Wall clock time and date at job start Mon Mar 30 2020 01:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49918 * 2 1 4 4 C 1.53036 * 109.49372 * 120.06480 * 2 1 3 5 5 C 1.53046 * 109.53927 * 181.34583 * 4 2 1 6 6 H 1.09000 * 109.49368 * 58.62076 * 5 4 2 7 7 C 1.50699 * 109.49779 * 178.68264 * 5 4 2 8 8 O 1.20823 * 120.00366 * 359.97438 * 7 5 4 9 9 O 1.34233 * 119.99719 * 180.02562 * 7 5 4 10 10 C 1.53189 * 109.31336 * 298.63505 * 5 4 2 11 11 N 1.46935 * 108.77418 * 54.63373 * 10 5 4 12 12 C 1.34776 * 120.63153 * 126.36927 * 11 10 5 13 13 O 1.21280 * 119.99957 * 180.02562 * 12 11 10 14 14 C 1.50701 * 119.99631 * 359.97438 * 12 11 10 15 15 C 1.53008 * 109.46862 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47205 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99834 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99939 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00226 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99813 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47009 * 119.99921 * 20 18 16 23 23 H 1.48505 * 109.46782 * 239.99387 * 20 18 16 24 24 C 1.46996 * 118.75211 * 306.39315 * 11 10 5 25 25 H 1.09000 * 109.47337 * 300.00685 * 1 2 3 26 26 H 1.09003 * 109.46962 * 59.99855 * 1 2 3 27 27 H 1.08992 * 109.47809 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46472 * 301.36555 * 4 2 1 29 29 H 1.09003 * 109.46560 * 61.34241 * 4 2 1 30 30 H 0.96696 * 116.99848 * 180.02562 * 9 7 5 31 31 H 1.09001 * 109.58579 * 174.41761 * 10 5 4 32 32 H 1.08995 * 109.58826 * 294.84578 * 10 5 4 33 33 H 1.09001 * 109.47252 * 299.99468 * 14 12 11 34 34 H 1.09001 * 109.47367 * 60.00310 * 14 12 11 35 35 H 1.09001 * 109.46712 * 299.99748 * 15 14 12 36 36 H 1.09001 * 109.46918 * 59.99984 * 15 14 12 37 37 H 0.96995 * 120.00191 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.57815 * 293.82544 * 24 11 10 39 39 H 1.09007 * 109.62790 * 173.38404 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7227 1.2485 5 6 3.5708 -0.6941 1.2667 6 1 3.9154 0.3399 1.2554 7 6 4.0719 -1.3777 2.5127 8 8 3.2863 -1.8401 3.3057 9 8 5.3911 -1.4718 2.7421 10 6 4.1059 -1.4257 0.0317 11 7 3.5053 -0.8284 -1.1689 12 6 4.2819 -0.3847 -2.1771 13 8 3.7741 0.1068 -3.1627 14 6 5.7815 -0.4982 -2.0790 15 6 6.4202 0.0751 -3.3457 16 6 7.9197 -0.0389 -3.2481 17 1 8.3719 -0.4762 -2.3701 18 6 8.7142 0.4159 -4.2790 19 7 8.1635 0.9488 -5.3478 20 14 10.5730 0.2752 -4.1576 21 1 10.9382 -0.3557 -2.8638 22 1 11.0803 -0.5591 -5.2764 23 1 11.1780 1.6291 -4.2359 24 6 2.0413 -0.7235 -1.2497 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.6576 -0.2242 2.1390 29 1 1.6973 -1.7572 1.2354 30 1 5.6645 -1.9193 3.5545 31 1 5.1901 -1.3231 -0.0125 32 1 3.8386 -2.4809 0.0877 33 1 6.1322 0.0602 -1.2111 34 1 6.0604 -1.5466 -1.9736 35 1 6.0695 -0.4829 -4.2139 36 1 6.1412 1.1236 -3.4507 37 1 8.7225 1.2684 -6.0732 38 1 1.6057 -1.7215 -1.2982 39 1 1.7633 -0.1576 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589268336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:45 Heat of formation + Delta-G solvation = -150.338672 kcal Electronic energy + Delta-G solvation = -20993.744281 eV Core-core repulsion = 17707.376854 eV Total energy + Delta-G solvation = -3286.367427 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90868 -39.64586 -37.48508 -36.32185 -33.94399 -33.42535 -32.38901 -30.94681 -27.24386 -26.22359 -24.94137 -24.53465 -21.68108 -21.05982 -20.16044 -18.62734 -18.24098 -17.16189 -16.53062 -16.30825 -15.75639 -15.61914 -15.00353 -14.68532 -14.41339 -14.37041 -13.63849 -13.39476 -13.19236 -12.83486 -12.37937 -12.33797 -12.05891 -12.02279 -11.78653 -11.56915 -11.21270 -11.05740 -10.99776 -10.93545 -10.86566 -10.65974 -10.56008 -9.97770 -9.62721 -9.19225 -9.00875 -8.53844 -8.32135 -5.96288 -4.00617 1.91268 2.70384 3.15081 3.23054 3.32632 3.40037 3.43243 4.28810 4.46555 4.50871 4.56469 4.68526 4.91888 5.10050 5.15857 5.23150 5.36893 5.38947 5.43885 5.46723 5.57132 5.61082 5.71732 5.83177 5.92142 6.01442 6.13920 6.18180 6.19594 6.26017 6.63115 6.87629 7.63944 7.65159 7.74486 7.85155 8.06516 8.37692 8.67786 9.07895 9.63134 11.14733 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004616 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.693749 B = 6063.791912 C = 7265.889141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 H 0.078 0.922 4 C -0.098 4.098 5 C -0.099 4.099 6 H 0.116 0.884 7 C 0.489 3.511 8 O -0.516 6.516 9 O -0.510 6.510 10 C 0.122 3.878 11 N -0.625 5.625 12 C 0.515 3.485 13 O -0.529 6.529 14 C -0.130 4.130 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.112 3.888 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.411 0.589 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.023 0.977 36 H 0.024 0.976 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 -4.787 16.259 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.126 4.126 3 H 0.096 0.904 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.134 0.866 7 C 0.330 3.670 8 O -0.404 6.404 9 O -0.322 6.322 10 C -0.003 4.003 11 N -0.361 5.361 12 C 0.305 3.695 13 O -0.403 6.403 14 C -0.170 4.170 15 C -0.001 4.001 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.011 4.011 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.269 0.731 31 H 0.124 0.876 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.315 -4.364 15.360 20.166 hybrid contribution 1.232 -0.363 0.746 1.485 sum -11.084 -4.726 16.107 20.115 Atomic orbital electron populations 1.21731 0.93985 1.02170 1.02193 1.21522 0.96290 1.00350 0.94409 0.90357 1.21512 0.91202 1.02282 0.98520 1.21511 0.97967 1.01946 0.90446 0.86568 1.23313 0.79999 0.76246 0.87394 1.90716 1.56948 1.45188 1.47508 1.84589 1.26044 1.73786 1.47749 1.21545 1.00035 0.96265 0.82418 1.48290 1.06323 1.63066 1.18399 1.21627 0.90729 0.75788 0.81318 1.90666 1.75737 1.43270 1.30663 1.21919 0.88079 1.02786 1.04229 1.18920 0.94141 0.96897 0.90158 1.21251 0.91460 1.40367 1.03337 0.92513 1.25019 0.98663 0.95268 0.95398 1.70006 1.35121 1.40629 1.07093 0.86546 0.85775 0.77711 0.77996 1.19718 1.21036 1.21036 1.21647 0.80218 1.00497 0.98736 0.92302 0.92067 0.92390 0.90697 0.90727 0.73053 0.87553 0.91095 0.90079 0.90158 0.95813 0.95807 0.93010 0.91833 0.88663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.20 37.16 0.34 -0.80 16 2 C -0.11 -1.03 2.87 -90.51 -0.26 -1.29 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.10 -0.91 3.74 -26.69 -0.10 -1.01 16 5 C -0.10 -0.97 2.78 -91.65 -0.25 -1.22 16 6 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 7 C 0.49 4.90 7.63 36.01 0.27 5.17 16 8 O -0.52 -6.41 16.74 -18.75 -0.31 -6.72 16 9 O -0.51 -4.21 13.36 -39.26 -0.52 -4.73 16 10 C 0.12 1.35 5.56 -3.71 -0.02 1.33 16 11 N -0.63 -8.86 2.97 -172.71 -0.51 -9.37 16 12 C 0.51 9.79 7.70 -10.99 -0.08 9.71 16 13 O -0.53 -12.26 15.40 5.56 0.09 -12.17 16 14 C -0.13 -2.60 3.99 -27.88 -0.11 -2.71 16 15 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 16 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -27.27 13.29 55.43 0.74 -26.54 16 20 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 C 0.11 1.36 5.72 -3.67 -0.02 1.34 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.68 8.07 -51.93 -0.42 0.26 16 29 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 30 H 0.41 1.65 9.10 45.56 0.41 2.06 16 31 H 0.11 1.20 5.93 -51.93 -0.31 0.89 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.47 7.69 -51.93 -0.40 1.07 16 34 H 0.08 1.46 7.94 -51.93 -0.41 1.05 16 35 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.35 7.01 -51.92 -0.36 0.99 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -35.23 323.73 -6.69 -41.92 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.25 Total: -1.63 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.76 Total: -2.11 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.22 Total: -35.91 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.75 Total: -23.63 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.23 -6.69 -41.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589268336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.417 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds