Wall clock time and date at job start Mon Mar 30 2020 01:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47185 * 2 1 4 4 C 1.53000 * 109.47222 * 119.99734 * 2 1 3 5 5 C 1.50695 * 109.47469 * 184.99835 * 4 2 1 6 6 H 1.08003 * 119.99966 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00209 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00106 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00136 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46891 * 90.00498 * 9 7 5 11 11 H 1.48505 * 109.47097 * 210.00419 * 9 7 5 12 12 H 1.48494 * 109.46957 * 330.00293 * 9 7 5 13 13 N 1.46900 * 109.47205 * 240.00173 * 2 1 3 14 14 C 1.49273 * 110.83380 * 313.08683 * 13 2 1 15 15 C 1.54266 * 104.49411 * 159.73667 * 14 13 2 16 16 H 1.09000 * 112.66079 * 212.12547 * 15 14 13 17 17 C 1.54386 * 109.35342 * 86.00253 * 15 14 13 18 18 O 1.44382 * 104.92065 * 272.62955 * 17 15 14 19 19 C 1.46065 * 105.40598 * 319.14986 * 18 17 15 20 20 C 1.54386 * 104.10032 * 40.74311 * 19 18 17 21 21 C 1.50698 * 112.68166 * 213.05231 * 20 19 18 22 22 O 1.20831 * 119.99805 * 117.47964 * 21 20 19 23 23 O 1.34233 * 120.00430 * 297.48394 * 21 20 19 24 24 C 1.48500 * 111.00422 * 67.92166 * 13 2 1 25 25 H 1.08998 * 109.47660 * 307.82765 * 1 2 3 26 26 H 1.09009 * 109.47276 * 67.82433 * 1 2 3 27 27 H 1.09006 * 109.47219 * 187.82152 * 1 2 3 28 28 H 1.09001 * 109.46653 * 305.00402 * 4 2 1 29 29 H 1.09001 * 109.46756 * 65.00172 * 4 2 1 30 30 H 0.97004 * 120.00232 * 179.97438 * 8 7 5 31 31 H 1.09004 * 111.21330 * 40.64488 * 14 13 2 32 32 H 1.08998 * 109.79987 * 278.12165 * 14 13 2 33 33 H 1.09002 * 110.35077 * 31.49178 * 17 15 14 34 34 H 1.08997 * 110.35404 * 153.76745 * 17 15 14 35 35 H 1.08997 * 110.51773 * 282.25800 * 19 18 17 36 36 H 1.08998 * 110.96151 * 159.44417 * 19 18 17 37 37 H 0.96696 * 116.99687 * 179.97438 * 23 21 20 38 38 H 1.09005 * 110.38315 * 81.85314 * 24 13 2 39 39 H 1.08996 * 110.38365 * 319.60072 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5418 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2302 -1.1926 2.3583 8 7 3.5763 -1.8368 3.3001 9 14 6.0919 -1.0602 2.4374 10 1 6.4696 0.1625 3.1907 11 1 6.6444 -2.2553 3.1244 12 1 6.6415 -0.9827 1.0601 13 7 2.0196 -0.6925 -1.1994 14 6 1.2981 -1.9839 -1.3986 15 6 1.5128 -2.3203 -2.8888 16 1 0.6696 -2.8569 -3.3239 17 6 2.8490 -3.0755 -3.0555 18 8 3.8439 -2.0408 -3.2108 19 6 3.2289 -1.0378 -4.0765 20 6 1.7723 -0.9483 -3.5727 21 6 0.7923 -0.6512 -4.6782 22 8 -0.0706 -1.4515 -4.9518 23 8 0.8780 0.5024 -5.3591 24 6 1.7058 0.0824 -2.4268 25 1 -0.3634 0.6302 0.8117 26 1 -0.3634 0.3879 -0.9517 27 1 -0.3634 -1.0181 0.1399 28 1 1.6053 -0.2616 2.1369 29 1 1.7516 -1.7715 1.2056 30 1 4.0606 -2.2435 4.0356 31 1 0.2349 -1.8792 -1.1825 32 1 1.7404 -2.7551 -0.7679 33 1 3.0594 -3.6738 -2.1690 34 1 2.8187 -3.7083 -3.9424 35 1 3.2511 -1.3651 -5.1159 36 1 3.7265 -0.0738 -3.9710 37 1 0.2274 0.6481 -6.0595 38 1 2.4458 0.8681 -2.5794 39 1 0.7061 0.5114 -2.3597 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589012088.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:29 Heat of formation + Delta-G solvation = -143.481037 kcal Electronic energy + Delta-G solvation = -22186.465024 eV Core-core repulsion = 18900.394967 eV Total energy + Delta-G solvation = -3286.070057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.35150 -40.46199 -38.48012 -37.19315 -35.38340 -33.99938 -32.03698 -30.79998 -29.11728 -27.07947 -25.81054 -25.11658 -24.25547 -22.68843 -20.93778 -20.13626 -19.07786 -18.40269 -18.26021 -16.93319 -16.90466 -16.54094 -16.45462 -15.91491 -15.73799 -15.18189 -14.92238 -14.85156 -14.25265 -13.76904 -13.69455 -13.58142 -13.14804 -12.88769 -12.79848 -12.62273 -12.52746 -12.50756 -12.36275 -12.33692 -12.07415 -11.81090 -11.64776 -11.48861 -11.09367 -11.06447 -10.62790 -10.45232 -9.09806 -8.07263 -6.11059 1.00965 1.43022 1.44781 1.56874 1.86235 2.50397 2.96355 2.99846 3.20100 3.32399 3.40276 3.76066 3.95684 4.06566 4.17419 4.23025 4.33431 4.41764 4.52216 4.55056 4.56836 4.62587 4.73831 4.78016 4.85020 4.87533 4.92139 5.07050 5.19585 5.25262 5.47214 5.48948 5.69770 5.80802 5.90310 6.09654 6.27137 6.48952 6.90926 7.02436 7.54723 9.04788 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.006136 C = 0.005541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.845962 B = 4562.216695 C = 5052.426230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 H 0.069 0.931 4 C 0.042 3.958 5 C -0.494 4.494 6 H 0.057 0.943 7 C -0.004 4.004 8 N -0.941 5.941 9 Si 0.953 3.047 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.485 5.485 14 C 0.035 3.965 15 C -0.105 4.105 16 H 0.118 0.882 17 C 0.057 3.943 18 O -0.379 6.379 19 C 0.074 3.926 20 C -0.092 4.092 21 C 0.516 3.484 22 O -0.534 6.534 23 O -0.499 6.499 24 C 0.049 3.951 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.053 0.947 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.258 0.742 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.432 0.568 38 H 0.097 0.903 39 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.049 3.226 -18.498 19.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.088 0.912 4 C 0.005 3.995 5 C -0.533 4.533 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.194 1.194 13 N -0.208 5.208 14 C -0.093 4.093 15 C -0.124 4.124 16 H 0.135 0.865 17 C -0.019 4.019 18 O -0.297 6.297 19 C -0.003 4.003 20 C -0.094 4.094 21 C 0.359 3.641 22 O -0.424 6.424 23 O -0.313 6.313 24 C -0.079 4.079 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.294 0.706 38 H 0.115 0.885 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.149 2.814 -17.936 18.871 hybrid contribution -0.682 0.002 0.127 0.694 sum -5.831 2.816 -17.809 18.950 Atomic orbital electron populations 1.22417 0.97134 1.01880 1.02016 1.21782 0.92137 0.97679 0.91077 0.91247 1.18943 0.95178 0.94127 0.91281 1.21467 0.93226 1.32167 1.06420 0.92462 1.25798 1.02609 0.95732 0.95826 1.70089 1.36958 1.38199 1.13086 0.85619 0.81007 0.77321 0.78110 1.20091 1.21391 1.19394 1.66008 1.51589 1.02601 1.00608 1.23318 0.97431 0.93886 0.94641 1.23288 1.00361 0.93786 0.94934 0.86454 1.23448 0.85691 0.90631 1.02172 1.89480 1.37620 1.33013 1.69597 1.23673 0.88031 0.94612 0.93978 1.22393 0.95933 0.98112 0.92913 1.22408 0.82424 0.78678 0.80627 1.90708 1.36118 1.48914 1.66660 1.84505 1.59180 1.38038 1.49530 1.23140 1.01102 0.95286 0.88378 0.91913 0.91637 0.92799 0.98878 0.98886 0.93374 0.92394 0.91658 0.89458 0.90286 0.90207 0.86920 0.70550 0.88468 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.71 8.12 71.98 0.58 -5.13 16 2 C 0.08 3.25 2.28 44.91 0.10 3.36 16 3 H 0.07 2.78 8.11 -2.38 -0.02 2.76 16 4 C 0.04 2.17 4.48 29.85 0.13 2.31 16 5 C -0.49 -28.22 8.84 25.60 0.23 -27.99 16 6 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.15 13.29 21.44 0.28 -57.87 16 9 Si 0.95 46.28 29.54 68.60 2.03 48.31 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 12 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 13 N -0.48 -17.74 4.96 -854.98 -4.24 -21.97 16 14 C 0.03 1.18 4.97 86.27 0.43 1.61 16 15 C -0.10 -2.88 3.71 -9.04 -0.03 -2.92 16 16 H 0.12 3.03 6.96 -2.39 -0.02 3.01 16 17 C 0.06 1.60 7.08 72.45 0.51 2.12 16 18 O -0.38 -12.23 11.56 -148.98 -1.72 -13.95 16 19 C 0.07 1.78 6.74 72.45 0.49 2.27 16 20 C -0.09 -2.27 1.02 -51.18 -0.05 -2.32 16 21 C 0.52 11.12 7.09 71.24 0.51 11.62 16 22 O -0.53 -14.04 16.38 21.95 0.36 -13.68 16 23 O -0.50 -7.24 13.42 -51.44 -0.69 -7.93 16 24 C 0.05 1.37 5.31 86.42 0.46 1.83 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 26 H 0.06 1.80 6.15 -2.38 -0.01 1.78 16 27 H 0.05 1.79 6.40 -2.38 -0.02 1.77 16 28 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 29 H -0.01 -0.41 7.17 -2.39 -0.02 -0.42 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H 0.06 1.86 5.44 -2.38 -0.01 1.84 16 32 H 0.06 2.56 7.06 -2.39 -0.02 2.54 16 33 H 0.09 2.66 7.54 -2.39 -0.02 2.65 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.08 1.55 7.98 -2.39 -0.02 1.53 16 36 H 0.11 2.52 7.49 -2.39 -0.02 2.51 16 37 H 0.43 2.19 9.10 -74.06 -0.67 1.51 16 38 H 0.10 2.60 7.49 -2.38 -0.02 2.58 16 39 H 0.05 1.40 5.86 -2.39 -0.01 1.39 16 Total: -1.00 -71.39 308.80 0.23 -71.15 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.40 Total: 8.95 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: 3.82 Total: -13.01 kcal Atomic # 7 Polarization: -75.89 SS G_CDS: -3.95 Total: -79.84 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -2.05 Total: -35.56 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -71.39 0.23 -71.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589012088.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.330 kcal (2) G-P(sol) polarization free energy of solvation -71.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds