Wall clock time and date at job start Mon Mar 30 2020 01:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.49702 * 2 1 4 4 C 1.53186 * 109.49613 * 239.93394 * 2 1 3 5 5 N 1.46927 * 108.77992 * 294.65217 * 4 2 1 6 6 C 1.34777 * 120.62966 * 126.36554 * 5 4 2 7 7 O 1.21274 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.52998 * 109.46973 * 180.02562 * 8 6 5 10 10 C 1.50706 * 109.47348 * 180.02562 * 9 8 6 11 11 H 1.08005 * 119.99758 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00102 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47483 * 269.99808 * 14 12 10 16 16 H 1.48499 * 109.47134 * 30.00322 * 14 12 10 17 17 H 1.48507 * 109.46904 * 150.00145 * 14 12 10 18 18 C 1.46922 * 118.73621 * 306.64887 * 5 4 2 19 19 C 1.52757 * 109.01049 * 53.30631 * 18 5 4 20 20 C 1.53041 * 109.38272 * 305.58363 * 19 18 5 21 21 H 1.08994 * 109.45256 * 301.22766 * 20 19 18 22 22 C 1.50702 * 109.46106 * 181.26003 * 20 19 18 23 23 O 1.20828 * 120.00152 * 239.93775 * 22 20 19 24 24 O 1.34228 * 119.99560 * 59.93218 * 22 20 19 25 25 H 1.08994 * 109.47409 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47539 * 300.06702 * 1 2 3 27 27 H 1.08999 * 109.46970 * 60.06405 * 1 2 3 28 28 H 1.09001 * 109.58710 * 174.86578 * 4 2 1 29 29 H 1.08999 * 109.70296 * 54.51261 * 4 2 1 30 30 H 1.09000 * 109.47333 * 60.00571 * 8 6 5 31 31 H 1.09002 * 109.47152 * 300.00044 * 8 6 5 32 32 H 1.09001 * 109.47671 * 60.00215 * 9 8 6 33 33 H 1.09006 * 109.47297 * 299.99934 * 9 8 6 34 34 H 0.97001 * 119.99646 * 359.97438 * 13 12 10 35 35 H 1.08999 * 109.58509 * 173.14441 * 18 5 4 36 36 H 1.09000 * 109.58549 * 293.55858 * 18 5 4 37 37 H 1.09003 * 109.56497 * 185.55306 * 19 18 5 38 38 H 1.09002 * 109.38877 * 65.51770 * 19 18 5 39 39 H 0.96709 * 116.99574 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7235 -1.2497 5 7 1.6522 -2.1380 -1.1698 6 6 0.9745 -2.7218 -2.1780 7 8 0.6806 -2.0789 -3.1634 8 6 0.5821 -4.1735 -2.0808 9 6 -0.1707 -4.5842 -3.3479 10 6 -0.5638 -6.0359 -3.2505 11 1 -0.3023 -6.6084 -2.3728 12 6 -1.2570 -6.6330 -4.2818 13 7 -1.5749 -5.9361 -5.3509 14 14 -1.7435 -8.4325 -4.1613 15 1 -0.6624 -9.2769 -4.7301 16 1 -1.9559 -8.7936 -2.7366 17 1 -2.9992 -8.6578 -4.9215 18 6 2.0103 -2.9023 0.0328 19 6 1.5042 -2.1559 1.2658 20 6 2.0414 -0.7230 1.2482 21 1 3.1311 -0.7441 1.2348 22 6 1.5685 0.0057 2.4796 23 8 0.8920 1.0008 2.3703 24 8 1.8987 -0.4509 3.6979 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5149 0.8894 27 1 -0.3633 0.5128 -0.8906 28 1 3.1274 -0.6455 -1.2985 29 1 1.6023 -0.2735 -2.1402 30 1 -0.0608 -4.3188 -1.2127 31 1 1.4778 -4.7858 -1.9762 32 1 0.4725 -4.4391 -4.2159 33 1 -1.0664 -3.9720 -3.4530 34 1 -1.3219 -5.0017 -5.4135 35 1 1.5490 -3.8889 -0.0104 36 1 3.0938 -3.0057 0.0908 37 1 1.8497 -2.6629 2.1667 38 1 0.4144 -2.1361 1.2547 39 1 1.5724 0.0503 4.4578 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589371586.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:39 Heat of formation + Delta-G solvation = -172.861416 kcal Electronic energy + Delta-G solvation = -21209.647628 eV Core-core repulsion = 17922.303542 eV Total energy + Delta-G solvation = -3287.344086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.00379 -40.87857 -38.70740 -37.10658 -35.96594 -34.69805 -33.10257 -32.49614 -28.58194 -28.12977 -26.48351 -24.18317 -23.89856 -22.98266 -20.83364 -19.51347 -19.12912 -19.00186 -18.08472 -17.38578 -16.88279 -16.82032 -16.52897 -15.77319 -15.59728 -15.35064 -15.09336 -14.59211 -14.49787 -14.09092 -13.97621 -13.79720 -13.55096 -13.00577 -12.86996 -12.78939 -12.66883 -12.46847 -12.11037 -12.04168 -11.98596 -11.84408 -11.64160 -11.59806 -11.31184 -10.89592 -10.60513 -10.54813 -9.67078 -8.68521 -6.40460 1.20286 1.55129 1.61293 1.65974 1.82436 1.97803 2.14260 2.60775 3.18225 3.40132 3.58319 3.75551 3.89830 3.95072 4.14410 4.28074 4.31351 4.36776 4.40590 4.52083 4.65048 4.66375 4.68262 4.78542 4.83218 4.92977 5.02919 5.08884 5.11753 5.28927 5.30362 5.37414 5.59660 5.68934 5.94308 6.17529 6.35966 6.52260 7.02118 7.20292 7.46106 8.71383 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.003921 C = 0.003718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.939935 B = 7139.070473 C = 7529.756025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.097 0.903 4 C 0.114 3.886 5 N -0.609 5.609 6 C 0.511 3.489 7 O -0.592 6.592 8 C -0.110 4.110 9 C 0.027 3.973 10 C -0.617 4.617 11 H 0.069 0.931 12 C -0.046 4.046 13 N -0.942 5.942 14 Si 1.127 2.873 15 H -0.271 1.271 16 H -0.259 1.259 17 H -0.288 1.288 18 C 0.101 3.899 19 C -0.124 4.124 20 C -0.071 4.071 21 H 0.144 0.856 22 C 0.490 3.510 23 O -0.545 6.545 24 O -0.508 6.508 25 H 0.042 0.958 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.106 0.894 32 H -0.022 1.022 33 H -0.025 1.025 34 H 0.251 0.749 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.060 0.940 39 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.110 8.837 21.791 26.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 H 0.116 0.884 4 C -0.008 4.008 5 N -0.343 5.343 6 C 0.301 3.699 7 O -0.472 6.472 8 C -0.149 4.149 9 C -0.011 4.011 10 C -0.654 4.654 11 H 0.087 0.913 12 C -0.243 4.243 13 N -0.579 5.579 14 Si 0.947 3.053 15 H -0.196 1.196 16 H -0.183 1.183 17 H -0.214 1.214 18 C -0.020 4.020 19 C -0.162 4.162 20 C -0.090 4.090 21 H 0.161 0.839 22 C 0.334 3.666 23 O -0.435 6.435 24 O -0.321 6.321 25 H 0.061 0.939 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.124 0.876 32 H -0.004 1.004 33 H -0.007 1.007 34 H 0.060 0.940 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.079 0.921 39 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 11.173 8.018 20.151 24.396 hybrid contribution 0.099 2.186 0.645 2.281 sum 11.273 10.203 20.796 25.762 Atomic orbital electron populations 1.21975 0.95941 1.01099 1.01962 1.21293 0.95971 1.00006 0.92814 0.88434 1.21700 1.00847 0.80366 0.97928 1.48222 1.55863 1.11711 1.18481 1.21294 0.76243 0.90340 0.82029 1.90633 1.56394 1.66610 1.33598 1.21510 1.02137 0.90811 1.00474 1.18871 0.93453 0.95638 0.93133 1.22521 1.39679 0.96523 1.06693 0.91279 1.27676 0.93898 1.10623 0.92069 1.70871 1.46514 1.10091 1.30423 0.82845 0.76670 0.68747 0.77056 1.19601 1.18322 1.21401 1.21989 1.02666 0.95550 0.81796 1.21901 1.01457 0.92893 0.99915 1.21099 1.04433 0.95490 0.87969 0.83864 1.23551 0.75657 0.81967 0.85469 1.90693 1.37583 1.27637 1.87613 1.84492 1.72533 1.58275 1.16828 0.93855 0.91079 0.94297 0.88378 0.91509 0.88143 0.87596 1.00351 1.00672 0.93984 0.88360 0.87610 0.86259 0.92128 0.71176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 8.40 71.98 0.60 -3.32 16 2 C -0.08 -1.59 2.35 -10.72 -0.03 -1.62 16 3 H 0.10 1.76 8.07 -2.39 -0.02 1.74 16 4 C 0.11 2.61 5.83 86.36 0.50 3.11 16 5 N -0.61 -16.00 2.42 -819.78 -1.98 -17.99 16 6 C 0.51 19.74 7.70 87.66 0.67 20.41 16 7 O -0.59 -29.14 15.39 -3.01 -0.05 -29.19 16 8 C -0.11 -4.40 3.99 29.85 0.12 -4.28 16 9 C 0.03 1.49 3.57 29.85 0.11 1.59 16 10 C -0.62 -35.43 9.11 25.60 0.23 -35.19 16 11 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 12 C -0.05 -2.75 5.46 84.65 0.46 -2.29 16 13 N -0.94 -61.80 13.65 21.45 0.29 -61.51 16 14 Si 1.13 50.28 29.90 68.60 2.05 52.33 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 17 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 18 C 0.10 1.67 6.31 86.22 0.54 2.21 16 19 C -0.12 -1.68 4.94 30.53 0.15 -1.53 16 20 C -0.07 -0.97 2.37 -11.51 -0.03 -0.99 16 21 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 22 C 0.49 7.63 7.34 71.24 0.52 8.15 16 23 O -0.54 -12.40 14.51 21.96 0.32 -12.09 16 24 O -0.51 -4.94 13.30 -51.39 -0.68 -5.63 16 25 H 0.04 1.21 5.97 -2.39 -0.01 1.19 16 26 H 0.07 1.86 5.65 -2.39 -0.01 1.85 16 27 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.07 1.99 7.00 -2.39 -0.02 1.98 16 30 H 0.10 3.60 7.68 -2.39 -0.02 3.58 16 31 H 0.11 3.70 7.95 -2.39 -0.02 3.68 16 32 H -0.02 -1.36 7.97 -2.39 -0.02 -1.38 16 33 H -0.03 -1.58 7.97 -2.38 -0.02 -1.59 16 34 H 0.25 17.18 7.22 -92.71 -0.67 16.51 16 35 H 0.10 1.67 5.93 -2.39 -0.01 1.66 16 36 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.12 1.00 8.08 -2.39 -0.02 0.98 16 38 H 0.06 1.09 6.34 -2.39 -0.02 1.07 16 39 H 0.43 1.03 9.10 -74.05 -0.67 0.36 16 Total: -1.00 -84.29 313.12 4.31 -79.98 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.49 Total: 7.82 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 3.87 Total: -13.74 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.69 Total: -79.50 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -0.41 Total: -46.90 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.05 Total: 52.33 kcal Total: -84.29 4.31 -79.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589371586.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.878 kcal (2) G-P(sol) polarization free energy of solvation -84.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds