Wall clock time and date at job start Mon Mar 30 2020 01:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.50697 * 109.46935 * 119.99844 * 2 1 3 5 5 H 1.07995 * 120.00151 * 120.00418 * 4 2 1 6 6 C 1.37882 * 119.99852 * 299.99426 * 4 2 1 7 7 N 1.31515 * 120.00421 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99721 * 180.27639 * 6 4 2 9 9 H 1.48498 * 109.46927 * 179.72722 * 8 6 4 10 10 H 1.48503 * 109.47212 * 299.72983 * 8 6 4 11 11 H 1.48502 * 109.47209 * 59.73005 * 8 6 4 12 12 C 1.50694 * 109.46948 * 239.99561 * 2 1 3 13 13 O 1.21280 * 120.00272 * 262.23002 * 12 2 1 14 14 N 1.34780 * 119.99688 * 82.23018 * 12 2 1 15 15 C 1.46923 * 120.63129 * 4.28441 * 14 12 2 16 16 C 1.53633 * 108.54486 * 126.36833 * 15 14 12 17 17 C 1.53040 * 109.23990 * 54.85171 * 16 15 14 18 18 H 1.09000 * 109.45906 * 58.53576 * 17 16 15 19 19 C 1.50703 * 109.45866 * 178.49361 * 17 16 15 20 20 O 1.20815 * 120.00167 * 120.06529 * 19 17 16 21 21 O 1.34231 * 120.00019 * 300.07187 * 19 17 16 22 22 C 1.53035 * 109.53962 * 298.51346 * 17 16 15 23 23 C 1.46932 * 120.62911 * 184.56001 * 14 12 2 24 24 H 1.08993 * 109.58780 * 113.65956 * 23 14 12 25 25 C 1.53002 * 109.58532 * 353.37326 * 23 14 12 26 26 H 1.09008 * 109.46912 * 306.13216 * 1 2 3 27 27 H 1.08996 * 109.47259 * 66.12719 * 1 2 3 28 28 H 1.08993 * 109.47395 * 186.13169 * 1 2 3 29 29 H 0.96998 * 119.99985 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.58416 * 246.19645 * 15 14 12 31 31 H 1.08997 * 109.59016 * 6.62487 * 15 14 12 32 32 H 1.09000 * 109.62957 * 294.86537 * 16 15 14 33 33 H 1.08999 * 109.45886 * 174.74113 * 16 15 14 34 34 H 0.96700 * 117.00485 * 179.97438 * 21 19 17 35 35 H 1.08998 * 109.50091 * 301.41116 * 22 17 16 36 36 H 1.09002 * 109.52664 * 181.33902 * 22 17 16 37 37 H 1.08999 * 109.46908 * 62.97687 * 25 23 14 38 38 H 1.08996 * 109.46831 * 182.97171 * 25 23 14 39 39 H 1.08999 * 109.47255 * 302.97819 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6034 8 14 2.3283 -1.1152 4.0080 9 1 1.8377 -0.4120 5.2204 10 1 1.8339 -2.5155 4.0139 11 1 3.8133 -1.1146 4.0022 12 6 2.0323 -0.7105 -1.2304 13 8 2.3683 -1.8739 -1.1641 14 7 2.1081 -0.0529 -2.4044 15 6 1.7942 1.3803 -2.4814 16 6 2.9790 2.1055 -3.1377 17 6 3.2820 1.4553 -4.4895 18 1 2.3972 1.5072 -5.1239 19 6 4.4198 2.1864 -5.1544 20 8 5.4377 1.5968 -5.4300 21 8 4.3024 3.4926 -5.4403 22 6 3.6719 -0.0093 -4.2772 23 6 2.5004 -0.7571 -3.6329 24 1 1.6576 -0.7845 -4.3234 25 6 2.9297 -2.1852 -3.2905 26 1 -0.3633 0.6060 0.8301 27 1 -0.3633 0.4159 -0.9397 28 1 -0.3634 -1.0217 0.1098 29 1 0.7083 1.1611 3.4844 30 1 0.8956 1.5259 -3.0810 31 1 1.6339 1.7737 -1.4776 32 1 3.8555 2.0318 -2.4939 33 1 2.7246 3.1548 -3.2874 34 1 5.0587 3.9185 -5.8665 35 1 4.5419 -0.0630 -3.6228 36 1 3.9107 -0.4657 -5.2378 37 1 2.0834 -2.7279 -2.8692 38 1 3.2702 -2.6889 -4.1952 39 1 3.7411 -2.1563 -2.5633 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210568.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:39 Heat of formation + Delta-G solvation = -146.913233 kcal Electronic energy + Delta-G solvation = -21727.424957 eV Core-core repulsion = 18441.206068 eV Total energy + Delta-G solvation = -3286.218889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.80759 -40.91960 -38.21310 -37.07441 -35.96611 -34.07380 -33.79425 -31.93709 -28.66579 -27.22887 -26.69085 -24.75787 -23.62956 -22.57179 -21.26550 -19.79458 -18.98341 -18.31573 -17.69221 -17.47520 -16.88939 -16.58767 -16.40691 -16.12925 -15.26566 -14.99129 -14.61812 -14.36609 -14.26717 -14.02440 -13.53032 -13.43768 -13.15633 -12.95124 -12.88043 -12.69492 -12.60143 -12.52948 -12.43251 -12.15289 -12.07471 -12.00233 -11.79684 -11.62982 -11.45374 -10.97342 -10.51227 -9.64358 -9.42377 -8.13944 -6.22717 1.19795 1.40850 1.41919 1.50272 1.97328 2.10096 2.24057 2.46864 3.16009 3.52439 3.68231 3.90394 3.98702 4.11618 4.29634 4.36349 4.44738 4.54641 4.65918 4.70606 4.79848 4.81077 4.89959 4.96887 5.02369 5.04807 5.08962 5.13531 5.30608 5.44697 5.52313 5.63366 5.75865 5.84901 5.98316 6.23439 6.66052 6.83808 7.01326 7.42677 7.60657 8.91839 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.005099 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.573398 B = 5490.275255 C = 5820.908137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.026 3.974 3 H 0.045 0.955 4 C -0.527 4.527 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.950 3.050 9 H -0.274 1.274 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.573 6.573 14 N -0.619 5.619 15 C 0.103 3.897 16 C -0.118 4.118 17 C -0.074 4.074 18 H 0.145 0.855 19 C 0.492 3.508 20 O -0.553 6.553 21 O -0.506 6.506 22 C -0.108 4.108 23 C 0.143 3.857 24 H 0.099 0.901 25 C -0.126 4.126 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.427 0.573 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.050 0.950 38 H 0.063 0.937 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 7.334 -16.901 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.005 3.995 3 H 0.062 0.938 4 C -0.566 4.566 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.776 3.224 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.203 1.203 12 C 0.310 3.690 13 O -0.453 6.453 14 N -0.354 5.354 15 C -0.019 4.019 16 C -0.156 4.156 17 C -0.092 4.092 18 H 0.163 0.837 19 C 0.336 3.664 20 O -0.444 6.444 21 O -0.319 6.319 22 C -0.146 4.146 23 C 0.041 3.959 24 H 0.117 0.883 25 C -0.183 4.183 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.134 0.866 34 H 0.288 0.712 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.036 6.511 -16.616 17.876 hybrid contribution 1.096 -0.349 0.928 1.478 sum 2.132 6.163 -15.687 16.989 Atomic orbital electron populations 1.21470 0.95242 0.99561 1.00735 1.18851 0.94985 0.96089 0.89617 0.93760 1.21215 1.31682 1.12333 0.91342 0.94002 1.25518 0.95242 0.95716 1.01151 1.69931 1.37109 1.23405 1.24301 0.85738 0.78636 0.78736 0.79266 1.19854 1.20487 1.20284 1.21536 0.75613 0.86815 0.85023 1.90580 1.49950 1.19226 1.85536 1.48393 1.68763 1.10833 1.07396 1.22086 0.98008 0.78527 1.03253 1.21966 0.98723 1.01391 0.93542 1.21071 0.96569 0.93542 0.98054 0.83732 1.23588 0.88014 0.80539 0.74289 1.90719 1.32586 1.69076 1.52036 1.84496 1.49689 1.23867 1.73886 1.21834 0.97522 0.93429 1.01820 1.21352 0.96912 0.91886 0.85751 0.88320 1.21993 1.01747 0.95099 0.99442 0.91154 0.93310 0.96533 0.92605 0.88016 0.89446 0.93081 0.86576 0.71162 0.93488 0.88833 0.93077 0.91866 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.13 8.82 71.98 0.63 -4.49 16 2 C 0.03 1.26 1.81 -12.29 -0.02 1.24 16 3 H 0.04 2.20 6.22 -2.39 -0.01 2.18 16 4 C -0.53 -30.37 8.34 25.60 0.21 -30.15 16 5 H 0.04 2.59 6.97 -2.91 -0.02 2.57 16 6 C 0.02 1.29 5.30 84.66 0.45 1.74 16 7 N -0.91 -50.33 11.39 21.45 0.24 -50.08 16 8 Si 0.95 44.94 29.54 68.60 2.03 46.97 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.52 23.40 6.74 87.65 0.59 23.99 16 13 O -0.57 -29.52 11.14 -3.03 -0.03 -29.56 16 14 N -0.62 -20.57 2.97 -794.18 -2.36 -22.92 16 15 C 0.10 2.59 5.98 86.51 0.52 3.11 16 16 C -0.12 -2.43 5.31 30.82 0.16 -2.27 16 17 C -0.07 -1.37 2.59 -11.51 -0.03 -1.40 16 18 H 0.15 1.77 8.14 -2.39 -0.02 1.75 16 19 C 0.49 9.85 7.63 71.24 0.54 10.39 16 20 O -0.55 -15.24 16.74 22.00 0.37 -14.87 16 21 O -0.51 -6.86 13.30 -51.42 -0.68 -7.54 16 22 C -0.11 -2.59 3.94 30.67 0.12 -2.47 16 23 C 0.14 3.96 3.49 44.97 0.16 4.12 16 24 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 25 C -0.13 -4.18 7.59 71.98 0.55 -3.64 16 26 H 0.07 3.49 6.26 -2.38 -0.01 3.47 16 27 H 0.05 1.81 7.80 -2.39 -0.02 1.80 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 30 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.09 2.59 5.42 -2.39 -0.01 2.57 16 32 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.12 1.76 8.08 -2.39 -0.02 1.74 16 34 H 0.43 2.41 9.10 -74.06 -0.67 1.74 16 35 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.09 1.99 8.07 -2.39 -0.02 1.97 16 37 H 0.05 1.95 6.65 -2.39 -0.02 1.94 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.04 1.44 6.85 -2.39 -0.02 1.43 16 Total: -1.00 -72.66 310.64 3.84 -68.83 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.39 Total: 9.01 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 3.89 Total: 0.17 kcal Atomic # 7 Polarization: -70.90 SS G_CDS: -2.11 Total: -73.01 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -0.35 Total: -51.97 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -72.66 3.84 -68.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210568.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.087 kcal (2) G-P(sol) polarization free energy of solvation -72.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds