Wall clock time and date at job start Mon Mar 30 2020 01:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53002 * 109.47200 * 240.00192 * 2 1 3 5 5 C 1.50701 * 109.47015 * 65.57360 * 4 2 1 6 6 H 1.07997 * 120.00204 * 355.15805 * 5 4 2 7 7 C 1.37885 * 119.99905 * 175.15386 * 5 4 2 8 8 N 1.31515 * 119.99953 * 179.72432 * 7 5 4 9 9 Si 1.86804 * 119.99907 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.46893 * 269.72034 * 9 7 5 11 11 H 1.48497 * 109.47167 * 29.71943 * 9 7 5 12 12 H 1.48494 * 109.47056 * 149.72229 * 9 7 5 13 13 N 1.46897 * 109.47455 * 120.00339 * 2 1 3 14 14 C 1.48506 * 111.00451 * 181.23443 * 13 2 1 15 15 C 1.54264 * 104.73648 * 159.33609 * 14 13 2 16 16 H 1.09004 * 113.16858 * 212.62829 * 15 14 13 17 17 C 1.54390 * 108.77566 * 86.57824 * 15 14 13 18 18 O 1.44380 * 104.92202 * 272.82557 * 17 15 14 19 19 C 1.46060 * 105.41176 * 319.16298 * 18 17 15 20 20 C 1.54389 * 104.09723 * 40.74988 * 19 18 17 21 21 C 1.50700 * 112.68157 * 213.03467 * 20 19 18 22 22 O 1.20821 * 120.00072 * 117.48250 * 21 20 19 23 23 O 1.34226 * 120.00083 * 297.47941 * 21 20 19 24 24 C 1.48508 * 111.00079 * 296.63138 * 13 2 1 25 25 H 1.09004 * 109.47384 * 299.99538 * 1 2 3 26 26 H 1.08992 * 109.47481 * 59.99877 * 1 2 3 27 27 H 1.09010 * 109.47263 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47149 * 305.57134 * 4 2 1 29 29 H 1.09004 * 109.47501 * 185.57518 * 4 2 1 30 30 H 0.96987 * 119.99763 * 180.27838 * 8 7 5 31 31 H 1.08996 * 110.38566 * 278.15187 * 14 13 2 32 32 H 1.09004 * 110.38405 * 40.52628 * 14 13 2 33 33 H 1.08998 * 110.35198 * 31.69187 * 17 15 14 34 34 H 1.09008 * 110.34928 * 153.97182 * 17 15 14 35 35 H 1.08993 * 110.52037 * 282.26533 * 19 18 17 36 36 H 1.09002 * 110.96294 * 159.45020 * 19 18 17 37 37 H 0.96699 * 117.00511 * 180.02562 * 23 21 20 38 38 H 1.09003 * 110.38277 * 319.49632 * 24 13 2 39 39 H 1.08995 * 110.38656 * 81.85726 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6534 0.0645 -2.4758 6 1 1.0332 0.9434 -2.3808 7 6 2.0918 -0.3389 -3.7194 8 7 1.7500 0.3436 -4.7903 9 14 3.1642 -1.8596 -3.8837 10 1 4.5939 -1.4699 -3.7871 11 1 2.8372 -2.8158 -2.7957 12 1 2.9140 -2.5019 -5.1990 13 7 2.0196 -0.6925 1.1993 14 6 3.5039 -0.6866 1.2487 15 6 3.8482 -0.9381 2.7312 16 1 4.7614 -0.4359 3.0506 17 6 3.8881 -2.4613 2.9806 18 8 2.5255 -2.8228 3.2924 19 6 2.0273 -1.7528 4.1529 20 6 2.5929 -0.4647 3.5170 21 6 2.9085 0.5975 4.5384 22 8 4.0455 0.9811 4.6794 23 8 1.9266 1.1174 5.2914 24 6 1.6112 0.0262 2.4330 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.5974 -1.7160 -1.3006 29 1 3.1254 -0.8085 -1.2008 30 1 2.0551 0.0576 -5.6654 31 1 3.9077 -1.4836 0.6246 32 1 3.8905 0.2809 0.9281 33 1 4.2232 -2.9834 2.0844 34 1 4.5430 -2.6907 3.8212 35 1 2.4052 -1.8719 5.1683 36 1 0.9376 -1.7284 4.1536 37 1 2.1776 1.7962 5.9327 38 1 1.7066 1.1031 2.2942 39 1 0.5874 -0.2334 2.7024 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589012084.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:27 Heat of formation + Delta-G solvation = -150.082487 kcal Electronic energy + Delta-G solvation = -21896.233309 eV Core-core repulsion = 18609.876992 eV Total energy + Delta-G solvation = -3286.356318 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.37232 -40.47662 -38.42283 -37.22476 -35.60375 -34.11734 -32.25546 -31.30322 -29.26075 -27.10954 -25.61356 -25.21910 -23.92618 -22.56507 -20.93173 -20.48751 -19.15548 -19.03593 -18.25349 -17.17424 -16.97110 -16.48208 -16.16693 -16.01959 -15.56413 -15.42512 -14.97711 -14.71900 -14.51036 -14.26792 -13.94460 -13.53350 -13.18553 -12.98110 -12.75181 -12.70516 -12.59947 -12.54287 -12.34159 -12.14651 -11.87588 -11.82313 -11.77354 -11.58285 -11.36775 -11.19485 -10.74285 -10.65243 -9.42587 -8.27910 -6.30537 0.98295 1.34572 1.37757 1.50163 1.83146 2.36757 2.90317 2.95777 3.06734 3.09347 3.32616 3.72515 3.92996 4.02534 4.15937 4.19792 4.24774 4.46027 4.51907 4.53684 4.61551 4.67112 4.71786 4.73662 4.80093 4.84174 4.92107 5.01824 5.14210 5.21325 5.35886 5.45872 5.48281 5.66180 5.74871 5.89791 6.09493 6.32141 6.76428 6.87488 7.33466 8.88449 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026621 B = 0.005396 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.552063 B = 5187.699775 C = 5557.672051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.091 3.909 3 H 0.021 0.979 4 C 0.006 3.994 5 C -0.521 4.521 6 H 0.038 0.962 7 C 0.008 3.992 8 N -0.950 5.950 9 Si 0.943 3.057 10 H -0.268 1.268 11 H -0.249 1.249 12 H -0.285 1.285 13 N -0.498 5.498 14 C 0.037 3.963 15 C -0.108 4.108 16 H 0.115 0.885 17 C 0.058 3.942 18 O -0.374 6.374 19 C 0.077 3.923 20 C -0.095 4.095 21 C 0.513 3.487 22 O -0.537 6.537 23 O -0.499 6.499 24 C 0.056 3.944 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.057 0.943 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.432 0.568 38 H 0.040 0.960 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 -3.196 22.927 23.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 H 0.039 0.961 4 C -0.032 4.032 5 C -0.560 4.560 6 H 0.057 0.943 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.173 1.173 12 H -0.211 1.211 13 N -0.222 5.222 14 C -0.091 4.091 15 C -0.127 4.127 16 H 0.133 0.867 17 C -0.018 4.018 18 O -0.293 6.293 19 C 0.000 4.000 20 C -0.097 4.097 21 C 0.355 3.645 22 O -0.426 6.426 23 O -0.313 6.313 24 C -0.072 4.072 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.054 0.946 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.295 0.705 38 H 0.058 0.942 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.095 -4.114 22.403 22.874 hybrid contribution 1.055 1.423 -0.476 1.834 sum 3.150 -2.691 21.926 22.315 Atomic orbital electron populations 1.21624 0.93597 1.01950 1.00894 1.21595 0.96484 0.94137 0.89499 0.96139 1.19460 0.95686 0.95943 0.92099 1.21381 1.31296 1.11705 0.91572 0.94348 1.25896 0.97571 0.99966 0.95446 1.70050 1.47934 1.42049 0.99093 0.85753 0.79335 0.80209 0.77966 1.19287 1.17286 1.21084 1.65488 1.07651 1.47936 1.01149 1.23160 0.89397 1.00821 0.95732 1.23341 0.97324 0.98330 0.93748 0.86662 1.23487 0.84479 0.91940 1.01915 1.89436 1.27191 1.43910 1.68753 1.23672 1.01306 0.81683 0.93320 1.22462 0.98425 0.95052 0.93792 1.22497 0.82331 0.80286 0.79353 1.90714 1.23885 1.60317 1.67729 1.84491 1.40671 1.55721 1.50375 1.23084 0.99303 0.96144 0.88637 0.91671 0.93688 0.92354 0.96291 0.96676 0.92588 0.89656 0.94632 0.88285 0.90292 0.90195 0.86321 0.70536 0.94160 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.48 8.94 71.98 0.64 -3.84 16 2 C 0.09 3.58 1.86 44.91 0.08 3.66 16 3 H 0.02 0.87 7.98 -2.39 -0.02 0.85 16 4 C 0.01 0.28 3.51 29.85 0.10 0.38 16 5 C -0.52 -29.83 9.05 25.60 0.23 -29.59 16 6 H 0.04 2.40 7.17 -2.91 -0.02 2.38 16 7 C 0.01 0.47 5.47 84.66 0.46 0.93 16 8 N -0.95 -59.74 13.96 21.45 0.30 -59.44 16 9 Si 0.94 44.86 27.38 68.60 1.88 46.73 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 11 H -0.25 -11.21 6.68 99.48 0.66 -10.54 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 13 N -0.50 -16.15 5.05 -857.15 -4.33 -20.47 16 14 C 0.04 1.12 4.81 86.42 0.42 1.54 16 15 C -0.11 -2.60 3.75 -9.04 -0.03 -2.64 16 16 H 0.12 2.73 6.96 -2.38 -0.02 2.71 16 17 C 0.06 1.27 7.06 72.45 0.51 1.78 16 18 O -0.37 -9.35 11.55 -148.98 -1.72 -11.07 16 19 C 0.08 1.47 6.74 72.45 0.49 1.96 16 20 C -0.10 -2.09 1.02 -51.17 -0.05 -2.14 16 21 C 0.51 10.48 7.09 71.24 0.51 10.99 16 22 O -0.54 -13.91 16.38 21.98 0.36 -13.55 16 23 O -0.50 -6.77 13.42 -51.38 -0.69 -7.46 16 24 C 0.06 1.44 4.48 86.42 0.39 1.83 16 25 H 0.06 1.92 7.02 -2.38 -0.02 1.90 16 26 H 0.04 1.86 6.89 -2.39 -0.02 1.84 16 27 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 28 H 0.02 0.91 7.53 -2.39 -0.02 0.90 16 29 H 0.01 0.70 5.85 -2.38 -0.01 0.68 16 30 H 0.27 15.61 8.31 -92.72 -0.77 14.83 16 31 H 0.09 2.67 6.89 -2.39 -0.02 2.65 16 32 H 0.04 1.16 7.96 -2.38 -0.02 1.14 16 33 H 0.10 2.16 7.50 -2.39 -0.02 2.14 16 34 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 35 H 0.08 1.21 7.98 -2.39 -0.02 1.19 16 36 H 0.12 1.98 7.49 -2.39 -0.02 1.96 16 37 H 0.43 2.01 9.10 -74.06 -0.67 1.33 16 38 H 0.04 1.08 7.76 -2.39 -0.02 1.06 16 39 H 0.11 2.47 7.02 -2.39 -0.02 2.46 16 Total: -1.00 -71.52 308.10 -0.10 -71.62 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.35 Total: 8.78 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 3.75 Total: -15.14 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -4.03 Total: -79.91 kcal Atomic # 8 Polarization: -30.03 SS G_CDS: -2.05 Total: -32.08 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.73 kcal Total: -71.52 -0.10 -71.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589012084.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.464 kcal (2) G-P(sol) polarization free energy of solvation -71.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds