Wall clock time and date at job start Mon Mar 30 2020 01:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47185 * 2 1 4 4 C 1.53000 * 109.47222 * 119.99734 * 2 1 3 5 5 C 1.50695 * 109.47469 * 184.99835 * 4 2 1 6 6 H 1.08003 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00209 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00106 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46891 * 90.00498 * 9 7 5 11 11 H 1.48505 * 109.47097 * 210.00419 * 9 7 5 12 12 H 1.48494 * 109.46957 * 330.00293 * 9 7 5 13 13 N 1.46900 * 109.47205 * 240.00173 * 2 1 3 14 14 C 1.49273 * 110.83380 * 313.08683 * 13 2 1 15 15 C 1.54266 * 104.49411 * 159.73667 * 14 13 2 16 16 H 1.09000 * 112.66079 * 212.12547 * 15 14 13 17 17 C 1.54386 * 109.35342 * 86.00253 * 15 14 13 18 18 O 1.44382 * 104.92065 * 272.62955 * 17 15 14 19 19 C 1.46065 * 105.40598 * 319.14986 * 18 17 15 20 20 C 1.54386 * 104.10032 * 40.74311 * 19 18 17 21 21 C 1.50698 * 112.68166 * 213.05231 * 20 19 18 22 22 O 1.20831 * 119.99805 * 117.47964 * 21 20 19 23 23 O 1.34233 * 120.00430 * 297.48394 * 21 20 19 24 24 C 1.48500 * 111.00422 * 67.92166 * 13 2 1 25 25 H 1.08998 * 109.47660 * 307.82765 * 1 2 3 26 26 H 1.09009 * 109.47276 * 67.82433 * 1 2 3 27 27 H 1.09006 * 109.47219 * 187.82152 * 1 2 3 28 28 H 1.09001 * 109.46653 * 305.00402 * 4 2 1 29 29 H 1.09001 * 109.46756 * 65.00172 * 4 2 1 30 30 H 0.97004 * 120.00232 * 179.97438 * 8 7 5 31 31 H 1.09004 * 111.21330 * 40.64488 * 14 13 2 32 32 H 1.08998 * 109.79987 * 278.12165 * 14 13 2 33 33 H 1.09002 * 110.35077 * 31.49178 * 17 15 14 34 34 H 1.08997 * 110.35404 * 153.76745 * 17 15 14 35 35 H 1.08997 * 110.51773 * 282.25800 * 19 18 17 36 36 H 1.08998 * 110.96151 * 159.44417 * 19 18 17 37 37 H 0.96696 * 116.99687 * 179.97438 * 23 21 20 38 38 H 1.09005 * 110.38315 * 81.85314 * 24 13 2 39 39 H 1.08996 * 110.38365 * 319.60072 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2302 -1.1926 2.3583 8 7 3.5763 -1.8368 3.3001 9 14 6.0919 -1.0602 2.4374 10 1 6.4696 0.1625 3.1907 11 1 6.6444 -2.2553 3.1244 12 1 6.6415 -0.9827 1.0601 13 7 2.0196 -0.6925 -1.1994 14 6 1.2981 -1.9839 -1.3986 15 6 1.5128 -2.3203 -2.8888 16 1 0.6696 -2.8569 -3.3239 17 6 2.8490 -3.0755 -3.0555 18 8 3.8439 -2.0408 -3.2108 19 6 3.2289 -1.0378 -4.0765 20 6 1.7723 -0.9483 -3.5727 21 6 0.7923 -0.6512 -4.6782 22 8 -0.0706 -1.4515 -4.9518 23 8 0.8780 0.5024 -5.3591 24 6 1.7058 0.0824 -2.4268 25 1 -0.3634 0.6302 0.8117 26 1 -0.3634 0.3879 -0.9517 27 1 -0.3634 -1.0181 0.1399 28 1 1.6053 -0.2616 2.1369 29 1 1.7516 -1.7715 1.2056 30 1 4.0606 -2.2435 4.0356 31 1 0.2349 -1.8792 -1.1825 32 1 1.7404 -2.7551 -0.7679 33 1 3.0594 -3.6738 -2.1690 34 1 2.8187 -3.7083 -3.9424 35 1 3.2511 -1.3651 -5.1159 36 1 3.7265 -0.0738 -3.9710 37 1 0.2274 0.6481 -6.0595 38 1 2.4458 0.8681 -2.5794 39 1 0.7061 0.5114 -2.3597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589012088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:30 Heat of formation + Delta-G solvation = -118.542861 kcal Electronic energy + Delta-G solvation = -22185.383624 eV Core-core repulsion = 18900.394967 eV Total energy + Delta-G solvation = -3284.988657 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.26432 -39.41117 -37.10786 -36.32359 -33.70181 -32.16434 -30.88152 -29.29190 -27.32015 -25.89563 -24.40701 -23.88397 -22.61270 -21.41704 -19.76175 -18.74565 -18.14031 -17.25080 -16.15080 -15.89208 -15.75087 -15.21784 -14.78415 -14.67202 -14.35849 -13.93939 -13.73357 -13.35994 -12.76542 -12.44174 -12.20624 -11.86115 -11.78487 -11.66062 -11.44111 -11.33092 -11.22231 -11.00895 -10.89339 -10.61050 -10.50058 -10.43897 -10.34206 -9.96317 -9.51219 -9.19025 -8.96886 -8.22572 -7.69577 -5.84836 -3.82277 1.96105 2.74897 3.43343 3.49513 3.56914 4.06549 4.09304 4.52902 4.59503 4.63367 4.82302 5.10202 5.13388 5.19128 5.52301 5.55437 5.56189 5.64839 5.69479 5.74462 5.81135 5.83227 5.90121 5.96847 6.05415 6.09508 6.24767 6.30801 6.49851 6.62183 6.89410 6.93425 7.35815 7.48977 7.67321 7.80433 7.94430 8.15501 8.60644 9.23574 9.79701 11.27158 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.006136 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.845962 B = 4562.216695 C = 5052.426230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.073 3.927 3 H 0.072 0.928 4 C 0.035 3.965 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.906 5.906 9 Si 0.888 3.112 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.459 5.459 14 C 0.034 3.966 15 C -0.112 4.112 16 H 0.108 0.892 17 C 0.059 3.941 18 O -0.345 6.345 19 C 0.075 3.925 20 C -0.096 4.096 21 C 0.503 3.497 22 O -0.511 6.511 23 O -0.510 6.510 24 C 0.046 3.954 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.257 0.743 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.105 0.895 37 H 0.409 0.591 38 H 0.091 0.909 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 2.218 -16.232 17.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.035 4.035 3 H 0.090 0.910 4 C -0.002 4.002 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.148 4.148 8 N -0.547 5.547 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.182 5.182 14 C -0.094 4.094 15 C -0.131 4.131 16 H 0.126 0.874 17 C -0.018 4.018 18 O -0.262 6.262 19 C -0.002 4.002 20 C -0.098 4.098 21 C 0.345 3.655 22 O -0.399 6.399 23 O -0.321 6.321 24 C -0.082 4.082 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.113 0.887 33 H 0.121 0.879 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.267 0.733 38 H 0.109 0.891 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.118 1.774 -15.637 16.549 hybrid contribution -0.675 0.279 -0.544 0.911 sum -5.793 2.053 -16.181 17.309 Atomic orbital electron populations 1.22558 0.99679 1.01802 1.00473 1.22120 0.90149 0.98801 0.92467 0.90951 1.19110 0.96484 0.95216 0.89395 1.21158 0.91660 1.32899 1.06882 0.92048 1.24984 0.98002 0.95854 0.95991 1.69966 1.35215 1.37097 1.12393 0.86640 0.86461 0.77103 0.78100 1.21123 1.21639 1.19689 1.66180 1.50583 1.01614 0.99814 1.23397 0.97630 0.95207 0.93184 1.23383 1.00037 0.92918 0.96755 0.87442 1.23395 0.86130 0.90725 1.01587 1.89524 1.36329 1.31834 1.68545 1.23492 0.88576 0.94816 0.93310 1.22522 0.95086 0.99406 0.92780 1.22884 0.83395 0.78255 0.80962 1.90699 1.35363 1.47925 1.65916 1.84568 1.58453 1.39962 1.49111 1.23133 1.00387 0.95155 0.89544 0.92339 0.94129 0.92380 0.96334 0.96433 0.93391 0.92994 0.88682 0.87901 0.92938 0.92606 0.87643 0.73268 0.89095 0.93847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.12 8.12 37.16 0.30 -2.82 16 2 C 0.07 1.45 2.28 -67.71 -0.15 1.29 16 3 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 4 C 0.04 0.88 4.48 -27.89 -0.12 0.75 16 5 C -0.49 -13.62 8.84 -34.45 -0.30 -13.93 16 6 H 0.06 1.73 7.74 -52.48 -0.41 1.32 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.91 -27.31 13.29 55.43 0.74 -26.58 16 9 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.46 -8.48 4.96 -221.59 -1.10 -9.58 16 14 C 0.03 0.56 4.97 -1.84 -0.01 0.55 16 15 C -0.11 -1.61 3.71 -87.91 -0.33 -1.94 16 16 H 0.11 1.48 6.96 -51.93 -0.36 1.12 16 17 C 0.06 0.84 7.08 37.88 0.27 1.11 16 18 O -0.34 -5.75 11.56 -35.23 -0.41 -6.15 16 19 C 0.08 1.00 6.74 37.88 0.26 1.26 16 20 C -0.10 -1.31 1.02 -152.96 -0.16 -1.46 16 21 C 0.50 6.26 7.09 36.00 0.26 6.52 16 22 O -0.51 -7.50 16.38 -18.75 -0.31 -7.80 16 23 O -0.51 -4.73 13.42 -39.26 -0.53 -5.26 16 24 C 0.05 0.70 5.31 -2.28 -0.01 0.69 16 25 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.04 0.61 6.15 -51.92 -0.32 0.29 16 27 H 0.06 0.97 6.40 -51.93 -0.33 0.64 16 28 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.02 0.46 7.17 -51.93 -0.37 0.09 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.05 0.84 5.44 -51.93 -0.28 0.56 16 32 H 0.09 1.77 7.06 -51.93 -0.37 1.40 16 33 H 0.10 1.52 7.54 -51.93 -0.39 1.13 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.64 7.98 -51.93 -0.41 0.22 16 36 H 0.11 1.31 7.49 -51.93 -0.39 0.93 16 37 H 0.41 1.91 9.10 45.56 0.41 2.32 16 38 H 0.09 1.32 7.49 -51.93 -0.39 0.93 16 39 H 0.04 0.63 5.86 -51.93 -0.30 0.33 16 LS Contribution 308.80 15.07 4.65 4.65 Total: -1.00 -32.94 308.80 -6.81 -39.76 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.74 Total: 0.29 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.10 Total: -6.60 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.36 Total: -36.15 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -1.24 Total: -19.21 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.94 -6.81 -39.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589012088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.785 kcal (2) G-P(sol) polarization free energy of solvation -32.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds