Wall clock time and date at job start Mon Mar 30 2020 01:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49567 * 2 1 4 4 C 1.53194 * 109.52543 * 120.07811 * 2 1 3 5 5 N 1.46924 * 108.77334 * 65.33411 * 4 2 1 6 6 C 1.34787 * 120.63033 * 233.88527 * 5 4 2 7 7 O 1.21282 * 119.99956 * 359.72115 * 6 5 4 8 8 C 1.50697 * 119.99793 * 179.72182 * 6 5 4 9 9 C 1.53003 * 109.47058 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47386 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99711 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00053 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00194 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99830 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47141 * 60.00000 * 14 12 10 16 16 H 1.48505 * 109.46957 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47207 * 299.99483 * 14 12 10 18 18 C 1.46926 * 118.73991 * 53.61035 * 5 4 2 19 19 C 1.53185 * 108.77524 * 306.39104 * 18 5 4 20 20 C 1.53038 * 109.50283 * 239.93442 * 2 1 3 21 21 H 1.08994 * 109.46487 * 181.36233 * 20 2 1 22 22 C 1.50693 * 109.45905 * 61.39951 * 20 2 1 23 23 O 1.20830 * 120.00466 * 359.93568 * 22 20 2 24 24 O 1.34230 * 120.00300 * 179.97438 * 22 20 2 25 25 H 1.08999 * 109.46592 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47459 * 300.06748 * 1 2 3 27 27 H 1.09001 * 109.46582 * 60.06962 * 1 2 3 28 28 H 1.09004 * 109.58535 * 305.54752 * 4 2 1 29 29 H 1.08994 * 109.59149 * 185.12229 * 4 2 1 30 30 H 1.08997 * 109.47228 * 299.99525 * 8 6 5 31 31 H 1.08997 * 109.47248 * 60.00068 * 8 6 5 32 32 H 1.09003 * 109.46906 * 300.00171 * 9 8 6 33 33 H 1.09002 * 109.47351 * 59.99533 * 9 8 6 34 34 H 0.96993 * 120.00266 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.58178 * 66.18066 * 18 5 4 36 36 H 1.09004 * 109.58598 * 186.60071 * 18 5 4 37 37 H 1.08998 * 109.50031 * 174.58725 * 19 18 5 38 38 H 1.09001 * 109.49686 * 294.68431 * 19 18 5 39 39 H 0.96698 * 117.00470 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0420 -0.7236 1.2494 5 7 1.6529 -2.1381 1.1694 6 6 0.9714 -2.7209 2.1757 7 8 0.6780 -2.0781 3.1615 8 6 0.5740 -4.1711 2.0759 9 6 -0.1836 -4.5805 3.3406 10 6 -0.5816 -6.0305 3.2406 11 1 -0.3206 -6.6027 2.3627 12 6 -1.2788 -6.6266 4.2700 13 7 -1.5961 -5.9299 5.3393 14 14 -1.7727 -8.4238 4.1457 15 1 -0.5558 -9.2629 4.0035 16 1 -2.5069 -8.8214 5.3738 17 1 -2.6477 -8.6159 2.9613 18 6 2.0154 -2.9038 -0.0311 19 6 1.5038 -2.1557 -1.2661 20 6 2.0409 -0.7227 -1.2485 21 1 3.1306 -0.7436 -1.2357 22 6 1.5674 0.0061 -2.4795 23 8 0.8899 1.0005 -2.3698 24 8 1.8975 -0.4498 -3.6981 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5149 0.8893 27 1 -0.3632 0.5128 -0.8906 28 1 1.6014 -0.2732 2.1389 29 1 3.1281 -0.6456 1.2976 30 1 -0.0679 -4.3130 1.2065 31 1 1.4677 -4.7864 1.9721 32 1 0.4578 -4.4385 4.2104 33 1 -1.0773 -3.9651 3.4440 34 1 -2.0869 -6.3491 6.0633 35 1 3.0994 -3.0035 -0.0872 36 1 1.5573 -3.8919 0.0135 37 1 1.8488 -2.6625 -2.1673 38 1 0.4140 -2.1359 -1.2539 39 1 1.5702 0.0509 -4.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589371585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:37 Heat of formation + Delta-G solvation = -142.633225 kcal Electronic energy + Delta-G solvation = -21170.833859 eV Core-core repulsion = 17884.800566 eV Total energy + Delta-G solvation = -3286.033293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.10753 -39.66045 -37.47698 -36.36587 -33.64282 -33.33975 -31.99001 -30.82969 -27.57258 -26.83955 -25.09682 -23.16936 -22.48189 -21.49660 -19.47092 -18.44351 -18.31069 -17.28258 -16.66796 -16.01647 -15.73874 -15.39982 -15.31259 -14.65901 -14.40400 -14.14864 -13.73576 -13.43041 -13.13203 -12.95178 -12.29936 -12.17659 -12.02684 -11.90917 -11.76620 -11.62123 -11.21231 -11.09439 -10.91218 -10.79153 -10.71823 -10.59257 -10.41552 -9.95585 -9.60727 -9.17927 -8.98959 -8.45137 -8.30675 -5.95462 -4.00109 1.92274 2.72842 3.19887 3.28059 3.34557 3.39564 3.41146 4.26205 4.39770 4.47335 4.66606 4.82472 5.03985 5.06003 5.10292 5.36374 5.38926 5.39373 5.46359 5.52813 5.65011 5.71275 5.85139 5.91671 6.03573 6.06130 6.19566 6.20168 6.23093 6.43883 6.71550 6.89980 7.62149 7.72728 7.74602 7.86623 8.07678 8.38691 8.74039 9.08209 9.63407 11.15464 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032860 B = 0.003909 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.889298 B = 7161.969997 C = 7548.448126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 H 0.086 0.914 4 C 0.116 3.884 5 N -0.625 5.625 6 C 0.514 3.486 7 O -0.531 6.531 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.528 4.528 11 H 0.055 0.945 12 C 0.059 3.941 13 N -0.890 5.890 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C 0.111 3.889 19 C -0.131 4.131 20 C -0.074 4.074 21 H 0.110 0.890 22 C 0.483 3.517 23 O -0.509 6.509 24 O -0.517 6.517 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.261 0.739 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.856 10.220 -17.905 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.108 4.108 3 H 0.105 0.895 4 C -0.007 4.007 5 N -0.361 5.361 6 C 0.304 3.696 7 O -0.406 6.406 8 C -0.169 4.169 9 C 0.000 4.000 10 C -0.566 4.566 11 H 0.073 0.927 12 C -0.143 4.143 13 N -0.528 5.528 14 Si 0.720 3.280 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.012 4.012 19 C -0.169 4.169 20 C -0.093 4.093 21 H 0.128 0.872 22 C 0.325 3.675 23 O -0.396 6.396 24 O -0.329 6.329 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 9.548 10.595 -16.781 22.023 hybrid contribution -0.444 -0.584 -0.704 1.017 sum 9.104 10.011 -17.485 22.109 Atomic orbital electron populations 1.22031 0.93837 1.02458 1.03030 1.21396 0.97893 0.99198 0.92334 0.89533 1.21549 0.99066 0.81837 0.98268 1.48297 1.58127 1.10690 1.19033 1.21577 0.75723 0.90846 0.81431 1.90662 1.53600 1.65583 1.30777 1.21886 1.01635 0.89292 1.04064 1.18900 0.95325 0.95573 0.90241 1.21176 1.36162 0.95913 1.03368 0.92680 1.25018 0.95974 0.97938 0.95385 1.69983 1.39422 1.36294 1.07113 0.86660 0.78655 0.85292 0.77359 1.20247 1.21293 1.20259 1.21675 1.00271 0.95975 0.83301 1.22019 1.02529 0.92761 0.99584 1.21109 1.02596 0.96233 0.89364 0.87229 1.23580 0.76564 0.82674 0.84671 1.90688 1.35895 1.25993 1.87054 1.84546 1.72970 1.58420 1.16943 0.92389 0.92321 0.90953 0.88368 0.91817 0.90310 0.90246 0.95839 0.95867 0.92887 0.91227 0.88313 0.89387 0.90219 0.73328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.40 37.16 0.31 -1.68 16 2 C -0.09 -0.95 2.36 -90.50 -0.21 -1.16 16 3 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 4 C 0.12 1.41 5.83 -3.71 -0.02 1.39 16 5 N -0.63 -8.69 2.41 -172.77 -0.42 -9.10 16 6 C 0.51 9.79 7.70 -10.98 -0.08 9.70 16 7 O -0.53 -12.43 15.39 5.56 0.09 -12.34 16 8 C -0.13 -2.57 3.98 -27.88 -0.11 -2.69 16 9 C 0.04 0.99 4.26 -27.89 -0.12 0.88 16 10 C -0.53 -14.87 9.11 -34.44 -0.31 -15.18 16 11 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.41 13.29 55.43 0.74 -26.67 16 14 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 C 0.11 1.12 6.34 -3.71 -0.02 1.10 16 19 C -0.13 -1.14 4.96 -26.61 -0.13 -1.27 16 20 C -0.07 -0.64 2.37 -91.73 -0.22 -0.86 16 21 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 22 C 0.48 4.53 7.34 36.00 0.26 4.80 16 23 O -0.51 -6.26 14.51 -18.75 -0.27 -6.53 16 24 O -0.52 -3.56 13.30 -39.26 -0.52 -4.08 16 25 H 0.06 0.80 5.97 -51.93 -0.31 0.49 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.95 5.64 -51.93 -0.29 0.65 16 28 H 0.10 1.43 7.00 -51.93 -0.36 1.06 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 31 H 0.08 1.44 7.94 -51.93 -0.41 1.02 16 32 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.01 5.93 -51.93 -0.31 0.71 16 37 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.08 0.81 6.34 -51.93 -0.33 0.48 16 39 H 0.41 1.23 9.10 45.56 0.41 1.64 16 LS Contribution 314.46 15.07 4.74 4.74 Total: -1.00 -35.62 314.46 -6.34 -41.96 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.91 Total: -1.12 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -0.76 Total: -3.37 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.32 Total: -35.78 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.71 Total: -22.96 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -35.62 -6.34 -41.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589371585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.676 kcal (2) G-P(sol) polarization free energy of solvation -35.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds