Wall clock time and date at job start Mon Mar 30 2020 01:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49918 * 2 1 4 4 C 1.53036 * 109.49372 * 120.06480 * 2 1 3 5 5 C 1.53046 * 109.53927 * 181.34583 * 4 2 1 6 6 H 1.09000 * 109.49368 * 58.62076 * 5 4 2 7 7 C 1.50699 * 109.49779 * 178.68264 * 5 4 2 8 8 O 1.20823 * 120.00366 * 359.97438 * 7 5 4 9 9 O 1.34233 * 119.99719 * 180.02562 * 7 5 4 10 10 C 1.53189 * 109.31336 * 298.63505 * 5 4 2 11 11 N 1.46935 * 108.77418 * 54.63373 * 10 5 4 12 12 C 1.34776 * 120.63153 * 126.36927 * 11 10 5 13 13 O 1.21280 * 119.99957 * 180.02562 * 12 11 10 14 14 C 1.50701 * 119.99631 * 359.97438 * 12 11 10 15 15 C 1.53008 * 109.46862 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47205 * 180.02562 * 15 14 12 17 17 H 1.08004 * 119.99834 * 359.97438 * 16 15 14 18 18 C 1.37873 * 119.99939 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00226 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99813 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47284 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47009 * 119.99921 * 20 18 16 23 23 H 1.48505 * 109.46782 * 239.99387 * 20 18 16 24 24 C 1.46996 * 118.75211 * 306.39315 * 11 10 5 25 25 H 1.09000 * 109.47337 * 300.00685 * 1 2 3 26 26 H 1.09003 * 109.46962 * 59.99855 * 1 2 3 27 27 H 1.08992 * 109.47809 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46472 * 301.36555 * 4 2 1 29 29 H 1.09003 * 109.46560 * 61.34241 * 4 2 1 30 30 H 0.96696 * 116.99848 * 180.02562 * 9 7 5 31 31 H 1.09001 * 109.58579 * 174.41761 * 10 5 4 32 32 H 1.08995 * 109.58826 * 294.84578 * 10 5 4 33 33 H 1.09001 * 109.47252 * 299.99468 * 14 12 11 34 34 H 1.09001 * 109.47367 * 60.00310 * 14 12 11 35 35 H 1.09001 * 109.46712 * 299.99748 * 15 14 12 36 36 H 1.09001 * 109.46918 * 59.99984 * 15 14 12 37 37 H 0.96995 * 120.00191 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.57815 * 293.82544 * 24 11 10 39 39 H 1.09007 * 109.62790 * 173.38404 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0407 -0.7227 1.2485 5 6 3.5708 -0.6941 1.2667 6 1 3.9154 0.3399 1.2554 7 6 4.0719 -1.3777 2.5127 8 8 3.2863 -1.8401 3.3057 9 8 5.3911 -1.4718 2.7421 10 6 4.1059 -1.4257 0.0317 11 7 3.5053 -0.8284 -1.1689 12 6 4.2819 -0.3847 -2.1771 13 8 3.7741 0.1068 -3.1627 14 6 5.7815 -0.4982 -2.0790 15 6 6.4202 0.0751 -3.3457 16 6 7.9197 -0.0389 -3.2481 17 1 8.3719 -0.4762 -2.3701 18 6 8.7142 0.4159 -4.2790 19 7 8.1635 0.9488 -5.3478 20 14 10.5730 0.2752 -4.1576 21 1 10.9382 -0.3557 -2.8638 22 1 11.0803 -0.5591 -5.2764 23 1 11.1780 1.6291 -4.2359 24 6 2.0413 -0.7235 -1.2497 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0275 -0.0005 28 1 1.6576 -0.2242 2.1390 29 1 1.6973 -1.7572 1.2354 30 1 5.6645 -1.9193 3.5545 31 1 5.1901 -1.3231 -0.0125 32 1 3.8386 -2.4809 0.0877 33 1 6.1322 0.0602 -1.2111 34 1 6.0604 -1.5466 -1.9736 35 1 6.0695 -0.4829 -4.2139 36 1 6.1412 1.1236 -3.4507 37 1 8.7225 1.2684 -6.0732 38 1 1.6057 -1.7215 -1.2982 39 1 1.7633 -0.1576 -2.1390 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589268336.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:44 Heat of formation + Delta-G solvation = -174.709143 kcal Electronic energy + Delta-G solvation = -20994.801064 eV Core-core repulsion = 17707.376854 eV Total energy + Delta-G solvation = -3287.424210 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81086 -40.81897 -38.64365 -37.08525 -35.60563 -34.89672 -33.36000 -32.85458 -28.54717 -27.40672 -26.27303 -25.56473 -23.42613 -21.90629 -21.12482 -19.94849 -18.98802 -18.83511 -17.79407 -17.28025 -17.18392 -16.73062 -16.42615 -16.29411 -15.65256 -15.22230 -14.73442 -14.67341 -14.27356 -14.19480 -13.80910 -13.66211 -13.20303 -13.03813 -12.96628 -12.83050 -12.51849 -12.40697 -12.34879 -11.96832 -11.92428 -11.87974 -11.68917 -11.54186 -11.46752 -11.25695 -10.67411 -10.55645 -9.71987 -8.15903 -6.29598 1.12891 1.44374 1.45427 1.58776 1.65497 1.86716 2.20936 2.45276 3.17607 3.48523 3.61255 3.72950 3.83699 3.96466 4.12384 4.36329 4.39605 4.41849 4.49813 4.54764 4.66122 4.67016 4.73737 4.84222 4.88730 5.03552 5.09030 5.16311 5.27459 5.37940 5.50605 5.58256 5.62854 5.64578 5.87299 6.19639 6.31996 6.89040 7.01105 7.22608 7.40823 8.97058 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004616 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.693749 B = 6063.791912 C = 7265.889141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.068 0.932 4 C -0.092 4.092 5 C -0.096 4.096 6 H 0.120 0.880 7 C 0.500 3.500 8 O -0.540 6.540 9 O -0.509 6.509 10 C 0.116 3.884 11 N -0.612 5.612 12 C 0.514 3.486 13 O -0.584 6.584 14 C -0.118 4.118 15 C 0.042 3.958 16 C -0.539 4.539 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.972 3.028 21 H -0.251 1.251 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.107 3.893 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.430 0.570 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.104 0.896 35 H -0.018 1.018 36 H -0.018 1.018 37 H 0.262 0.738 38 H 0.083 0.917 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.020 -6.010 18.957 22.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.087 0.913 4 C -0.129 4.129 5 C -0.116 4.116 6 H 0.138 0.862 7 C 0.342 3.658 8 O -0.430 6.430 9 O -0.323 6.323 10 C -0.006 4.006 11 N -0.345 5.345 12 C 0.305 3.695 13 O -0.464 6.464 14 C -0.158 4.158 15 C 0.004 3.996 16 C -0.577 4.577 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.579 5.579 20 Si 0.796 3.204 21 H -0.175 1.175 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.015 4.015 25 H 0.089 0.911 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.292 0.708 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.000 1.000 36 H 0.001 0.999 37 H 0.071 0.929 38 H 0.101 0.899 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.575 -5.623 18.142 22.242 hybrid contribution 0.964 -0.003 -0.054 0.966 sum -10.611 -5.626 18.088 21.712 Atomic orbital electron populations 1.21716 0.92394 1.02982 1.02660 1.21438 0.97527 0.99421 0.93293 0.91331 1.21471 0.90815 1.02445 0.98212 1.21451 0.98331 1.01972 0.89825 0.86233 1.23119 0.80274 0.75504 0.86879 1.90719 1.57673 1.46296 1.48337 1.84545 1.24912 1.73756 1.49052 1.21784 1.00152 0.97286 0.81423 1.48181 1.07021 1.61284 1.18005 1.21387 0.90702 0.75763 0.81683 1.90649 1.76431 1.46149 1.33129 1.21676 0.88732 1.03943 1.01413 1.18705 0.94621 0.94193 0.92052 1.21737 0.92117 1.39927 1.03952 0.90467 1.26114 1.04676 0.94695 0.94871 1.70183 1.37460 1.41990 1.08242 0.85294 0.78449 0.77795 0.78831 1.17455 1.20763 1.20743 1.21836 0.78868 1.01604 0.99161 0.91064 0.92421 0.91412 0.89985 0.90330 0.70815 0.87299 0.89114 0.87665 0.87811 0.99995 0.99920 0.92919 0.89891 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.20 71.98 0.66 -1.30 16 2 C -0.10 -1.74 2.87 -10.72 -0.03 -1.77 16 3 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.09 -1.48 3.74 30.62 0.11 -1.36 16 5 C -0.10 -1.63 2.78 -11.46 -0.03 -1.66 16 6 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 7 C 0.50 8.55 7.63 71.24 0.54 9.09 16 8 O -0.54 -11.99 16.74 21.97 0.37 -11.62 16 9 O -0.51 -6.74 13.36 -51.44 -0.69 -7.43 16 10 C 0.12 2.29 5.56 86.36 0.48 2.77 16 11 N -0.61 -16.71 2.97 -818.71 -2.43 -19.14 16 12 C 0.51 19.83 7.70 87.66 0.67 20.50 16 13 O -0.58 -28.55 15.40 -3.03 -0.05 -28.60 16 14 C -0.12 -4.67 3.99 29.85 0.12 -4.55 16 15 C 0.04 2.32 4.26 29.85 0.13 2.45 16 16 C -0.54 -30.34 9.11 25.60 0.23 -30.10 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 18 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 19 N -0.94 -59.36 13.29 21.45 0.28 -59.07 16 20 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 21 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 C 0.11 2.53 5.72 86.35 0.49 3.03 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 1.26 8.07 -2.39 -0.02 1.24 16 29 H 0.08 1.24 8.13 -2.39 -0.02 1.22 16 30 H 0.43 2.06 9.10 -74.06 -0.67 1.39 16 31 H 0.11 2.12 5.93 -2.39 -0.01 2.11 16 32 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 3.63 7.69 -2.39 -0.02 3.62 16 34 H 0.10 3.60 7.94 -2.39 -0.02 3.58 16 35 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 36 H -0.02 -1.11 8.10 -2.39 -0.02 -1.12 16 37 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 38 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.07 2.05 7.01 -2.38 -0.02 2.03 16 Total: -1.00 -79.31 323.73 3.73 -75.58 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.37 Total: 7.18 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 3.85 Total: -2.82 kcal Atomic # 7 Polarization: -76.07 SS G_CDS: -2.15 Total: -78.22 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.37 Total: -47.65 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -79.31 3.73 -75.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589268336.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.134 kcal (2) G-P(sol) polarization free energy of solvation -79.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds