Wall clock time and date at job start Mon Mar 30 2020 01:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.49456 * 2 1 4 4 C 1.53190 * 109.49553 * 239.94413 * 2 1 3 5 5 N 1.46923 * 108.77653 * 185.40982 * 4 2 1 6 6 C 1.34779 * 120.63485 * 233.58413 * 5 4 2 7 7 O 1.21279 * 119.99574 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00208 * 180.02562 * 6 5 4 9 9 C 1.52997 * 109.47055 * 179.97438 * 8 6 5 10 10 C 1.50706 * 109.47238 * 179.97438 * 9 8 6 11 11 H 1.07999 * 119.99515 * 0.02562 * 10 9 8 12 12 C 1.37870 * 120.00176 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00200 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47145 * 89.99836 * 14 12 10 16 16 H 1.48496 * 109.47547 * 210.00333 * 14 12 10 17 17 H 1.48499 * 109.47030 * 330.00237 * 14 12 10 18 18 C 1.46935 * 118.73804 * 53.86108 * 5 4 2 19 19 C 1.53626 * 108.54016 * 306.09466 * 18 5 4 20 20 C 1.53030 * 109.50220 * 120.10349 * 2 1 3 21 21 H 1.09008 * 109.46176 * 61.29470 * 20 2 1 22 22 C 1.50700 * 109.46047 * 301.32513 * 20 2 1 23 23 O 1.20823 * 120.00135 * 359.97438 * 22 20 2 24 24 O 1.34229 * 120.00064 * 180.02562 * 22 20 2 25 25 H 1.08995 * 109.47237 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47044 * 300.05847 * 1 2 3 27 27 H 1.09003 * 109.47580 * 60.05613 * 1 2 3 28 28 H 1.09002 * 109.58856 * 65.62269 * 4 2 1 29 29 H 1.09000 * 109.58640 * 305.19648 * 4 2 1 30 30 H 1.09001 * 109.47328 * 60.00147 * 8 6 5 31 31 H 1.09004 * 109.47043 * 299.99957 * 8 6 5 32 32 H 1.09001 * 109.46832 * 59.99966 * 9 8 6 33 33 H 1.09000 * 109.47611 * 300.00263 * 9 8 6 34 34 H 0.96999 * 120.00061 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.58473 * 65.92488 * 18 5 4 36 36 H 1.08998 * 109.58702 * 186.35190 * 18 5 4 37 37 H 1.09006 * 109.63397 * 294.86609 * 19 18 5 38 38 H 1.08997 * 109.43048 * 174.72256 * 19 18 5 39 39 H 0.96705 * 117.00324 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2499 5 7 3.5045 -0.8286 -1.1700 6 6 4.2810 -0.3855 -2.1786 7 8 3.7729 0.1054 -3.1644 8 6 5.7804 -0.5011 -2.0820 9 6 6.4188 0.0707 -3.3494 10 6 7.9183 -0.0443 -3.2525 11 1 8.3706 -0.4819 -2.3749 12 6 8.7126 0.4091 -4.2842 13 7 10.0211 0.3083 -4.1999 14 14 7.9301 1.1653 -5.8025 15 1 7.7803 2.6295 -5.6051 16 1 8.7936 0.9108 -6.9835 17 1 6.5940 0.5568 -6.0260 18 6 4.1051 -1.4318 0.0276 19 6 3.5709 -0.6955 1.2656 20 6 2.0409 -0.7235 1.2479 21 1 1.6968 -1.7578 1.2345 22 6 1.5121 -0.0345 2.4795 23 8 0.8003 0.9357 2.3704 24 8 1.8328 -0.4980 3.6977 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5148 0.8895 27 1 -0.3634 0.5130 -0.8905 28 1 1.7636 -0.1570 -2.1390 29 1 1.6052 -1.7210 -1.2987 30 1 6.0580 -1.5499 -1.9772 31 1 6.1326 0.0564 -1.2140 32 1 6.1412 1.1195 -3.4546 33 1 6.0665 -0.4870 -4.2171 34 1 10.5799 0.6269 -4.9259 35 1 3.8339 -2.4862 0.0808 36 1 5.1896 -1.3332 -0.0183 37 1 3.9159 0.3385 1.2541 38 1 3.9335 -1.1905 2.1664 39 1 1.4694 -0.0232 4.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589371583.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:33 Heat of formation + Delta-G solvation = -167.864080 kcal Electronic energy + Delta-G solvation = -21003.645963 eV Core-core repulsion = 17716.518578 eV Total energy + Delta-G solvation = -3287.127385 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.87956 -40.84153 -38.56272 -37.11968 -35.59292 -34.80239 -33.32806 -32.94530 -28.82731 -28.12454 -26.59307 -23.73319 -23.32374 -22.79218 -21.00498 -19.94516 -19.12736 -18.97320 -18.04601 -17.48958 -16.93963 -16.70883 -16.40428 -16.22456 -15.49213 -15.00822 -14.86259 -14.78570 -14.49051 -14.30637 -13.86730 -13.60833 -13.35362 -13.12095 -12.95628 -12.89522 -12.86646 -12.39065 -12.04766 -11.99033 -11.95336 -11.84646 -11.76356 -11.52896 -11.37390 -11.24319 -10.77577 -10.66507 -9.65416 -8.31043 -6.33457 1.20531 1.32873 1.35094 1.50002 1.65084 2.01213 2.14944 2.35224 3.04887 3.42452 3.63244 3.77042 3.90225 3.95901 4.25811 4.31724 4.37914 4.40668 4.47402 4.55844 4.64687 4.68115 4.69094 4.83151 4.89057 5.00856 5.10822 5.14109 5.26461 5.28449 5.34233 5.44437 5.61231 5.61234 5.73820 6.23882 6.38310 6.72794 7.02979 7.22751 7.32109 8.84491 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033177 B = 0.003978 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.757972 B = 7036.744728 C = 7506.925270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.054 0.946 4 C 0.117 3.883 5 N -0.615 5.615 6 C 0.513 3.487 7 O -0.589 6.589 8 C -0.114 4.114 9 C 0.004 3.996 10 C -0.527 4.527 11 H 0.053 0.947 12 C 0.016 3.984 13 N -0.943 5.943 14 Si 0.935 3.065 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.101 3.899 19 C -0.121 4.121 20 C -0.072 4.072 21 H 0.141 0.859 22 C 0.489 3.511 23 O -0.543 6.543 24 O -0.508 6.508 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.004 0.996 33 H 0.009 0.991 34 H 0.267 0.733 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.118 0.882 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.455 -6.384 17.059 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.103 4.103 3 H 0.072 0.928 4 C -0.006 4.006 5 N -0.348 5.348 6 C 0.303 3.697 7 O -0.469 6.469 8 C -0.153 4.153 9 C -0.034 4.034 10 C -0.565 4.565 11 H 0.072 0.928 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.760 3.240 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.187 1.187 18 C -0.020 4.020 19 C -0.159 4.159 20 C -0.091 4.091 21 H 0.158 0.842 22 C 0.333 3.667 23 O -0.434 6.434 24 O -0.322 6.322 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.119 0.881 32 H 0.023 0.977 33 H 0.028 0.972 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.136 0.864 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -19.586 -6.051 16.106 26.070 hybrid contribution -0.141 1.107 -0.414 1.190 sum -19.727 -4.943 15.693 25.688 Atomic orbital electron populations 1.22005 0.92984 1.03130 1.03155 1.21273 0.97322 0.98864 0.92818 0.92755 1.21696 0.79201 1.01793 0.97872 1.48299 1.06799 1.60836 1.18904 1.21290 0.90523 0.75985 0.81916 1.90626 1.76428 1.46583 1.33249 1.21512 0.88875 1.04153 1.00789 1.19233 0.93836 0.95715 0.94572 1.21420 0.90950 1.39815 1.04291 0.92830 1.25754 0.95095 0.95991 1.01360 1.70013 1.04875 1.48992 1.34434 0.85882 0.79047 0.79449 0.79653 1.19592 1.20269 1.18695 1.22177 0.99819 0.98244 0.81795 1.22004 0.91794 1.02128 0.99997 1.21147 0.97585 1.02284 0.88096 0.84158 1.23573 0.76304 0.81351 0.85476 1.90670 1.37101 1.28119 1.87524 1.84494 1.71156 1.59666 1.16844 0.90734 0.90991 0.92730 0.91152 0.88647 0.87597 0.88094 0.97727 0.97244 0.92389 0.87668 0.88180 0.92345 0.86416 0.71181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 8.86 71.98 0.64 -2.04 16 2 C -0.08 -1.59 2.06 -10.72 -0.02 -1.61 16 3 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 4 C 0.12 2.54 5.71 86.36 0.49 3.03 16 5 N -0.62 -15.36 2.97 -818.05 -2.43 -17.78 16 6 C 0.51 18.33 7.70 87.66 0.67 19.01 16 7 O -0.59 -26.44 15.39 -3.03 -0.05 -26.48 16 8 C -0.11 -4.25 3.98 29.85 0.12 -4.13 16 9 C 0.00 0.22 3.33 29.85 0.10 0.32 16 10 C -0.53 -30.21 9.66 25.60 0.25 -29.96 16 11 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 12 C 0.02 0.94 5.47 84.65 0.46 1.40 16 13 N -0.94 -58.80 13.96 21.44 0.30 -58.50 16 14 Si 0.93 47.00 27.47 68.60 1.88 48.88 16 15 H -0.27 -13.25 7.11 99.48 0.71 -12.54 16 16 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 17 H -0.26 -13.18 6.54 99.48 0.65 -12.53 16 18 C 0.10 1.62 6.37 86.51 0.55 2.17 16 19 C -0.12 -1.63 5.31 30.82 0.16 -1.47 16 20 C -0.07 -0.99 2.14 -11.52 -0.02 -1.02 16 21 H 0.14 1.16 8.14 -2.38 -0.02 1.14 16 22 C 0.49 7.67 7.33 71.24 0.52 8.19 16 23 O -0.54 -12.33 14.34 21.97 0.31 -12.01 16 24 O -0.51 -5.05 13.30 -51.40 -0.68 -5.74 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.46 5.41 -2.38 -0.01 1.44 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.96 7.01 -2.39 -0.02 1.94 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.11 3.51 7.93 -2.39 -0.02 3.49 16 31 H 0.10 3.43 7.70 -2.38 -0.02 3.41 16 32 H 0.00 0.23 7.53 -2.39 -0.02 0.21 16 33 H 0.01 0.48 7.16 -2.39 -0.02 0.47 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.10 1.67 5.93 -2.39 -0.01 1.65 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.12 1.03 8.08 -2.39 -0.02 1.01 16 39 H 0.43 1.09 9.10 -74.05 -0.67 0.42 16 Total: -1.00 -78.99 315.24 3.59 -75.40 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 0.33 Total: 2.34 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 3.92 Total: -6.11 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -2.13 Total: -76.28 kcal Atomic # 8 Polarization: -43.82 SS G_CDS: -0.42 Total: -44.23 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.88 Total: 48.88 kcal Total: -78.99 3.59 -75.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589371583.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.463 kcal (2) G-P(sol) polarization free energy of solvation -78.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds