Wall clock time and date at job start Mon Mar 30 2020 01:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.50697 * 109.46935 * 119.99844 * 2 1 3 5 5 H 1.07995 * 120.00151 * 120.00418 * 4 2 1 6 6 C 1.37882 * 119.99852 * 299.99426 * 4 2 1 7 7 N 1.31515 * 120.00421 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99721 * 180.27639 * 6 4 2 9 9 H 1.48498 * 109.46927 * 179.72722 * 8 6 4 10 10 H 1.48503 * 109.47212 * 299.72983 * 8 6 4 11 11 H 1.48502 * 109.47209 * 59.73005 * 8 6 4 12 12 C 1.50694 * 109.46948 * 239.99561 * 2 1 3 13 13 O 1.21280 * 120.00272 * 262.23002 * 12 2 1 14 14 N 1.34780 * 119.99688 * 82.23018 * 12 2 1 15 15 C 1.46923 * 120.63129 * 4.28441 * 14 12 2 16 16 C 1.53633 * 108.54486 * 126.36833 * 15 14 12 17 17 C 1.53040 * 109.23990 * 54.85171 * 16 15 14 18 18 H 1.09000 * 109.45906 * 58.53576 * 17 16 15 19 19 C 1.50703 * 109.45866 * 178.49361 * 17 16 15 20 20 O 1.20815 * 120.00167 * 120.06529 * 19 17 16 21 21 O 1.34231 * 120.00019 * 300.07187 * 19 17 16 22 22 C 1.53035 * 109.53962 * 298.51346 * 17 16 15 23 23 C 1.46932 * 120.62911 * 184.56001 * 14 12 2 24 24 H 1.08993 * 109.58780 * 113.65956 * 23 14 12 25 25 C 1.53002 * 109.58532 * 353.37326 * 23 14 12 26 26 H 1.09008 * 109.46912 * 306.13216 * 1 2 3 27 27 H 1.08996 * 109.47259 * 66.12719 * 1 2 3 28 28 H 1.08993 * 109.47395 * 186.13169 * 1 2 3 29 29 H 0.96998 * 119.99985 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.58416 * 246.19645 * 15 14 12 31 31 H 1.08997 * 109.59016 * 6.62487 * 15 14 12 32 32 H 1.09000 * 109.62957 * 294.86537 * 16 15 14 33 33 H 1.08999 * 109.45886 * 174.74113 * 16 15 14 34 34 H 0.96700 * 117.00485 * 179.97438 * 21 19 17 35 35 H 1.08998 * 109.50091 * 301.41116 * 22 17 16 36 36 H 1.09002 * 109.52664 * 181.33902 * 22 17 16 37 37 H 1.08999 * 109.46908 * 62.97687 * 25 23 14 38 38 H 1.08996 * 109.46831 * 182.97171 * 25 23 14 39 39 H 1.08999 * 109.47255 * 302.97819 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3283 -1.1152 4.0080 9 1 1.8377 -0.4120 5.2204 10 1 1.8339 -2.5155 4.0139 11 1 3.8133 -1.1146 4.0022 12 6 2.0323 -0.7105 -1.2304 13 8 2.3683 -1.8739 -1.1641 14 7 2.1081 -0.0529 -2.4044 15 6 1.7942 1.3803 -2.4814 16 6 2.9790 2.1055 -3.1377 17 6 3.2820 1.4553 -4.4895 18 1 2.3972 1.5072 -5.1239 19 6 4.4198 2.1864 -5.1544 20 8 5.4377 1.5968 -5.4300 21 8 4.3024 3.4926 -5.4403 22 6 3.6719 -0.0093 -4.2772 23 6 2.5004 -0.7571 -3.6329 24 1 1.6576 -0.7845 -4.3234 25 6 2.9297 -2.1852 -3.2905 26 1 -0.3633 0.6060 0.8301 27 1 -0.3633 0.4159 -0.9397 28 1 -0.3634 -1.0217 0.1098 29 1 0.7083 1.1611 3.4844 30 1 0.8956 1.5259 -3.0810 31 1 1.6339 1.7737 -1.4776 32 1 3.8555 2.0318 -2.4939 33 1 2.7246 3.1548 -3.2874 34 1 5.0587 3.9185 -5.8665 35 1 4.5419 -0.0630 -3.6228 36 1 3.9107 -0.4657 -5.2378 37 1 2.0834 -2.7279 -2.8692 38 1 3.2702 -2.6889 -4.1952 39 1 3.7411 -2.1563 -2.5633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:39 Heat of formation + Delta-G solvation = -125.360062 kcal Electronic energy + Delta-G solvation = -21726.490341 eV Core-core repulsion = 18441.206068 eV Total energy + Delta-G solvation = -3285.284273 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.75367 -39.61559 -36.89512 -36.19430 -34.09889 -32.73395 -32.40721 -30.11780 -27.44070 -25.58567 -25.15690 -23.11450 -22.56867 -21.24280 -20.18516 -18.34465 -18.08589 -16.72361 -16.30854 -16.11742 -15.59474 -15.31873 -14.75974 -14.50328 -14.15454 -13.73542 -13.45409 -12.96730 -12.67104 -12.45147 -12.20057 -12.00915 -11.81168 -11.68591 -11.50083 -11.37088 -10.96777 -10.90651 -10.77720 -10.73427 -10.65301 -10.55455 -10.47200 -10.18012 -9.93714 -8.96531 -8.43498 -8.05419 -7.93554 -6.04146 -4.06579 2.06587 2.87538 3.35709 3.38365 3.42849 3.59142 3.70690 4.45814 4.51714 4.64689 4.86227 5.07996 5.22627 5.29293 5.33700 5.38333 5.60866 5.65911 5.74125 5.83647 5.95399 6.07807 6.09582 6.19748 6.21595 6.34221 6.55185 6.65729 6.82089 6.83591 6.98336 7.20804 7.44929 7.74446 7.75177 7.97448 8.09348 8.38248 8.99222 9.24542 9.58318 11.03688 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.005099 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.573398 B = 5490.275255 C = 5820.908137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.029 3.971 3 H 0.048 0.952 4 C -0.500 4.500 5 H 0.069 0.931 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.536 6.536 14 N -0.626 5.626 15 C 0.110 3.890 16 C -0.127 4.127 17 C -0.077 4.077 18 H 0.109 0.891 19 C 0.483 3.517 20 O -0.516 6.516 21 O -0.516 6.516 22 C -0.115 4.115 23 C 0.145 3.855 24 H 0.064 0.936 25 C -0.132 4.132 26 H 0.089 0.911 27 H 0.011 0.989 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.065 0.935 31 H 0.107 0.893 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.407 0.593 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 5.741 -14.953 16.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.008 3.992 3 H 0.065 0.935 4 C -0.539 4.539 5 H 0.088 0.912 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.203 1.203 12 C 0.315 3.685 13 O -0.412 6.412 14 N -0.363 5.363 15 C -0.013 4.013 16 C -0.165 4.165 17 C -0.097 4.097 18 H 0.127 0.873 19 C 0.326 3.674 20 O -0.403 6.403 21 O -0.328 6.328 22 C -0.154 4.154 23 C 0.041 3.959 24 H 0.082 0.918 25 C -0.189 4.189 26 H 0.108 0.892 27 H 0.030 0.970 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.105 0.895 34 H 0.265 0.735 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.742 4.847 -14.629 15.509 hybrid contribution 0.858 0.084 0.383 0.944 sum 2.600 4.931 -14.246 15.298 Atomic orbital electron populations 1.21680 0.96181 1.00997 0.99645 1.18929 0.94225 0.96576 0.89442 0.93465 1.21050 1.31192 1.12531 0.89088 0.91249 1.24924 0.95084 0.95029 0.99030 1.69865 1.37032 1.23008 1.23643 0.86532 0.79231 0.79794 0.81733 1.21369 1.20172 1.20272 1.21943 0.75290 0.87290 0.83941 1.90580 1.48160 1.17779 1.84669 1.48456 1.70287 1.09420 1.08095 1.21826 0.95531 0.80732 1.03244 1.22050 1.00685 0.99957 0.93824 1.21100 0.95322 0.95310 0.97923 0.87293 1.23664 0.88789 0.79926 0.75053 1.90715 1.31243 1.68093 1.50279 1.84555 1.48626 1.25385 1.74213 1.21973 0.99624 0.91684 1.02092 1.21141 0.95016 0.93223 0.86505 0.91839 1.22177 1.04024 0.93373 0.99292 0.89214 0.96975 0.94651 0.92911 0.91721 0.87524 0.90647 0.89537 0.73452 0.90443 0.90401 0.90496 0.94896 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.82 37.16 0.33 -2.57 16 2 C 0.03 0.70 1.81 -92.93 -0.17 0.54 16 3 H 0.05 1.15 6.22 -51.93 -0.32 0.83 16 4 C -0.50 -13.91 8.34 -34.44 -0.29 -14.19 16 5 H 0.07 2.04 6.97 -52.49 -0.37 1.67 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.68 11.39 55.43 0.63 -24.05 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.52 11.56 6.74 -10.99 -0.07 11.48 16 13 O -0.54 -13.18 11.14 5.56 0.06 -13.12 16 14 N -0.63 -10.74 2.97 -164.95 -0.49 -11.23 16 15 C 0.11 1.53 5.98 -3.48 -0.02 1.51 16 16 C -0.13 -1.49 5.31 -26.38 -0.14 -1.63 16 17 C -0.08 -0.86 2.59 -91.73 -0.24 -1.10 16 18 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 19 C 0.48 5.57 7.63 36.01 0.27 5.85 16 20 O -0.52 -7.55 16.74 -18.74 -0.31 -7.87 16 21 O -0.52 -4.49 13.30 -39.26 -0.52 -5.01 16 22 C -0.12 -1.51 3.94 -26.61 -0.10 -1.61 16 23 C 0.14 2.14 3.49 -67.60 -0.24 1.91 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 25 C -0.13 -2.19 7.59 37.16 0.28 -1.90 16 26 H 0.09 2.22 6.26 -51.92 -0.33 1.89 16 27 H 0.01 0.22 7.80 -51.93 -0.40 -0.18 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.65 5.42 -51.93 -0.28 1.37 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.41 1.87 9.10 45.56 0.41 2.28 16 35 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 36 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.08 1.44 6.65 -51.93 -0.35 1.10 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 1.39 6.85 -51.93 -0.36 1.03 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -32.10 310.64 -6.37 -38.47 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -4.92 Total: 1.71 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.48 Total: -0.18 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.14 Total: -35.28 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.77 Total: -26.00 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.10 -6.37 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.893 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds