.52943 -8.05800 -6.04453 -4.02245 1.87086 2.64166 3.31118 3.39543 3.45283 3.85277 3.91383 4.34467 4.38860 4.46089 4.63452 4.91975 4.96776 5.03628 5.29850 5.38639 5.44516 5.49544 5.55958 5.67110 5.68916 5.78356 5.81730 5.92989 5.99687 6.14087 6.17494 6.22595 6.54305 6.64515 6.70508 6.99991 7.06955 7.16879 7.38480 7.57795 7.60821 7.83743 8.52717 8.99568 9.58135 11.08716 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026621 B = 0.005396 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.552063 B = 5187.699775 C = 5557.672051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.083 3.917 3 H 0.036 0.964 4 C -0.001 4.001 5 C -0.518 4.518 6 H 0.073 0.927 7 C 0.068 3.932 8 N -0.904 5.904 9 Si 0.877 3.123 10 H -0.278 1.278 11 H -0.263 1.263 12 H -0.288 1.288 13 N -0.494 5.494 14 C 0.042 3.958 15 C -0.114 4.114 16 H 0.112 0.888 17 C 0.058 3.942 18 O -0.351 6.351 19 C 0.076 3.924 20 C -0.098 4.098 21 C 0.503 3.497 22 O -0.509 6.509 23 O -0.509 6.509 24 C 0.057 3.943 25 H 0.033 0.967 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.411 0.589 38 H 0.044 0.956 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.834 -1.967 20.427 20.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.024 4.024 3 H 0.054 0.946 4 C -0.039 4.039 5 C -0.556 4.556 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.543 5.543 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.187 1.187 12 H -0.214 1.214 13 N -0.219 5.219 14 C -0.086 4.086 15 C -0.133 4.133 16 H 0.130 0.870 17 C -0.019 4.019 18 O -0.269 6.269 19 C -0.001 4.001 20 C -0.100 4.100 21 C 0.345 3.655 22 O -0.396 6.396 23 O -0.321 6.321 24 C -0.071 4.071 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.269 0.731 38 H 0.063 0.937 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.697 -2.900 19.858 20.141 hybrid contribution 1.256 0.931 0.246 1.583 sum 2.953 -1.969 20.104 20.415 Atomic orbital electron populations 1.21726 0.94541 1.01875 1.00661 1.21867 0.95745 0.95364 0.89438 0.94564 1.19593 0.95579 0.96709 0.91988 1.21087 1.32379 1.12499 0.89645 0.90896 1.24984 0.95937 0.96567 0.95820 1.69905 1.46079 1.39874 0.98404 0.86816 0.80997 0.84132 0.77632 1.20435 1.18733 1.21437 1.65562 1.06874 1.48125 1.01302 1.23119 0.90121 1.01749 0.93582 1.23422 0.96799 0.97263 0.95804 0.86971 1.23422 0.84576 0.92982 1.00948 1.89463 1.26416 1.42918 1.68059 1.23509 1.00545 0.83192 0.92860 1.22535 0.99420 0.94103 0.93922 1.22773 0.82499 0.80769 0.79490 1.90711 1.22709 1.59464 1.66761 1.84548 1.41913 1.55278 1.50343 1.23016 0.97977 0.96609 0.89524 0.94835 0.90997 0.92454 0.95718 0.97010 0.92754 0.89010 0.93295 0.88115 0.92593 0.92317 0.87508 0.73051 0.93731 0.88756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 8.94 37.15 0.33 -2.07 16 2 C 0.08 1.64 1.86 -67.72 -0.13 1.51 16 3 H 0.04 0.75 7.98 -51.93 -0.41 0.34 16 4 C 0.00 -0.02 3.51 -27.88 -0.10 -0.12 16 5 C -0.52 -14.42 9.05 -34.44 -0.31 -14.73 16 6 H 0.07 2.17 7.17 -52.49 -0.38 1.79 16 7 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 9 Si 0.88 21.70 27.38 -169.99 -4.65 17.05 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.26 -6.31 6.68 56.52 0.38 -5.94 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.49 -8.32 5.05 -222.28 -1.12 -9.44 16 14 C 0.04 0.66 4.81 -2.27 -0.01 0.65 16 15 C -0.11 -1.47 3.75 -87.91 -0.33 -1.80 16 16 H 0.11 1.43 6.96 -51.93 -0.36 1.06 16 17 C 0.06 0.69 7.06 37.89 0.27 0.96 16 18 O -0.35 -4.85 11.55 -35.23 -0.41 -5.26 16 19 C 0.08 0.86 6.74 37.89 0.26 1.11 16 20 C -0.10 -1.20 1.02 -152.95 -0.16 -1.36 16 21 C 0.50 5.84 7.09 36.01 0.26 6.10 16 22 O -0.51 -7.16 16.38 -18.75 -0.31 -7.47 16 23 O -0.51 -4.34 13.42 -39.25 -0.53 -4.87 16 24 C 0.06 0.79 4.48 -2.27 -0.01 0.78 16 25 H 0.03 0.52 7.02 -51.93 -0.36 0.15 16 26 H 0.07 1.45 6.89 -51.93 -0.36 1.09 16 27 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 28 H 0.02 0.60 7.53 -51.93 -0.39 0.21 16 29 H 0.01 0.27 5.85 -51.93 -0.30 -0.03 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.09 1.47 6.89 -51.93 -0.36 1.11 16 32 H 0.05 0.80 7.96 -51.93 -0.41 0.39 16 33 H 0.10 1.19 7.50 -51.93 -0.39 0.80 16 34 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.56 7.98 -51.93 -0.41 0.15 16 36 H 0.11 1.09 7.49 -51.93 -0.39 0.70 16 37 H 0.41 1.67 9.10 45.56 0.41 2.09 16 38 H 0.04 0.64 7.76 -51.93 -0.40 0.23 16 39 H 0.09 1.21 7.02 -51.93 -0.36 0.85 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -32.87 308.10 -6.52 -39.39 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -4.89 Total: -0.06 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -0.03 Total: -7.09 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.35 Total: -36.34 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -1.24 Total: -17.59 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.65 Total: 17.05 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.87 -6.52 -39.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589012084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.125 kcal (2) G-P(sol) polarization free energy of solvation -32.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds