Wall clock time and date at job start Mon Mar 30 2020 01:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.49671 * 2 1 4 4 C 1.53042 * 109.52646 * 239.91491 * 2 1 3 5 5 C 1.53046 * 109.53891 * 301.39664 * 4 2 1 6 6 C 1.53617 * 109.24148 * 298.51336 * 5 4 2 7 7 N 1.46922 * 108.54890 * 54.85403 * 6 5 4 8 8 C 1.34780 * 120.63604 * 126.36326 * 7 6 5 9 9 O 1.21276 * 120.00314 * 173.47098 * 8 7 6 10 10 C 1.50701 * 119.99459 * 353.48147 * 8 7 6 11 11 C 1.53001 * 109.46847 * 179.97438 * 10 8 7 12 12 C 1.50701 * 109.46847 * 180.02562 * 11 10 8 13 13 H 1.07996 * 120.00001 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99820 * 179.72213 * 12 11 10 15 15 N 1.31518 * 120.00043 * 180.27307 * 14 12 11 16 16 Si 1.86807 * 120.00165 * 0.27747 * 14 12 11 17 17 H 1.48502 * 109.46888 * 89.99289 * 16 14 12 18 18 H 1.48498 * 109.47268 * 209.99615 * 16 14 12 19 19 H 1.48498 * 109.46775 * 329.99955 * 16 14 12 20 20 C 1.46930 * 118.73663 * 306.09553 * 7 6 5 21 21 H 1.08998 * 109.59061 * 293.92781 * 20 7 6 22 22 C 1.50701 * 109.58631 * 173.64113 * 20 7 6 23 23 O 1.20825 * 120.00413 * 301.84054 * 22 20 7 24 24 O 1.34236 * 119.99982 * 121.84045 * 22 20 7 25 25 H 1.08994 * 109.47620 * 299.93745 * 1 2 3 26 26 H 1.08999 * 109.47018 * 59.94355 * 1 2 3 27 27 H 1.09003 * 109.46943 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.45905 * 61.41795 * 4 2 1 29 29 H 1.08997 * 109.45889 * 181.37666 * 4 2 1 30 30 H 1.08996 * 109.49231 * 58.58769 * 5 4 2 31 31 H 1.08992 * 109.49539 * 178.65440 * 5 4 2 32 32 H 1.09005 * 109.74255 * 295.11963 * 6 5 4 33 33 H 1.08995 * 109.66659 * 174.54853 * 6 5 4 34 34 H 1.09004 * 109.47504 * 59.99588 * 10 8 7 35 35 H 1.08995 * 109.46815 * 299.99561 * 10 8 7 36 36 H 1.08992 * 109.47076 * 60.00113 * 11 10 8 37 37 H 1.09002 * 109.47005 * 299.99710 * 11 10 8 38 38 H 0.97003 * 119.99793 * 180.02562 * 15 14 12 39 39 H 0.96691 * 117.00320 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0415 -0.7231 -1.2481 5 6 1.5044 -2.1561 -1.2657 6 6 2.0202 -2.9053 -0.0278 7 7 1.6522 -2.1380 1.1699 8 6 0.9753 -2.7220 2.1786 9 8 0.7806 -2.1145 3.2100 10 6 0.4607 -4.1300 2.0247 11 6 -0.2650 -4.5504 3.3044 12 6 -0.7791 -5.9587 3.1507 13 1 -0.6060 -6.4995 2.2321 14 6 -1.4660 -6.5584 4.1849 15 7 -1.9100 -7.7893 4.0528 16 14 -1.7662 -5.6227 5.7736 17 1 -3.0511 -4.8844 5.6780 18 1 -1.8281 -6.5795 6.9075 19 1 -0.6579 -4.6601 5.9979 20 6 2.0413 -0.7234 1.2499 21 1 3.1273 -0.6454 1.3011 22 6 1.4314 -0.1004 2.4791 23 8 0.2326 -0.1089 2.6293 24 8 2.2201 0.4641 3.4071 25 1 -0.3634 0.5128 0.8905 26 1 -0.3633 0.5147 -0.8895 27 1 -0.3633 -1.0277 -0.0005 28 1 1.6995 -0.1961 -2.1388 29 1 3.1312 -0.7438 -1.2347 30 1 0.4147 -2.1362 -1.2541 31 1 1.8496 -2.6629 -2.1668 32 1 3.1047 -3.0015 -0.0810 33 1 1.5654 -3.8947 0.0182 34 1 1.2972 -4.8049 1.8434 35 1 -0.2307 -4.1741 1.1833 36 1 -1.1015 -3.8757 3.4861 37 1 0.4268 -4.5063 4.1456 38 1 -2.3936 -8.2111 4.7803 39 1 1.7832 0.8505 4.1783 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589326068.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:13 Heat of formation + Delta-G solvation = -151.066447 kcal Electronic energy + Delta-G solvation = -22048.975633 eV Core-core repulsion = 18762.576647 eV Total energy + Delta-G solvation = -3286.398985 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.37203 -40.14423 -38.87889 -36.96276 -35.62438 -34.67719 -33.37345 -32.69666 -29.21056 -27.70933 -26.65355 -24.64482 -23.56031 -22.32977 -20.92068 -19.62948 -19.25694 -18.94849 -18.03000 -17.38983 -17.10360 -16.41197 -16.26442 -16.10002 -15.58946 -15.34539 -14.90956 -14.65185 -14.59266 -14.30624 -13.95600 -13.86533 -13.45823 -13.03249 -12.96813 -12.81613 -12.37105 -12.25429 -12.18993 -11.99650 -11.94548 -11.83183 -11.74509 -11.45159 -11.34945 -10.92912 -10.81894 -10.56841 -9.70412 -8.35301 -6.37572 1.20602 1.28102 1.29898 1.45028 1.55727 2.02300 2.13327 2.30736 3.00292 3.53086 3.78672 3.83111 3.95817 4.06617 4.14096 4.28358 4.36471 4.40371 4.46260 4.59137 4.63843 4.73606 4.84056 4.94460 4.97031 5.10280 5.16932 5.26560 5.27307 5.29872 5.37697 5.50097 5.55485 5.56531 5.81704 6.18556 6.25019 6.67859 7.02174 7.20352 7.27808 8.80249 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.005813 C = 0.005040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.705503 B = 4815.415898 C = 5554.207475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 H 0.105 0.895 4 C -0.104 4.104 5 C -0.139 4.139 6 C 0.100 3.900 7 N -0.603 5.603 8 C 0.506 3.494 9 O -0.561 6.561 10 C -0.107 4.107 11 C 0.009 3.991 12 C -0.527 4.527 13 H 0.055 0.945 14 C 0.019 3.981 15 N -0.940 5.940 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.273 1.273 19 H -0.266 1.266 20 C 0.155 3.845 21 H 0.125 0.875 22 C 0.483 3.517 23 O -0.528 6.528 24 O -0.520 6.520 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.040 0.960 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.097 0.903 36 H -0.001 1.001 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.086 17.528 -13.464 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.108 4.108 3 H 0.123 0.877 4 C -0.141 4.141 5 C -0.177 4.177 6 C -0.021 4.021 7 N -0.339 5.339 8 C 0.297 3.703 9 O -0.441 6.441 10 C -0.147 4.147 11 C -0.029 4.029 12 C -0.565 4.565 13 H 0.073 0.927 14 C -0.180 4.180 15 N -0.580 5.580 16 Si 0.759 3.241 17 H -0.199 1.199 18 H -0.199 1.199 19 H -0.191 1.191 20 C 0.051 3.949 21 H 0.143 0.857 22 C 0.326 3.674 23 O -0.417 6.417 24 O -0.333 6.333 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.059 0.941 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.111 0.889 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.017 0.983 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 12.761 17.530 -13.132 25.349 hybrid contribution -1.062 0.196 1.771 2.075 sum 11.698 17.726 -11.361 24.086 Atomic orbital electron populations 1.22031 0.95508 1.01731 1.01970 1.21488 0.96176 1.00326 0.92775 0.87653 1.21547 1.01925 0.94745 0.95858 1.22099 1.01242 0.96521 0.97816 1.22292 1.02227 0.95310 0.82242 1.48176 1.56800 1.09123 1.19824 1.21378 0.76577 0.89584 0.82773 1.90651 1.58271 1.64825 1.30320 1.21457 1.01576 0.91014 1.00648 1.19188 0.95026 0.94369 0.94346 1.21387 1.34964 0.98415 1.01735 0.92718 1.25716 0.95052 0.95465 1.01720 1.70006 1.39391 1.14292 1.34336 0.85902 0.79230 0.78854 0.80117 1.19854 1.19853 1.19083 1.20950 1.01120 0.81919 0.90907 0.85727 1.23143 0.85288 0.74614 0.84367 1.90662 1.18494 1.55583 1.76990 1.84383 1.44665 1.70209 1.34011 0.93553 0.90948 0.94072 0.89200 0.89014 0.92457 0.87537 0.87989 0.88850 0.87465 0.88454 0.98252 0.97372 0.92293 0.72016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 7.99 71.98 0.58 -3.07 16 2 C -0.09 -1.51 2.80 -10.72 -0.03 -1.54 16 3 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.10 -1.08 5.43 30.62 0.17 -0.92 16 5 C -0.14 -1.80 5.76 30.82 0.18 -1.62 16 6 C 0.10 1.71 6.38 86.51 0.55 2.26 16 7 N -0.60 -15.93 2.41 -798.35 -1.92 -17.85 16 8 C 0.51 19.14 7.35 87.66 0.64 19.79 16 9 O -0.56 -26.01 11.63 21.52 0.25 -25.76 16 10 C -0.11 -4.25 4.00 29.85 0.12 -4.13 16 11 C 0.01 0.45 3.33 29.85 0.10 0.55 16 12 C -0.53 -30.99 9.66 25.60 0.25 -30.75 16 13 H 0.05 3.34 7.99 -2.91 -0.02 3.31 16 14 C 0.02 1.12 5.47 84.65 0.46 1.59 16 15 N -0.94 -59.37 13.96 21.45 0.30 -59.07 16 16 Si 0.93 48.33 27.47 68.60 1.88 50.22 16 17 H -0.27 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 19 H -0.27 -13.87 6.54 99.48 0.65 -13.22 16 20 C 0.16 3.58 3.09 44.23 0.14 3.72 16 21 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 22 C 0.48 15.01 4.90 71.24 0.35 15.36 16 23 O -0.53 -20.94 12.26 29.87 0.37 -20.57 16 24 O -0.52 -13.60 13.42 -50.80 -0.68 -14.28 16 25 H 0.05 1.40 5.52 -2.39 -0.01 1.38 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.04 1.14 5.97 -2.39 -0.01 1.12 16 28 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.99 6.34 -2.39 -0.02 0.98 16 31 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.09 1.72 5.93 -2.39 -0.01 1.71 16 34 H 0.11 3.74 7.68 -2.38 -0.02 3.72 16 35 H 0.10 3.60 7.95 -2.39 -0.02 3.58 16 36 H 0.00 -0.05 7.53 -2.39 -0.02 -0.07 16 37 H 0.01 0.43 7.15 -2.39 -0.02 0.42 16 38 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 39 H 0.42 8.49 9.10 -74.06 -0.67 7.82 16 Total: -1.00 -82.04 304.50 4.03 -78.01 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.33 Total: 8.06 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: 3.50 Total: 1.24 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -1.62 Total: -76.92 kcal Atomic # 8 Polarization: -60.55 SS G_CDS: -0.07 Total: -60.61 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.88 Total: 50.22 kcal Total: -82.04 4.03 -78.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589326068.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.055 kcal (2) G-P(sol) polarization free energy of solvation -82.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds