Wall clock time and date at job start Mon Mar 30 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49456 * 2 1 4 4 C 1.53190 * 109.49553 * 239.94413 * 2 1 3 5 5 N 1.46923 * 108.77653 * 185.40982 * 4 2 1 6 6 C 1.34779 * 120.63485 * 233.58413 * 5 4 2 7 7 O 1.21279 * 119.99574 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00208 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47055 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.46935 * 118.73804 * 53.86108 * 5 4 2 19 19 C 1.53626 * 108.54016 * 306.09466 * 18 5 4 20 20 C 1.53030 * 109.50220 * 120.10349 * 2 1 3 21 21 H 1.09008 * 109.46176 * 61.29470 * 20 2 1 22 22 C 1.50700 * 109.46047 * 301.32513 * 20 2 1 23 23 O 1.20823 * 120.00135 * 359.97438 * 22 20 2 24 24 O 1.34229 * 120.00064 * 180.02562 * 22 20 2 25 25 H 1.08995 * 109.47237 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47044 * 300.05847 * 1 2 3 27 27 H 1.09003 * 109.47580 * 60.05613 * 1 2 3 28 28 H 1.09002 * 109.58856 * 65.62269 * 4 2 1 29 29 H 1.09000 * 109.58640 * 305.19648 * 4 2 1 30 30 H 1.09001 * 109.47328 * 60.00147 * 8 6 5 31 31 H 1.09004 * 109.47043 * 299.99957 * 8 6 5 32 32 H 1.09001 * 109.46832 * 59.99966 * 9 8 6 33 33 H 1.09000 * 109.47611 * 300.00263 * 9 8 6 34 34 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.58473 * 65.92488 * 18 5 4 36 36 H 1.08998 * 109.58702 * 186.35190 * 18 5 4 37 37 H 1.09006 * 109.63397 * 294.86609 * 19 18 5 38 38 H 1.08997 * 109.43048 * 174.72256 * 19 18 5 39 39 H 0.96705 * 117.00324 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2499 5 7 3.5045 -0.8286 -1.1700 6 6 4.2810 -0.3855 -2.1786 7 8 3.7729 0.1054 -3.1644 8 6 5.7804 -0.5011 -2.0820 9 6 6.4188 0.0707 -3.3494 10 6 7.9183 -0.0443 -3.2525 11 1 8.3706 -0.4819 -2.3749 12 6 8.7126 0.4091 -4.2842 13 7 10.0211 0.3083 -4.1999 14 14 7.9301 1.1653 -5.8025 15 1 7.7803 2.6295 -5.6051 16 1 8.7936 0.9108 -6.9835 17 1 6.5940 0.5568 -6.0260 18 6 4.1051 -1.4318 0.0276 19 6 3.5709 -0.6955 1.2656 20 6 2.0409 -0.7235 1.2479 21 1 1.6968 -1.7578 1.2345 22 6 1.5121 -0.0345 2.4795 23 8 0.8003 0.9357 2.3704 24 8 1.8328 -0.4980 3.6977 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5148 0.8895 27 1 -0.3634 0.5130 -0.8905 28 1 1.7636 -0.1570 -2.1390 29 1 1.6052 -1.7210 -1.2987 30 1 6.0580 -1.5499 -1.9772 31 1 6.1326 0.0564 -1.2140 32 1 6.1412 1.1195 -3.4546 33 1 6.0665 -0.4870 -4.2171 34 1 10.5799 0.6269 -4.9259 35 1 3.8339 -2.4862 0.0808 36 1 5.1896 -1.3332 -0.0183 37 1 3.9159 0.3385 1.2541 38 1 3.9335 -1.1905 2.1664 39 1 1.4694 -0.0232 4.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589371583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:33 Heat of formation + Delta-G solvation = -142.564413 kcal Electronic energy + Delta-G solvation = -21002.548887 eV Core-core repulsion = 17716.518578 eV Total energy + Delta-G solvation = -3286.030310 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.08994 -39.71781 -37.52426 -36.42598 -33.88376 -33.44322 -32.25462 -31.22817 -27.49498 -27.14968 -25.17534 -22.81127 -22.47777 -21.18723 -20.08458 -18.66056 -18.35134 -17.41685 -16.95416 -16.15186 -16.03885 -15.56396 -15.23268 -14.66021 -14.19103 -14.04290 -13.81343 -13.47911 -13.28520 -12.85321 -12.59373 -12.47546 -12.22175 -12.16682 -11.96818 -11.65961 -11.40708 -11.26173 -11.05738 -10.96498 -10.77217 -10.44098 -10.13157 -10.03329 -9.78354 -9.24357 -9.14932 -8.57595 -8.50018 -6.03233 -4.02037 1.87783 2.68342 3.05603 3.15426 3.38268 3.44895 3.55849 4.18503 4.34626 4.51093 4.60297 4.70960 4.97032 5.01560 5.05728 5.26833 5.29418 5.32201 5.32603 5.44404 5.49539 5.59329 5.72125 5.80226 5.91159 5.98193 6.02730 6.05187 6.08318 6.32436 6.58103 6.69734 7.36089 7.42936 7.57678 7.58970 7.78938 8.48157 8.59584 8.99449 9.60008 11.09556 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033177 B = 0.003978 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.757972 B = 7036.744728 C = 7506.925270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 H 0.084 0.916 4 C 0.117 3.883 5 N -0.627 5.627 6 C 0.514 3.486 7 O -0.538 6.538 8 C -0.121 4.121 9 C 0.001 3.999 10 C -0.525 4.525 11 H 0.073 0.927 12 C 0.070 3.930 13 N -0.904 5.904 14 Si 0.877 3.123 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.261 1.261 18 C 0.110 3.890 19 C -0.128 4.128 20 C -0.074 4.074 21 H 0.111 0.889 22 C 0.483 3.517 23 O -0.508 6.508 24 O -0.516 6.516 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.019 0.981 33 H 0.024 0.976 34 H 0.263 0.737 35 H 0.072 0.928 36 H 0.101 0.899 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 -4.931 15.595 24.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.109 4.109 3 H 0.102 0.898 4 C -0.006 4.006 5 N -0.362 5.362 6 C 0.304 3.696 7 O -0.414 6.414 8 C -0.161 4.161 9 C -0.037 4.037 10 C -0.563 4.563 11 H 0.091 0.909 12 C -0.132 4.132 13 N -0.543 5.543 14 Si 0.704 3.296 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.185 1.185 18 C -0.014 4.014 19 C -0.167 4.167 20 C -0.093 4.093 21 H 0.129 0.871 22 C 0.326 3.674 23 O -0.396 6.396 24 O -0.328 6.328 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -18.279 -4.569 14.562 23.812 hybrid contribution -0.544 0.704 -0.111 0.896 sum -18.822 -3.865 14.450 24.042 Atomic orbital electron populations 1.22066 0.93791 1.01949 1.03994 1.21415 0.96746 1.00419 0.92326 0.89775 1.21579 0.80371 1.00412 0.98243 1.48316 1.06183 1.62579 1.19141 1.21578 0.90730 0.75864 0.81415 1.90645 1.75844 1.43916 1.30971 1.21697 0.87979 1.03176 1.03251 1.19383 0.95830 0.96399 0.92085 1.21103 0.89035 1.40946 1.05183 0.90934 1.24962 0.94652 0.95231 0.98336 1.69910 1.03611 1.47531 1.33199 0.86804 0.80007 0.80109 0.82692 1.20244 1.21438 1.18528 1.21817 0.99838 0.96558 0.83160 1.22048 0.91946 1.03016 0.99643 1.21149 0.97679 1.01177 0.89341 0.87144 1.23556 0.77087 0.82073 0.84697 1.90664 1.35393 1.26597 1.86978 1.84547 1.71531 1.59795 1.16926 0.92974 0.89919 0.92106 0.88436 0.91666 0.89546 0.89614 0.96302 0.95813 0.92717 0.91005 0.88099 0.90529 0.89136 0.73257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.86 37.16 0.33 -1.18 16 2 C -0.09 -0.92 2.06 -90.51 -0.19 -1.11 16 3 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 4 C 0.12 1.37 5.71 -3.71 -0.02 1.35 16 5 N -0.63 -8.40 2.97 -172.50 -0.51 -8.91 16 6 C 0.51 9.33 7.70 -10.99 -0.08 9.25 16 7 O -0.54 -11.90 15.39 5.56 0.09 -11.82 16 8 C -0.12 -2.31 3.98 -27.89 -0.11 -2.43 16 9 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 10 C -0.52 -14.91 9.66 -34.44 -0.33 -15.24 16 11 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 12 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 13 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 14 Si 0.88 22.60 27.47 -169.99 -4.67 17.93 16 15 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 17 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 18 C 0.11 1.06 6.37 -3.48 -0.02 1.04 16 19 C -0.13 -1.07 5.31 -26.39 -0.14 -1.21 16 20 C -0.07 -0.63 2.14 -91.74 -0.20 -0.82 16 21 H 0.11 0.74 8.14 -51.92 -0.42 0.32 16 22 C 0.48 4.39 7.33 36.01 0.26 4.65 16 23 O -0.51 -6.06 14.34 -18.75 -0.27 -6.33 16 24 O -0.52 -3.42 13.30 -39.25 -0.52 -3.95 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.88 5.41 -51.93 -0.28 0.60 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.10 1.35 7.01 -51.93 -0.36 0.99 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.51 7.93 -51.93 -0.41 1.09 16 31 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 32 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 33 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.00 5.93 -51.93 -0.31 0.69 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.60 8.08 -51.93 -0.42 0.18 16 39 H 0.41 1.12 9.10 45.56 0.41 1.54 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -35.69 315.24 -6.13 -41.82 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: -5.08 Total: -2.55 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: -0.69 Total: -3.81 kcal Atomic # 7 Polarization: -36.31 SS G_CDS: 0.26 Total: -36.05 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.71 Total: -22.09 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.67 Total: 17.93 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -35.69 -6.13 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589371583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.747 kcal (2) G-P(sol) polarization free energy of solvation -35.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds