Wall clock time and date at job start Mon Mar 30 2020 01:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.45990 * 2 1 4 4 C 1.53040 * 109.46369 * 119.95892 * 2 1 3 5 5 C 1.53625 * 109.24190 * 58.53124 * 4 2 1 6 6 N 1.46924 * 108.54105 * 54.85373 * 5 4 2 7 7 C 1.34784 * 120.62625 * 126.37129 * 6 5 4 8 8 O 1.21283 * 119.99649 * 179.72165 * 7 6 5 9 9 C 1.50694 * 119.99988 * 359.72047 * 7 6 5 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 6 11 11 C 1.50694 * 109.47168 * 179.97438 * 10 9 7 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 C 1.46923 * 118.74100 * 306.09637 * 6 5 4 20 20 C 1.53037 * 109.45931 * 240.02922 * 2 1 3 21 21 H 1.09001 * 109.52607 * 181.37752 * 20 2 1 22 22 C 1.50705 * 109.49819 * 61.29225 * 20 2 1 23 23 O 1.20826 * 120.00131 * 0.16703 * 22 20 2 24 24 O 1.34234 * 119.99827 * 180.15872 * 22 20 2 25 25 H 1.09001 * 109.47134 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47075 * 299.97147 * 1 2 3 27 27 H 1.09003 * 109.47546 * 59.97084 * 1 2 3 28 28 H 1.08997 * 109.49557 * 178.60820 * 4 2 1 29 29 H 1.09001 * 109.49472 * 298.67116 * 4 2 1 30 30 H 1.09001 * 109.73774 * 295.12033 * 5 4 2 31 31 H 1.08992 * 109.66832 * 174.54948 * 5 4 2 32 32 H 1.09002 * 109.47054 * 60.00213 * 9 7 6 33 33 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 34 34 H 1.09007 * 109.46922 * 59.99702 * 10 9 7 35 35 H 1.09003 * 109.46836 * 300.00457 * 10 9 7 36 36 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.58694 * 173.64747 * 19 6 5 38 38 H 1.08997 * 109.58854 * 294.07052 * 19 6 5 39 39 H 0.96701 * 116.99552 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7206 1.2501 5 6 1.4947 -2.1567 1.2645 6 7 1.8625 -2.8088 0.0003 7 6 2.5156 -3.9878 0.0004 8 8 2.8092 -4.5184 -1.0499 9 6 2.8810 -4.6466 1.3056 10 6 3.6093 -5.9628 1.0261 11 6 3.9752 -6.6213 2.3313 12 1 3.7141 -6.1487 3.2666 13 6 4.6435 -7.8274 2.3314 14 7 4.9610 -8.4033 1.1925 15 14 5.0977 -8.6433 3.9492 16 1 5.8045 -9.9209 3.6780 17 1 5.9852 -7.7414 4.7264 18 1 3.8640 -8.9166 4.7293 19 6 1.4995 -2.1542 -1.2640 20 6 2.0397 -0.7208 -1.2500 21 1 3.1295 -0.7429 -1.2388 22 6 1.5639 0.0081 -2.4802 23 8 0.8889 1.0040 -2.3692 24 8 1.8902 -0.4491 -3.6994 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5134 0.8903 27 1 -0.3634 0.5143 -0.8897 28 1 3.1296 -0.7425 1.2383 29 1 1.6963 -0.1928 2.1398 30 1 0.4093 -2.1375 1.3634 31 1 1.9300 -2.7061 2.0992 32 1 1.9750 -4.8474 1.8773 33 1 3.5321 -3.9849 1.8768 34 1 4.5153 -5.7624 0.4541 35 1 2.9579 -6.6243 0.4550 36 1 5.4315 -9.2516 1.1926 37 1 1.9381 -2.7019 -2.0981 38 1 0.4146 -2.1348 -1.3671 39 1 1.5621 0.0522 -4.4585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589336339.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:44 Heat of formation + Delta-G solvation = -166.557166 kcal Electronic energy + Delta-G solvation = -21134.135201 eV Core-core repulsion = 17847.064487 eV Total energy + Delta-G solvation = -3287.070713 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.03970 -40.81568 -38.79006 -37.16313 -35.58548 -34.66980 -33.19320 -32.32088 -28.90207 -28.03752 -25.84931 -25.45064 -23.31519 -22.93903 -20.66013 -19.31077 -19.07833 -18.73110 -17.91754 -17.38533 -17.22526 -16.56689 -16.40611 -16.31363 -15.73043 -15.36370 -14.88722 -14.59338 -14.43483 -14.17371 -13.88137 -13.57384 -13.25905 -13.02307 -12.76154 -12.65231 -12.57869 -12.48955 -12.37395 -11.98879 -11.89242 -11.82646 -11.57296 -11.51893 -11.29672 -11.24196 -10.65983 -10.53425 -9.63857 -8.15402 -6.29443 1.06072 1.44380 1.48732 1.56331 1.67803 1.87159 2.21617 2.45667 3.17780 3.44053 3.64876 3.78977 3.90627 3.99472 4.13733 4.38012 4.40274 4.43624 4.49575 4.55914 4.68015 4.69443 4.74831 4.80229 4.95701 5.10528 5.14651 5.21017 5.29558 5.43024 5.49851 5.57374 5.65230 5.67229 5.87610 6.19777 6.37759 6.89011 6.95698 7.24827 7.40943 8.97115 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036416 B = 0.003886 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.701839 B = 7204.459153 C = 7761.850813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 H 0.086 0.914 4 C -0.123 4.123 5 C 0.093 3.907 6 N -0.610 5.610 7 C 0.512 3.488 8 O -0.587 6.587 9 C -0.114 4.114 10 C 0.042 3.958 11 C -0.542 4.542 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.938 5.938 15 Si 0.973 3.027 16 H -0.290 1.290 17 H -0.262 1.262 18 H -0.262 1.262 19 C 0.123 3.877 20 C -0.090 4.090 21 H 0.111 0.889 22 C 0.495 3.505 23 O -0.527 6.527 24 O -0.515 6.515 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.106 0.894 34 H -0.019 1.019 35 H -0.019 1.019 36 H 0.262 0.738 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.437 20.759 -0.560 22.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.089 4.089 3 H 0.104 0.896 4 C -0.161 4.161 5 C -0.028 4.028 6 N -0.343 5.343 7 C 0.303 3.697 8 O -0.467 6.467 9 C -0.154 4.154 10 C 0.004 3.996 11 C -0.580 4.580 12 H 0.096 0.904 13 C -0.204 4.204 14 N -0.578 5.578 15 Si 0.797 3.203 16 H -0.215 1.215 17 H -0.186 1.186 18 H -0.187 1.187 19 C 0.000 4.000 20 C -0.110 4.110 21 H 0.129 0.871 22 C 0.337 3.663 23 O -0.417 6.417 24 O -0.329 6.329 25 H 0.074 0.926 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.129 0.871 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.000 1.000 35 H -0.001 1.001 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -9.251 20.385 -0.823 22.401 hybrid contribution 0.299 -0.485 -0.529 0.777 sum -8.952 19.901 -1.353 21.863 Atomic orbital electron populations 1.22109 0.94052 1.02081 1.03410 1.20982 0.97177 0.99276 0.91483 0.89559 1.22052 1.01378 0.94309 0.98362 1.22271 1.01781 0.93905 0.84827 1.48183 1.57415 1.20745 1.07978 1.21446 0.75828 0.80440 0.91997 1.90654 1.55549 1.64799 1.35682 1.21641 1.02551 0.97690 0.93506 1.18699 0.93707 0.91625 0.95530 1.21687 1.36977 1.05844 0.93510 0.90420 1.26130 0.95745 0.98169 1.00327 1.70178 1.41267 1.18155 1.28247 0.85386 0.78841 0.77354 0.78736 1.21538 1.18615 1.18665 1.21358 1.00403 0.90508 0.87752 1.21489 1.03354 0.95173 0.90995 0.87077 1.23228 0.75822 0.82218 0.85006 1.90665 1.36929 1.26619 1.87449 1.84576 1.72680 1.58425 1.17246 0.92570 0.90679 0.92168 0.91242 0.87064 0.89083 0.88064 0.87741 0.87596 1.00025 1.00089 0.92919 0.90470 0.89887 0.70954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 8.13 71.98 0.59 -1.89 16 2 C -0.07 -1.12 2.35 -10.77 -0.03 -1.15 16 3 H 0.09 1.34 8.07 -2.38 -0.02 1.32 16 4 C -0.12 -1.72 5.64 30.82 0.17 -1.55 16 5 C 0.09 1.68 5.90 86.51 0.51 2.20 16 6 N -0.61 -16.50 2.97 -818.09 -2.43 -18.93 16 7 C 0.51 19.70 7.70 87.65 0.67 20.38 16 8 O -0.59 -28.80 15.40 -3.04 -0.05 -28.85 16 9 C -0.11 -4.48 3.98 29.85 0.12 -4.36 16 10 C 0.04 2.32 4.26 29.85 0.13 2.45 16 11 C -0.54 -30.44 9.11 25.60 0.23 -30.21 16 12 H 0.08 3.92 7.74 -2.91 -0.02 3.89 16 13 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 14 N -0.94 -59.41 13.29 21.45 0.28 -59.13 16 15 Si 0.97 43.77 29.54 68.60 2.03 45.79 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 17 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 18 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 19 C 0.12 3.03 5.18 86.36 0.45 3.48 16 20 C -0.09 -1.79 2.56 -11.46 -0.03 -1.82 16 21 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 22 C 0.49 9.84 7.34 71.24 0.52 10.37 16 23 O -0.53 -12.09 14.51 21.96 0.32 -11.77 16 24 O -0.52 -8.83 13.35 -51.46 -0.69 -9.52 16 25 H 0.06 0.88 4.97 -2.39 -0.01 0.87 16 26 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.06 1.15 5.64 -2.39 -0.01 1.14 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 1.34 6.69 -2.39 -0.02 1.33 16 31 H 0.10 1.77 5.93 -2.39 -0.01 1.75 16 32 H 0.10 3.57 7.93 -2.39 -0.02 3.55 16 33 H 0.11 3.60 7.70 -2.39 -0.02 3.58 16 34 H -0.02 -1.17 8.10 -2.38 -0.02 -1.19 16 35 H -0.02 -1.22 8.10 -2.39 -0.02 -1.24 16 36 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 37 H 0.08 2.36 7.01 -2.39 -0.02 2.34 16 38 H 0.08 1.82 6.69 -2.39 -0.02 1.80 16 39 H 0.43 3.28 9.10 -74.06 -0.67 2.61 16 Total: -1.00 -79.35 312.52 3.66 -75.69 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.39 Total: 8.72 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 3.80 Total: -2.01 kcal Atomic # 7 Polarization: -75.91 SS G_CDS: -2.14 Total: -78.05 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.42 Total: -50.14 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -79.35 3.66 -75.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589336339.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.868 kcal (2) G-P(sol) polarization free energy of solvation -79.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds