Wall clock time and date at job start Mon Mar 30 2020 01:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49567 * 2 1 4 4 C 1.53194 * 109.52543 * 120.07811 * 2 1 3 5 5 N 1.46924 * 108.77334 * 65.33411 * 4 2 1 6 6 C 1.34787 * 120.63033 * 233.88527 * 5 4 2 7 7 O 1.21282 * 119.99956 * 359.72115 * 6 5 4 8 8 C 1.50697 * 119.99793 * 179.72182 * 6 5 4 9 9 C 1.53003 * 109.47058 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47386 * 179.97438 * 9 8 6 11 11 H 1.08002 * 119.99711 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00053 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00194 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99830 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47141 * 60.00000 * 14 12 10 16 16 H 1.48505 * 109.46957 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47207 * 299.99483 * 14 12 10 18 18 C 1.46926 * 118.73991 * 53.61035 * 5 4 2 19 19 C 1.53185 * 108.77524 * 306.39104 * 18 5 4 20 20 C 1.53038 * 109.50283 * 239.93442 * 2 1 3 21 21 H 1.08994 * 109.46487 * 181.36233 * 20 2 1 22 22 C 1.50693 * 109.45905 * 61.39951 * 20 2 1 23 23 O 1.20830 * 120.00466 * 359.93568 * 22 20 2 24 24 O 1.34230 * 120.00300 * 179.97438 * 22 20 2 25 25 H 1.08999 * 109.46592 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47459 * 300.06748 * 1 2 3 27 27 H 1.09001 * 109.46582 * 60.06962 * 1 2 3 28 28 H 1.09004 * 109.58535 * 305.54752 * 4 2 1 29 29 H 1.08994 * 109.59149 * 185.12229 * 4 2 1 30 30 H 1.08997 * 109.47228 * 299.99525 * 8 6 5 31 31 H 1.08997 * 109.47248 * 60.00068 * 8 6 5 32 32 H 1.09003 * 109.46906 * 300.00171 * 9 8 6 33 33 H 1.09002 * 109.47351 * 59.99533 * 9 8 6 34 34 H 0.96993 * 120.00266 * 179.97438 * 13 12 10 35 35 H 1.09001 * 109.58178 * 66.18066 * 18 5 4 36 36 H 1.09004 * 109.58598 * 186.60071 * 18 5 4 37 37 H 1.08998 * 109.50031 * 174.58725 * 19 18 5 38 38 H 1.09001 * 109.49686 * 294.68431 * 19 18 5 39 39 H 0.96698 * 117.00470 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0420 -0.7236 1.2494 5 7 1.6529 -2.1381 1.1694 6 6 0.9714 -2.7209 2.1757 7 8 0.6780 -2.0781 3.1615 8 6 0.5740 -4.1711 2.0759 9 6 -0.1836 -4.5805 3.3406 10 6 -0.5816 -6.0305 3.2406 11 1 -0.3206 -6.6027 2.3627 12 6 -1.2788 -6.6266 4.2700 13 7 -1.5961 -5.9299 5.3393 14 14 -1.7727 -8.4238 4.1457 15 1 -0.5558 -9.2629 4.0035 16 1 -2.5069 -8.8214 5.3738 17 1 -2.6477 -8.6159 2.9613 18 6 2.0154 -2.9038 -0.0311 19 6 1.5038 -2.1557 -1.2661 20 6 2.0409 -0.7227 -1.2485 21 1 3.1306 -0.7436 -1.2357 22 6 1.5674 0.0061 -2.4795 23 8 0.8899 1.0005 -2.3698 24 8 1.8975 -0.4498 -3.6981 25 1 -0.3632 -1.0277 0.0005 26 1 -0.3634 0.5149 0.8893 27 1 -0.3632 0.5128 -0.8906 28 1 1.6014 -0.2732 2.1389 29 1 3.1281 -0.6456 1.2976 30 1 -0.0679 -4.3130 1.2065 31 1 1.4677 -4.7864 1.9721 32 1 0.4578 -4.4385 4.2104 33 1 -1.0773 -3.9651 3.4440 34 1 -2.0869 -6.3491 6.0633 35 1 3.0994 -3.0035 -0.0872 36 1 1.5573 -3.8919 0.0135 37 1 1.8488 -2.6625 -2.1673 38 1 0.4140 -2.1359 -1.2539 39 1 1.5702 0.0509 -4.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589371585.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:37 Heat of formation + Delta-G solvation = -167.800591 kcal Electronic energy + Delta-G solvation = -21171.925198 eV Core-core repulsion = 17884.800566 eV Total energy + Delta-G solvation = -3287.124632 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94793 -40.80166 -38.62144 -37.07543 -35.59111 -34.61664 -33.10636 -32.53680 -28.61368 -28.25342 -26.67941 -24.07869 -23.72252 -22.85812 -20.69036 -19.46037 -19.00427 -18.85768 -17.89141 -17.28272 -16.79935 -16.67391 -16.48454 -16.35782 -15.68125 -15.23197 -14.67078 -14.48455 -14.42070 -14.15953 -13.94045 -13.67703 -13.24200 -12.94715 -12.82938 -12.76126 -12.73634 -12.50087 -12.39121 -12.05265 -11.89752 -11.67172 -11.59298 -11.47719 -11.30257 -11.26054 -10.60243 -10.54524 -9.59177 -8.16223 -6.30568 1.23163 1.43341 1.47981 1.55597 1.72151 2.05191 2.18588 2.44934 3.16786 3.45181 3.63494 3.84815 3.94942 4.00614 4.19931 4.35179 4.41391 4.49642 4.53714 4.57355 4.71149 4.72444 4.73349 4.84208 4.89239 5.05186 5.07566 5.14716 5.18434 5.34996 5.50055 5.64249 5.66744 5.72139 5.86827 6.18961 6.43876 6.88158 7.04768 7.31196 7.40026 8.96383 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032860 B = 0.003909 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.889298 B = 7161.969997 C = 7548.448126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.096 0.904 4 C 0.114 3.886 5 N -0.611 5.611 6 C 0.511 3.489 7 O -0.591 6.591 8 C -0.116 4.116 9 C 0.043 3.957 10 C -0.543 4.543 11 H 0.078 0.922 12 C -0.007 4.007 13 N -0.939 5.939 14 Si 0.974 3.026 15 H -0.260 1.260 16 H -0.289 1.289 17 H -0.262 1.262 18 C 0.102 3.898 19 C -0.124 4.124 20 C -0.071 4.071 21 H 0.143 0.857 22 C 0.489 3.511 23 O -0.545 6.545 24 O -0.508 6.508 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.106 0.894 32 H -0.019 1.019 33 H -0.022 1.022 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.060 0.940 39 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.813 8.657 -21.129 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 H 0.114 0.886 4 C -0.008 4.008 5 N -0.345 5.345 6 C 0.301 3.699 7 O -0.471 6.471 8 C -0.155 4.155 9 C 0.005 3.995 10 C -0.580 4.580 11 H 0.096 0.904 12 C -0.204 4.204 13 N -0.579 5.579 14 Si 0.798 3.202 15 H -0.185 1.185 16 H -0.215 1.215 17 H -0.187 1.187 18 C -0.019 4.019 19 C -0.162 4.162 20 C -0.090 4.090 21 H 0.161 0.839 22 C 0.333 3.667 23 O -0.436 6.436 24 O -0.321 6.321 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.124 0.876 32 H -0.001 1.001 33 H -0.004 1.004 34 H 0.071 0.929 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 11.551 9.029 -20.110 24.887 hybrid contribution -1.023 -0.027 0.217 1.046 sum 10.527 9.002 -19.893 24.240 Atomic orbital electron populations 1.21976 0.95934 1.01161 1.01906 1.21297 0.95985 0.99944 0.92877 0.88570 1.21681 1.00749 0.80540 0.97846 1.48245 1.55860 1.11613 1.18782 1.21366 0.76169 0.90454 0.81919 1.90643 1.56391 1.66583 1.33507 1.21635 1.02230 0.90655 1.01030 1.18686 0.93527 0.95046 0.92241 1.21691 1.35760 0.96513 1.04066 0.90403 1.26148 0.95888 1.03588 0.94825 1.70177 1.40573 1.38890 1.08277 0.85375 0.78828 0.78476 0.77571 1.18498 1.21515 1.18685 1.22073 1.02522 0.95602 0.81750 1.21978 1.01438 0.92791 0.99966 1.21102 1.04392 0.95570 0.87926 0.83926 1.23579 0.75664 0.81958 0.85465 1.90692 1.37572 1.27691 1.87608 1.84490 1.72499 1.58331 1.16830 0.93749 0.94310 0.91155 0.91559 0.88467 0.88099 0.87554 1.00058 1.00380 0.92913 0.87690 0.88173 0.86379 0.92081 0.71221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.40 71.98 0.60 -3.36 16 2 C -0.08 -1.62 2.36 -10.72 -0.03 -1.64 16 3 H 0.10 1.77 8.07 -2.38 -0.02 1.75 16 4 C 0.11 2.65 5.83 86.36 0.50 3.16 16 5 N -0.61 -16.15 2.41 -818.90 -1.98 -18.12 16 6 C 0.51 19.83 7.70 87.65 0.67 20.50 16 7 O -0.59 -29.47 15.39 -3.04 -0.05 -29.52 16 8 C -0.12 -4.61 3.98 29.85 0.12 -4.49 16 9 C 0.04 2.39 4.26 29.85 0.13 2.52 16 10 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 11 H 0.08 3.96 7.74 -2.91 -0.02 3.94 16 12 C -0.01 -0.42 5.46 84.66 0.46 0.05 16 13 N -0.94 -60.03 13.29 21.45 0.28 -59.74 16 14 Si 0.97 44.10 29.54 68.60 2.03 46.13 16 15 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 16 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.10 1.67 6.34 86.36 0.55 2.22 16 19 C -0.12 -1.69 4.96 30.67 0.15 -1.54 16 20 C -0.07 -0.98 2.37 -11.51 -0.03 -1.01 16 21 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 22 C 0.49 7.73 7.34 71.23 0.52 8.26 16 23 O -0.55 -12.55 14.51 21.95 0.32 -12.23 16 24 O -0.51 -5.05 13.30 -51.42 -0.68 -5.73 16 25 H 0.04 1.25 5.97 -2.39 -0.01 1.23 16 26 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.07 1.86 5.64 -2.39 -0.01 1.85 16 28 H 0.07 2.01 7.00 -2.38 -0.02 1.99 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.10 3.54 7.70 -2.39 -0.02 3.52 16 31 H 0.11 3.64 7.94 -2.39 -0.02 3.62 16 32 H -0.02 -1.21 8.10 -2.39 -0.02 -1.23 16 33 H -0.02 -1.43 8.10 -2.39 -0.02 -1.45 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.10 1.67 5.93 -2.38 -0.01 1.66 16 37 H 0.12 1.00 8.08 -2.39 -0.02 0.98 16 38 H 0.06 1.10 6.34 -2.39 -0.02 1.08 16 39 H 0.43 1.12 9.10 -74.06 -0.67 0.44 16 Total: -1.00 -83.17 314.46 4.21 -78.97 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 0.39 Total: 6.13 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 3.89 Total: -5.88 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -1.69 Total: -77.86 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -0.41 Total: -47.48 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -83.17 4.21 -78.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589371585.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.832 kcal (2) G-P(sol) polarization free energy of solvation -83.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds