Wall clock time and date at job start Mon Mar 30 2020 01:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.49702 * 2 1 4 4 C 1.53186 * 109.49613 * 239.93394 * 2 1 3 5 5 N 1.46927 * 108.77992 * 294.65217 * 4 2 1 6 6 C 1.34777 * 120.62966 * 126.36554 * 5 4 2 7 7 O 1.21274 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.46973 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47348 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.46922 * 118.73621 * 306.64887 * 5 4 2 19 19 C 1.52757 * 109.01049 * 53.30631 * 18 5 4 20 20 C 1.53041 * 109.38272 * 305.58363 * 19 18 5 21 21 H 1.08994 * 109.45256 * 301.22766 * 20 19 18 22 22 C 1.50702 * 109.46106 * 181.26003 * 20 19 18 23 23 O 1.20828 * 120.00152 * 239.93775 * 22 20 19 24 24 O 1.34228 * 119.99560 * 59.93218 * 22 20 19 25 25 H 1.08994 * 109.47409 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47539 * 300.06702 * 1 2 3 27 27 H 1.08999 * 109.46970 * 60.06405 * 1 2 3 28 28 H 1.09001 * 109.58710 * 174.86578 * 4 2 1 29 29 H 1.08999 * 109.70296 * 54.51261 * 4 2 1 30 30 H 1.09000 * 109.47333 * 60.00571 * 8 6 5 31 31 H 1.09002 * 109.47152 * 300.00044 * 8 6 5 32 32 H 1.09001 * 109.47671 * 60.00215 * 9 8 6 33 33 H 1.09006 * 109.47297 * 299.99934 * 9 8 6 34 34 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 35 35 H 1.08999 * 109.58509 * 173.14441 * 18 5 4 36 36 H 1.09000 * 109.58549 * 293.55858 * 18 5 4 37 37 H 1.09003 * 109.56497 * 185.55306 * 19 18 5 38 38 H 1.09002 * 109.38877 * 65.51770 * 19 18 5 39 39 H 0.96709 * 116.99574 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 1.6522 -2.1380 -1.1698 6 6 0.9745 -2.7218 -2.1780 7 8 0.6806 -2.0789 -3.1634 8 6 0.5821 -4.1735 -2.0808 9 6 -0.1707 -4.5842 -3.3479 10 6 -0.5638 -6.0359 -3.2505 11 1 -0.3023 -6.6084 -2.3728 12 6 -1.2570 -6.6330 -4.2818 13 7 -1.5749 -5.9361 -5.3509 14 14 -1.7435 -8.4325 -4.1613 15 1 -0.6624 -9.2769 -4.7301 16 1 -1.9559 -8.7936 -2.7366 17 1 -2.9992 -8.6578 -4.9215 18 6 2.0103 -2.9023 0.0328 19 6 1.5042 -2.1559 1.2658 20 6 2.0414 -0.7230 1.2482 21 1 3.1311 -0.7441 1.2348 22 6 1.5685 0.0057 2.4796 23 8 0.8920 1.0008 2.3703 24 8 1.8987 -0.4509 3.6979 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5149 0.8894 27 1 -0.3633 0.5128 -0.8906 28 1 3.1274 -0.6455 -1.2985 29 1 1.6023 -0.2735 -2.1402 30 1 -0.0608 -4.3188 -1.2127 31 1 1.4778 -4.7858 -1.9762 32 1 0.4725 -4.4391 -4.2159 33 1 -1.0664 -3.9720 -3.4530 34 1 -1.3219 -5.0017 -5.4135 35 1 1.5490 -3.8889 -0.0104 36 1 3.0938 -3.0057 0.0908 37 1 1.8497 -2.6629 2.1667 38 1 0.4144 -2.1361 1.2547 39 1 1.5724 0.0503 4.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589371586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:39 Heat of formation + Delta-G solvation = -147.196151 kcal Electronic energy + Delta-G solvation = -21208.534699 eV Core-core repulsion = 17922.303542 eV Total energy + Delta-G solvation = -3286.231157 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.15854 -39.74149 -37.56700 -36.40724 -33.88200 -33.50898 -32.06760 -30.72545 -27.62655 -26.74507 -24.75223 -23.21582 -22.52439 -21.72086 -19.62882 -18.52730 -18.35014 -17.37427 -16.77587 -16.22548 -15.83666 -15.55679 -15.43970 -14.71691 -14.23795 -13.78017 -13.72016 -13.55405 -13.40196 -13.05182 -12.41142 -12.17924 -12.07229 -12.00324 -11.78426 -11.72012 -11.40569 -11.21775 -10.84675 -10.81519 -10.77841 -10.46507 -10.12196 -10.11803 -9.89825 -9.25686 -8.53058 -8.52581 -8.27736 -6.31529 -4.01813 1.88724 2.68940 3.09704 3.19563 3.45041 3.49050 3.64543 4.21160 4.34494 4.57122 4.61980 4.76859 4.97953 5.01055 5.04597 5.28812 5.33675 5.40967 5.46200 5.47111 5.59377 5.65419 5.78368 5.86232 5.98298 6.00310 6.06765 6.08256 6.18036 6.38985 6.62385 6.75364 7.52018 7.57051 7.58660 7.63101 8.19549 8.50006 8.62841 8.92495 9.72070 11.09510 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.003921 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.939935 B = 7139.070473 C = 7529.756025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.089 4.089 3 H 0.087 0.913 4 C 0.115 3.885 5 N -0.624 5.624 6 C 0.514 3.486 7 O -0.534 6.534 8 C -0.122 4.122 9 C 0.024 3.976 10 C -0.608 4.608 11 H 0.049 0.951 12 C 0.015 3.985 13 N -0.911 5.911 14 Si 1.072 2.928 15 H -0.288 1.288 16 H -0.289 1.289 17 H -0.284 1.284 18 C 0.111 3.889 19 C -0.131 4.131 20 C -0.074 4.074 21 H 0.110 0.890 22 C 0.483 3.517 23 O -0.508 6.508 24 O -0.517 6.517 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.014 0.986 33 H 0.014 0.986 34 H 0.272 0.728 35 H 0.098 0.902 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.064 10.269 18.517 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.108 4.108 3 H 0.106 0.894 4 C -0.007 4.007 5 N -0.360 5.360 6 C 0.304 3.696 7 O -0.410 6.410 8 C -0.162 4.162 9 C -0.014 4.014 10 C -0.647 4.647 11 H 0.068 0.932 12 C -0.189 4.189 13 N -0.547 5.547 14 Si 0.901 3.099 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.210 1.210 18 C -0.013 4.013 19 C -0.169 4.169 20 C -0.093 4.093 21 H 0.128 0.872 22 C 0.325 3.675 23 O -0.396 6.396 24 O -0.328 6.328 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.033 0.967 33 H 0.032 0.968 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 9.073 9.434 16.772 21.275 hybrid contribution 0.698 1.668 1.562 2.389 sum 9.771 11.103 18.334 23.556 Atomic orbital electron populations 1.22030 0.93842 1.02416 1.03067 1.21389 0.97883 0.99239 0.92293 0.89445 1.21560 0.99142 0.81720 0.98321 1.48265 1.58168 1.10769 1.18763 1.21553 0.75721 0.90828 0.81477 1.90650 1.53679 1.65688 1.30964 1.21741 1.01625 0.89281 1.03514 1.19029 0.94888 0.96473 0.90978 1.22049 1.40588 0.95760 1.06273 0.93248 1.25841 0.94256 1.06125 0.92696 1.70705 1.44419 1.10977 1.28614 0.83505 0.76787 0.74314 0.75309 1.21485 1.21519 1.21009 1.21596 1.00413 0.95963 0.83296 1.21942 1.02559 0.92825 0.99565 1.21106 1.02628 0.96188 0.89388 0.87184 1.23554 0.76555 0.82680 0.84680 1.90689 1.35914 1.25943 1.87062 1.84547 1.73006 1.58360 1.16936 0.92455 0.90877 0.92343 0.91751 0.88383 0.90132 0.90073 0.96749 0.96766 0.91690 0.88363 0.91166 0.89265 0.90246 0.73285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.40 37.16 0.31 -1.67 16 2 C -0.09 -0.94 2.35 -90.50 -0.21 -1.15 16 3 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 4 C 0.12 1.40 5.83 -3.71 -0.02 1.38 16 5 N -0.62 -8.65 2.42 -173.04 -0.42 -9.07 16 6 C 0.51 9.78 7.70 -10.99 -0.08 9.69 16 7 O -0.53 -12.39 15.39 5.56 0.09 -12.31 16 8 C -0.12 -2.46 3.99 -27.89 -0.11 -2.57 16 9 C 0.02 0.64 3.57 -27.88 -0.10 0.54 16 10 C -0.61 -17.40 9.11 -34.44 -0.31 -17.72 16 11 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 12 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 13 N -0.91 -28.85 13.65 55.43 0.76 -28.09 16 14 Si 1.07 25.42 29.90 -169.99 -5.08 20.34 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.11 1.12 6.31 -3.94 -0.02 1.10 16 19 C -0.13 -1.13 4.94 -26.83 -0.13 -1.27 16 20 C -0.07 -0.64 2.37 -91.73 -0.22 -0.86 16 21 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 22 C 0.48 4.49 7.34 36.01 0.26 4.76 16 23 O -0.51 -6.21 14.51 -18.75 -0.27 -6.48 16 24 O -0.52 -3.52 13.30 -39.25 -0.52 -4.04 16 25 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 26 H 0.07 0.95 5.65 -51.93 -0.29 0.66 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.10 1.41 7.00 -51.93 -0.36 1.05 16 30 H 0.08 1.50 7.68 -51.93 -0.40 1.10 16 31 H 0.08 1.50 7.95 -51.93 -0.41 1.09 16 32 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 33 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 34 H 0.27 8.76 7.22 -40.82 -0.29 8.47 16 35 H 0.10 1.02 5.93 -51.93 -0.31 0.71 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.61 8.08 -51.93 -0.42 0.19 16 38 H 0.08 0.80 6.34 -51.93 -0.33 0.48 16 39 H 0.41 1.19 9.10 45.56 0.41 1.61 16 LS Contribution 313.12 15.07 4.72 4.72 Total: -1.00 -36.26 313.12 -6.33 -42.59 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.86 Total: -0.25 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -0.74 Total: -7.42 kcal Atomic # 7 Polarization: -37.50 SS G_CDS: 0.34 Total: -37.16 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.71 Total: -22.83 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.34 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -36.26 -6.33 -42.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589371586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.605 kcal (2) G-P(sol) polarization free energy of solvation -36.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds