Wall clock time and date at job start Mon Mar 30 2020 01:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49532 * 2 1 4 4 C 1.53035 * 109.49610 * 239.90161 * 2 1 3 5 5 C 1.53038 * 109.54175 * 301.41299 * 4 2 1 6 6 H 1.09000 * 109.49410 * 58.61748 * 5 4 2 7 7 C 1.50699 * 109.49914 * 178.68279 * 5 4 2 8 8 O 1.20824 * 119.99982 * 0.02562 * 7 5 4 9 9 O 1.34230 * 119.99559 * 179.97438 * 7 5 4 10 10 C 1.53195 * 109.31078 * 298.63655 * 5 4 2 11 11 N 1.47207 * 108.85456 * 54.64814 * 10 5 4 12 12 C 1.34778 * 120.81118 * 126.33789 * 11 10 5 13 13 O 1.21286 * 119.99664 * 180.14339 * 12 11 10 14 14 C 1.50696 * 120.00030 * 0.14238 * 12 11 10 15 15 C 1.53007 * 109.47054 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47054 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99680 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99538 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00061 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47301 * 89.99432 * 20 18 16 22 22 H 1.48505 * 109.47047 * 209.99573 * 20 18 16 23 23 H 1.48498 * 109.47176 * 329.99178 * 20 18 16 24 24 C 1.46926 * 118.55531 * 306.47735 * 11 10 5 25 25 H 1.09006 * 109.47174 * 299.93764 * 1 2 3 26 26 H 1.08995 * 109.47348 * 59.93646 * 1 2 3 27 27 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46332 * 61.43764 * 4 2 1 29 29 H 1.09005 * 109.46002 * 181.40338 * 4 2 1 30 30 H 0.96700 * 116.99727 * 180.02562 * 9 7 5 31 31 H 1.08996 * 109.58670 * 174.42176 * 10 5 4 32 32 H 1.09002 * 109.58549 * 294.69988 * 10 5 4 33 33 H 1.08992 * 109.47349 * 300.00085 * 14 12 11 34 34 H 1.09000 * 109.46730 * 60.00487 * 14 12 11 35 35 H 1.09005 * 109.46949 * 300.00368 * 15 14 12 36 36 H 1.09001 * 109.46696 * 59.99699 * 15 14 12 37 37 H 0.97001 * 119.99787 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.58861 * 293.68122 * 24 11 10 39 39 H 1.08996 * 109.58519 * 173.40013 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7234 -1.2481 5 6 1.5030 -2.1561 -1.2654 6 1 0.4132 -2.1358 -1.2540 7 6 1.9800 -2.8575 -2.5110 8 8 2.6790 -2.2721 -3.3038 9 8 1.6292 -4.1329 -2.7391 10 6 2.0140 -2.9040 -0.0299 11 7 1.6514 -2.1379 1.1737 12 6 0.9740 -2.7188 2.1837 13 8 0.6806 -2.0730 3.1675 14 6 0.5812 -4.1707 2.0907 15 6 -0.1724 -4.5775 3.3586 16 6 -0.5657 -6.0292 3.2653 17 1 -0.3040 -6.6043 2.3895 18 6 -1.2588 -6.6234 4.2986 19 7 -1.6025 -7.8902 4.2169 20 14 -1.7108 -5.6288 5.8137 21 1 -3.0408 -4.9990 5.6139 22 1 -1.7599 -6.5244 6.9973 23 1 -0.6910 -4.5722 6.0346 24 6 2.0414 -0.7234 1.2498 25 1 -0.3634 0.5129 0.8906 26 1 -0.3634 0.5148 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6987 -0.1964 -2.1389 29 1 3.1305 -0.7449 -1.2350 30 1 1.9597 -4.5405 -3.5513 31 1 1.5555 -3.8918 0.0149 32 1 3.0977 -3.0065 -0.0871 33 1 -0.0619 -4.3183 1.2232 34 1 1.4768 -4.7835 1.9875 35 1 0.4705 -4.4298 4.2265 36 1 -1.0679 -3.9646 3.4614 37 1 -2.0904 -8.3081 4.9437 38 1 3.1275 -0.6458 1.2982 39 1 1.6028 -0.2708 2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589268334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:41 Heat of formation + Delta-G solvation = -143.806864 kcal Electronic energy + Delta-G solvation = -21301.031170 eV Core-core repulsion = 18014.946984 eV Total energy + Delta-G solvation = -3286.084186 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.01218 -39.77043 -37.63772 -36.33371 -33.79576 -33.37707 -32.31760 -31.20261 -27.48549 -26.48022 -25.01891 -24.81806 -21.88611 -21.01317 -19.50226 -18.64134 -18.24098 -17.47266 -16.80732 -16.39003 -16.01122 -15.37237 -15.15860 -14.51892 -14.33394 -14.12313 -13.85409 -13.62401 -13.37926 -13.06655 -12.60718 -12.48370 -12.20592 -11.95321 -11.75979 -11.51791 -11.36669 -11.17120 -11.00973 -10.96689 -10.78010 -10.68673 -10.14556 -10.04002 -9.79149 -9.25741 -9.15838 -8.61034 -8.50520 -6.03252 -4.01951 1.90241 2.69374 3.02721 3.16031 3.37558 3.44337 3.55007 4.24677 4.45163 4.50675 4.53501 4.69271 4.90088 5.00049 5.11361 5.14423 5.29816 5.32340 5.41732 5.50674 5.59986 5.63931 5.68914 5.86739 5.87018 5.96097 6.01943 6.05854 6.15795 6.26122 6.53955 6.68177 7.34965 7.42125 7.53422 7.63769 7.78565 8.47092 8.57346 8.99830 9.59884 11.09577 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.004960 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.585286 B = 5643.661497 C = 6565.858866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 H 0.087 0.913 4 C -0.098 4.098 5 C -0.100 4.100 6 H 0.119 0.881 7 C 0.488 3.512 8 O -0.516 6.516 9 O -0.510 6.510 10 C 0.120 3.880 11 N -0.620 5.620 12 C 0.516 3.484 13 O -0.535 6.535 14 C -0.123 4.123 15 C 0.002 3.998 16 C -0.524 4.524 17 H 0.073 0.927 18 C 0.070 3.930 19 N -0.903 5.903 20 Si 0.877 3.123 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.110 3.890 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.411 0.589 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.023 0.977 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.051 13.720 -13.839 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 H 0.105 0.895 4 C -0.135 4.135 5 C -0.120 4.120 6 H 0.137 0.863 7 C 0.330 3.670 8 O -0.404 6.404 9 O -0.321 6.321 10 C -0.004 4.004 11 N -0.356 5.356 12 C 0.306 3.694 13 O -0.410 6.410 14 C -0.163 4.163 15 C -0.036 4.036 16 C -0.562 4.562 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.704 3.296 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.185 1.185 24 C -0.013 4.013 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.270 0.730 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.838 14.254 -13.023 20.837 hybrid contribution -0.057 0.086 0.037 0.109 sum 7.781 14.339 -12.985 20.852 Atomic orbital electron populations 1.21872 0.94503 1.02483 1.01823 1.21518 0.96913 0.99587 0.94357 0.89502 1.21468 1.01354 0.92151 0.98547 1.21542 1.04125 0.95960 0.90412 0.86292 1.23315 0.76566 0.79726 0.87418 1.90716 1.35647 1.66507 1.47522 1.84590 1.71902 1.27831 1.47799 1.21608 1.00598 0.95831 0.82318 1.48244 1.58120 1.10954 1.18257 1.21558 0.75584 0.90879 0.81330 1.90650 1.53773 1.65617 1.30970 1.21720 1.02031 0.89180 1.03342 1.19380 0.95423 0.96809 0.92015 1.21103 1.36164 0.93744 1.05225 0.90896 1.24963 0.95165 0.94734 0.98309 1.69910 1.39872 1.11296 1.33141 0.86809 0.79659 0.80460 0.82703 1.20253 1.21454 1.18545 1.21623 0.99313 0.81494 0.98839 0.92225 0.92668 0.92167 0.90662 0.90723 0.72988 0.87513 0.90911 0.89515 0.89537 0.95837 0.96289 0.92725 0.91754 0.88670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.70 37.16 0.32 -1.15 16 2 C -0.10 -0.94 3.21 -90.50 -0.29 -1.23 16 3 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.10 -0.86 4.01 -26.69 -0.11 -0.96 16 5 C -0.10 -0.95 2.44 -91.65 -0.22 -1.17 16 6 H 0.12 1.11 6.33 -51.93 -0.33 0.78 16 7 C 0.49 4.81 7.63 36.01 0.27 5.08 16 8 O -0.52 -6.33 16.74 -18.75 -0.31 -6.65 16 9 O -0.51 -4.21 13.35 -39.26 -0.52 -4.73 16 10 C 0.12 1.27 5.57 -3.56 -0.02 1.25 16 11 N -0.62 -8.15 2.43 -172.54 -0.42 -8.57 16 12 C 0.52 9.12 7.70 -10.99 -0.08 9.04 16 13 O -0.53 -11.45 15.39 5.55 0.09 -11.36 16 14 C -0.12 -2.32 3.99 -27.88 -0.11 -2.44 16 15 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 16 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 17 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 19 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 20 Si 0.88 22.42 27.47 -169.99 -4.67 17.75 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 24 C 0.11 1.24 5.82 -3.71 -0.02 1.21 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.68 5.97 -51.93 -0.31 0.37 16 28 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 29 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 30 H 0.41 1.68 9.10 45.56 0.41 2.09 16 31 H 0.11 1.16 5.97 -51.93 -0.31 0.85 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.51 7.70 -51.93 -0.40 1.11 16 34 H 0.09 1.52 7.96 -51.93 -0.41 1.10 16 35 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 36 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.25 7.00 -51.93 -0.36 0.88 16 LS Contribution 315.53 15.07 4.76 4.76 Total: -1.00 -35.09 315.53 -6.11 -41.20 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.01 Total: -1.77 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -0.78 Total: -3.60 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 0.35 Total: -35.59 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.75 Total: -22.74 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -35.09 -6.11 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589268334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.607 kcal (2) G-P(sol) polarization free energy of solvation -35.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds