Wall clock time and date at job start Mon Mar 30 2020 01:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49671 * 2 1 4 4 C 1.53042 * 109.52646 * 239.91491 * 2 1 3 5 5 C 1.53046 * 109.53891 * 301.39664 * 4 2 1 6 6 C 1.53617 * 109.24148 * 298.51336 * 5 4 2 7 7 N 1.46922 * 108.54890 * 54.85403 * 6 5 4 8 8 C 1.34780 * 120.63604 * 126.36326 * 7 6 5 9 9 O 1.21276 * 120.00314 * 173.47098 * 8 7 6 10 10 C 1.50701 * 119.99459 * 353.48147 * 8 7 6 11 11 C 1.53001 * 109.46847 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00001 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99820 * 179.72213 * 12 11 10 15 15 N 1.31518 * 120.00043 * 180.27307 * 14 12 11 16 16 Si 1.86807 * 120.00165 * 0.27747 * 14 12 11 17 17 H 1.48502 * 109.46888 * 89.99289 * 16 14 12 18 18 H 1.48498 * 109.47268 * 209.99615 * 16 14 12 19 19 H 1.48498 * 109.46775 * 329.99955 * 16 14 12 20 20 C 1.46930 * 118.73663 * 306.09553 * 7 6 5 21 21 H 1.08998 * 109.59061 * 293.92781 * 20 7 6 22 22 C 1.50701 * 109.58631 * 173.64113 * 20 7 6 23 23 O 1.20825 * 120.00413 * 301.84054 * 22 20 7 24 24 O 1.34236 * 119.99982 * 121.84045 * 22 20 7 25 25 H 1.08994 * 109.47620 * 299.93745 * 1 2 3 26 26 H 1.08999 * 109.47018 * 59.94355 * 1 2 3 27 27 H 1.09003 * 109.46943 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.45905 * 61.41795 * 4 2 1 29 29 H 1.08997 * 109.45889 * 181.37666 * 4 2 1 30 30 H 1.08996 * 109.49231 * 58.58769 * 5 4 2 31 31 H 1.08992 * 109.49539 * 178.65440 * 5 4 2 32 32 H 1.09005 * 109.74255 * 295.11963 * 6 5 4 33 33 H 1.08995 * 109.66659 * 174.54853 * 6 5 4 34 34 H 1.09004 * 109.47504 * 59.99588 * 10 8 7 35 35 H 1.08995 * 109.46815 * 299.99561 * 10 8 7 36 36 H 1.08992 * 109.47076 * 60.00113 * 11 10 8 37 37 H 1.09002 * 109.47005 * 299.99710 * 11 10 8 38 38 H 0.97003 * 119.99793 * 180.02562 * 15 14 12 39 39 H 0.96691 * 117.00320 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0415 -0.7231 -1.2481 5 6 1.5044 -2.1561 -1.2657 6 6 2.0202 -2.9053 -0.0278 7 7 1.6522 -2.1380 1.1699 8 6 0.9753 -2.7220 2.1786 9 8 0.7806 -2.1145 3.2100 10 6 0.4607 -4.1300 2.0247 11 6 -0.2650 -4.5504 3.3044 12 6 -0.7791 -5.9587 3.1507 13 1 -0.6060 -6.4995 2.2321 14 6 -1.4660 -6.5584 4.1849 15 7 -1.9100 -7.7893 4.0528 16 14 -1.7662 -5.6227 5.7736 17 1 -3.0511 -4.8844 5.6780 18 1 -1.8281 -6.5795 6.9075 19 1 -0.6579 -4.6601 5.9979 20 6 2.0413 -0.7234 1.2499 21 1 3.1273 -0.6454 1.3011 22 6 1.4314 -0.1004 2.4791 23 8 0.2326 -0.1089 2.6293 24 8 2.2201 0.4641 3.4071 25 1 -0.3634 0.5128 0.8905 26 1 -0.3633 0.5147 -0.8895 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6995 -0.1961 -2.1388 29 1 3.1312 -0.7438 -1.2347 30 1 0.4147 -2.1362 -1.2541 31 1 1.8496 -2.6629 -2.1668 32 1 3.1047 -3.0015 -0.0810 33 1 1.5654 -3.8947 0.0182 34 1 1.2972 -4.8049 1.8434 35 1 -0.2307 -4.1741 1.1833 36 1 -1.1015 -3.8757 3.4861 37 1 0.4268 -4.5063 4.1456 38 1 -2.3936 -8.2111 4.7803 39 1 1.7832 0.8505 4.1783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589326068.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:13 Heat of formation + Delta-G solvation = -125.762171 kcal Electronic energy + Delta-G solvation = -22047.878357 eV Core-core repulsion = 18762.576647 eV Total energy + Delta-G solvation = -3285.301710 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.22375 -38.90798 -37.74719 -35.78833 -33.71088 -33.41414 -32.02449 -31.17192 -27.92383 -26.32456 -25.45685 -23.69022 -22.01297 -21.04073 -19.61722 -18.49116 -18.03130 -17.28159 -16.44875 -16.16466 -15.95492 -15.17902 -15.01478 -14.59050 -14.34530 -13.99996 -13.64055 -13.47425 -13.22025 -12.92733 -12.57737 -12.47325 -12.06167 -11.88358 -11.49859 -11.40368 -11.31629 -11.11906 -11.00290 -10.88066 -10.62124 -10.12966 -10.00381 -9.81722 -9.77367 -9.19621 -9.10995 -8.61198 -8.49634 -6.02770 -4.01386 2.34329 2.90985 3.11586 3.27772 3.39179 3.45353 3.56727 4.38935 4.51836 4.55146 4.70737 4.78266 4.92109 5.11957 5.24110 5.32201 5.33096 5.36160 5.46026 5.54448 5.60953 5.71011 5.75717 5.89204 5.99929 6.01522 6.05183 6.06431 6.41620 6.46233 6.65892 6.86648 7.37372 7.43351 7.46699 7.78943 8.19177 8.46618 8.55943 8.99723 9.60593 11.09977 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.005813 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.705503 B = 4815.415898 C = 5554.207475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.094 4.094 3 H 0.083 0.917 4 C -0.110 4.110 5 C -0.142 4.142 6 C 0.111 3.889 7 N -0.614 5.614 8 C 0.510 3.490 9 O -0.514 6.514 10 C -0.115 4.115 11 C 0.002 3.998 12 C -0.524 4.524 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.262 1.262 20 C 0.160 3.840 21 H 0.095 0.905 22 C 0.490 3.510 23 O -0.486 6.486 24 O -0.523 6.523 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.020 0.980 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.051 16.250 -11.714 22.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.113 4.113 3 H 0.101 0.899 4 C -0.148 4.148 5 C -0.180 4.180 6 C -0.011 4.011 7 N -0.353 5.353 8 C 0.301 3.699 9 O -0.389 6.389 10 C -0.155 4.155 11 C -0.036 4.036 12 C -0.562 4.562 13 H 0.091 0.909 14 C -0.131 4.131 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.186 1.186 20 C 0.055 3.945 21 H 0.113 0.887 22 C 0.332 3.668 23 O -0.372 6.372 24 O -0.335 6.335 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 10.686 16.242 -11.335 22.505 hybrid contribution -0.453 0.577 1.297 1.490 sum 10.232 16.819 -10.038 22.098 Atomic orbital electron populations 1.22108 0.93419 1.03469 1.02581 1.21399 0.98080 0.98947 0.92906 0.89903 1.21521 1.00533 0.95821 0.96883 1.22097 1.02354 0.95701 0.97847 1.21892 1.00282 0.95763 0.83187 1.48228 1.58766 1.08197 1.20090 1.21694 0.75915 0.90086 0.82191 1.90668 1.56083 1.63939 1.28219 1.21663 1.01070 0.89296 1.03434 1.19380 0.95643 0.96771 0.91808 1.21087 1.35487 0.97070 1.02552 0.90908 1.24951 0.94945 0.94675 0.98539 1.69911 1.38288 1.12957 1.33064 0.86806 0.79586 0.79968 0.83252 1.20226 1.21428 1.18631 1.20533 0.99680 0.83096 0.91142 0.88710 1.22402 0.85597 0.75306 0.83543 1.90674 1.16554 1.54105 1.75890 1.84406 1.44909 1.70519 1.33689 0.90403 0.92985 0.91763 0.91029 0.91495 0.90519 0.90384 0.91116 0.88268 0.89523 0.89468 0.96181 0.95933 0.92718 0.73294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 7.99 37.16 0.30 -1.65 16 2 C -0.09 -0.95 2.80 -90.50 -0.25 -1.20 16 3 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.11 -0.84 5.43 -26.69 -0.14 -0.99 16 5 C -0.14 -1.18 5.76 -26.39 -0.15 -1.34 16 6 C 0.11 1.13 6.38 -3.49 -0.02 1.11 16 7 N -0.61 -8.68 2.41 -166.27 -0.40 -9.08 16 8 C 0.51 9.69 7.35 -10.98 -0.08 9.61 16 9 O -0.51 -11.68 11.63 -20.10 -0.23 -11.91 16 10 C -0.12 -2.28 4.00 -27.88 -0.11 -2.39 16 11 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 12 C -0.52 -15.13 9.66 -34.44 -0.33 -15.47 16 13 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 15 N -0.90 -28.19 13.96 55.43 0.77 -27.42 16 16 Si 0.88 23.08 27.47 -169.99 -4.67 18.41 16 17 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 18 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 19 H -0.26 -6.90 6.54 56.52 0.37 -6.53 16 20 C 0.16 2.04 3.09 -68.75 -0.21 1.83 16 21 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 22 C 0.49 7.73 4.90 36.01 0.18 7.91 16 23 O -0.49 -9.36 12.26 -27.02 -0.33 -9.69 16 24 O -0.52 -7.04 13.42 -39.97 -0.54 -7.58 16 25 H 0.08 1.15 5.52 -51.93 -0.29 0.87 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.90 5.97 -51.93 -0.31 0.59 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.75 6.34 -51.93 -0.33 0.42 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.10 1.03 5.93 -51.93 -0.31 0.73 16 34 H 0.09 1.55 7.68 -51.93 -0.40 1.15 16 35 H 0.09 1.61 7.95 -51.93 -0.41 1.20 16 36 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 37 H 0.02 0.60 7.15 -51.93 -0.37 0.23 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.41 4.14 9.10 45.56 0.41 4.56 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -36.56 304.50 -6.77 -43.33 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.94 Total: -0.04 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -1.03 Total: -0.60 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.37 Total: -36.50 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.10 Total: -29.19 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.67 Total: 18.41 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.56 -6.77 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589326068.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.429 kcal (2) G-P(sol) polarization free energy of solvation -36.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds