Wall clock time and date at job start Mon Mar 30 2020 01:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49532 * 2 1 4 4 C 1.53035 * 109.49610 * 239.90161 * 2 1 3 5 5 C 1.53038 * 109.54175 * 301.41299 * 4 2 1 6 6 H 1.09000 * 109.49410 * 58.61748 * 5 4 2 7 7 C 1.50699 * 109.49914 * 178.68279 * 5 4 2 8 8 O 1.20824 * 119.99982 * 0.02562 * 7 5 4 9 9 O 1.34230 * 119.99559 * 179.97438 * 7 5 4 10 10 C 1.53195 * 109.31078 * 298.63655 * 5 4 2 11 11 N 1.47207 * 108.85456 * 54.64814 * 10 5 4 12 12 C 1.34778 * 120.81118 * 126.33789 * 11 10 5 13 13 O 1.21286 * 119.99664 * 180.14339 * 12 11 10 14 14 C 1.50696 * 120.00030 * 0.14238 * 12 11 10 15 15 C 1.53007 * 109.47054 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47054 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99940 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99680 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99538 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00061 * 0.02562 * 18 16 15 21 21 H 1.48501 * 109.47301 * 89.99432 * 20 18 16 22 22 H 1.48505 * 109.47047 * 209.99573 * 20 18 16 23 23 H 1.48498 * 109.47176 * 329.99178 * 20 18 16 24 24 C 1.46926 * 118.55531 * 306.47735 * 11 10 5 25 25 H 1.09006 * 109.47174 * 299.93764 * 1 2 3 26 26 H 1.08995 * 109.47348 * 59.93646 * 1 2 3 27 27 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46332 * 61.43764 * 4 2 1 29 29 H 1.09005 * 109.46002 * 181.40338 * 4 2 1 30 30 H 0.96700 * 116.99727 * 180.02562 * 9 7 5 31 31 H 1.08996 * 109.58670 * 174.42176 * 10 5 4 32 32 H 1.09002 * 109.58549 * 294.69988 * 10 5 4 33 33 H 1.08992 * 109.47349 * 300.00085 * 14 12 11 34 34 H 1.09000 * 109.46730 * 60.00487 * 14 12 11 35 35 H 1.09005 * 109.46949 * 300.00368 * 15 14 12 36 36 H 1.09001 * 109.46696 * 59.99699 * 15 14 12 37 37 H 0.97001 * 119.99787 * 180.02562 * 19 18 16 38 38 H 1.09002 * 109.58861 * 293.68122 * 24 11 10 39 39 H 1.08996 * 109.58519 * 173.40013 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7234 -1.2481 5 6 1.5030 -2.1561 -1.2654 6 1 0.4132 -2.1358 -1.2540 7 6 1.9800 -2.8575 -2.5110 8 8 2.6790 -2.2721 -3.3038 9 8 1.6292 -4.1329 -2.7391 10 6 2.0140 -2.9040 -0.0299 11 7 1.6514 -2.1379 1.1737 12 6 0.9740 -2.7188 2.1837 13 8 0.6806 -2.0730 3.1675 14 6 0.5812 -4.1707 2.0907 15 6 -0.1724 -4.5775 3.3586 16 6 -0.5657 -6.0292 3.2653 17 1 -0.3040 -6.6043 2.3895 18 6 -1.2588 -6.6234 4.2986 19 7 -1.6025 -7.8902 4.2169 20 14 -1.7108 -5.6288 5.8137 21 1 -3.0408 -4.9990 5.6139 22 1 -1.7599 -6.5244 6.9973 23 1 -0.6910 -4.5722 6.0346 24 6 2.0414 -0.7234 1.2498 25 1 -0.3634 0.5129 0.8906 26 1 -0.3634 0.5148 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6987 -0.1964 -2.1389 29 1 3.1305 -0.7449 -1.2350 30 1 1.9597 -4.5405 -3.5513 31 1 1.5555 -3.8918 0.0149 32 1 3.0977 -3.0065 -0.0871 33 1 -0.0619 -4.3183 1.2232 34 1 1.4768 -4.7835 1.9875 35 1 0.4705 -4.4298 4.2265 36 1 -1.0679 -3.9646 3.4614 37 1 -2.0904 -8.3081 4.9437 38 1 3.1275 -0.6458 1.2982 39 1 1.6028 -0.2708 2.1391 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589268334.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:40 Heat of formation + Delta-G solvation = -167.788789 kcal Electronic energy + Delta-G solvation = -21302.071105 eV Core-core repulsion = 18014.946984 eV Total energy + Delta-G solvation = -3287.124121 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.89144 -40.83824 -38.73368 -37.09447 -35.58368 -34.66628 -33.36861 -32.96612 -28.79110 -27.63612 -26.23816 -25.72089 -23.28213 -22.18976 -20.68649 -19.61222 -19.18888 -18.99118 -18.10214 -17.38470 -17.17097 -16.60198 -16.28511 -16.20918 -15.43552 -15.14271 -14.83197 -14.75456 -14.66335 -14.44386 -14.05855 -13.86520 -13.40371 -13.12024 -12.90430 -12.75434 -12.51793 -12.29069 -12.04173 -11.97007 -11.95448 -11.78745 -11.75002 -11.57905 -11.50176 -11.36289 -10.76268 -10.66587 -9.68778 -8.29669 -6.32152 1.12536 1.34203 1.36471 1.51173 1.65143 1.87992 2.22104 2.36447 3.06327 3.49189 3.59166 3.71084 3.90547 3.94757 4.12383 4.28187 4.32820 4.43028 4.47054 4.49578 4.64620 4.73116 4.76007 4.82465 4.92827 5.00386 5.09486 5.12326 5.19888 5.34080 5.38193 5.45426 5.59141 5.62379 5.62822 6.24794 6.33155 6.74244 7.00350 7.20901 7.33223 8.85977 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022565 B = 0.004960 C = 0.004263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.585286 B = 5643.661497 C = 6565.858866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 H 0.111 0.889 4 C -0.092 4.092 5 C -0.097 4.097 6 H 0.121 0.879 7 C 0.497 3.503 8 O -0.540 6.540 9 O -0.511 6.511 10 C 0.116 3.884 11 N -0.607 5.607 12 C 0.519 3.481 13 O -0.580 6.580 14 C -0.117 4.117 15 C 0.006 3.994 16 C -0.527 4.527 17 H 0.052 0.948 18 C 0.015 3.985 19 N -0.943 5.943 20 Si 0.936 3.064 21 H -0.269 1.269 22 H -0.279 1.279 23 H -0.262 1.262 24 C 0.105 3.895 25 H 0.047 0.953 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.429 0.571 31 H 0.104 0.896 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.009 0.991 36 H 0.008 0.992 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.881 15.119 -14.892 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 H 0.129 0.871 4 C -0.130 4.130 5 C -0.117 4.117 6 H 0.138 0.862 7 C 0.340 3.660 8 O -0.430 6.430 9 O -0.325 6.325 10 C -0.007 4.007 11 N -0.340 5.340 12 C 0.309 3.691 13 O -0.459 6.459 14 C -0.157 4.157 15 C -0.032 4.032 16 C -0.565 4.565 17 H 0.070 0.930 18 C -0.182 4.182 19 N -0.584 5.584 20 Si 0.761 3.239 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.186 1.186 24 C -0.017 4.017 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.291 0.709 31 H 0.122 0.878 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.691 15.647 -14.135 22.807 hybrid contribution -0.279 -0.405 0.246 0.550 sum 8.412 15.242 -13.890 22.271 Atomic orbital electron populations 1.21873 0.95263 1.01478 1.02089 1.21479 0.96126 1.00550 0.93159 0.87144 1.21437 1.01573 0.91517 0.98439 1.21499 1.04235 0.96313 0.89673 0.86172 1.23224 0.75836 0.79909 0.87039 1.90716 1.36821 1.67129 1.48381 1.84556 1.71706 1.27146 1.49058 1.21795 1.01790 0.95517 0.81576 1.48130 1.56184 1.11965 1.17746 1.21157 0.76010 0.90145 0.81780 1.90635 1.56035 1.66289 1.32967 1.21536 1.02329 0.90781 1.01007 1.19225 0.95341 0.94287 0.94378 1.21418 1.35368 0.95404 1.04273 0.93024 1.25769 0.95442 0.95656 1.01383 1.70020 1.41154 1.12849 1.34387 0.85864 0.79505 0.79060 0.79497 1.19402 1.20453 1.18601 1.21831 1.00458 0.80078 0.99295 0.93432 0.90953 0.93801 0.90049 0.90238 0.70869 0.87757 0.89037 0.87999 0.88097 0.97259 0.97338 0.92426 0.89704 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.70 71.98 0.63 -2.06 16 2 C -0.09 -1.44 3.21 -10.72 -0.03 -1.47 16 3 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 4 C -0.09 -1.34 4.01 30.62 0.12 -1.22 16 5 C -0.10 -1.59 2.44 -11.46 -0.03 -1.62 16 6 H 0.12 1.99 6.33 -2.39 -0.02 1.97 16 7 C 0.50 8.60 7.63 71.24 0.54 9.14 16 8 O -0.54 -12.01 16.74 21.97 0.37 -11.65 16 9 O -0.51 -7.24 13.35 -51.42 -0.69 -7.92 16 10 C 0.12 2.17 5.57 86.31 0.48 2.65 16 11 N -0.61 -14.93 2.43 -818.19 -1.99 -16.92 16 12 C 0.52 17.97 7.70 87.66 0.68 18.65 16 13 O -0.58 -24.90 15.39 -3.05 -0.05 -24.94 16 14 C -0.12 -4.34 3.99 29.85 0.12 -4.22 16 15 C 0.01 0.28 3.33 29.85 0.10 0.38 16 16 C -0.53 -30.03 9.66 25.60 0.25 -29.78 16 17 H 0.05 3.09 7.99 -2.91 -0.02 3.07 16 18 C 0.02 0.90 5.47 84.66 0.46 1.36 16 19 N -0.94 -58.70 13.96 21.45 0.30 -58.40 16 20 Si 0.94 46.49 27.47 68.60 1.88 48.38 16 21 H -0.27 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 24 C 0.11 2.16 5.82 86.36 0.50 2.66 16 25 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 0.92 5.97 -2.39 -0.01 0.91 16 28 H 0.08 1.15 8.07 -2.39 -0.02 1.13 16 29 H 0.08 1.13 8.13 -2.38 -0.02 1.11 16 30 H 0.43 2.51 9.10 -74.06 -0.67 1.84 16 31 H 0.10 2.03 5.97 -2.39 -0.01 2.02 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.10 3.44 7.70 -2.39 -0.02 3.42 16 34 H 0.10 3.42 7.96 -2.39 -0.02 3.40 16 35 H 0.01 0.47 7.16 -2.38 -0.02 0.45 16 36 H 0.01 0.42 7.53 -2.39 -0.02 0.40 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.90 7.00 -2.39 -0.02 1.88 16 Total: -1.00 -75.69 315.53 3.98 -71.71 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: 0.33 Total: 5.28 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 3.82 Total: -5.54 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -1.69 Total: -75.32 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.37 Total: -44.51 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.88 Total: 48.38 kcal Total: -75.69 3.98 -71.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589268334.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.076 kcal (2) G-P(sol) polarization free energy of solvation -75.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds