Wall clock time and date at job start Mon Mar 30 2020 01:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47092 * 2 1 4 4 C 1.50704 * 109.46991 * 240.00059 * 2 1 3 5 5 H 1.08000 * 120.00350 * 239.99728 * 4 2 1 6 6 C 1.37878 * 120.00018 * 60.00483 * 4 2 1 7 7 N 1.31520 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47086 * 89.99934 * 8 6 4 10 10 H 1.48498 * 109.46906 * 210.00027 * 8 6 4 11 11 H 1.48498 * 109.46881 * 329.99879 * 8 6 4 12 12 C 1.50696 * 109.46927 * 120.00488 * 2 1 3 13 13 O 1.21282 * 120.00157 * 110.90052 * 12 2 1 14 14 N 1.34783 * 119.99842 * 290.89807 * 12 2 1 15 15 C 1.46924 * 120.62978 * 5.06041 * 14 12 2 16 16 C 1.53194 * 108.77109 * 126.36867 * 15 14 12 17 17 C 1.53039 * 109.31249 * 54.63643 * 16 15 14 18 18 H 1.09000 * 109.46066 * 58.64512 * 17 16 15 19 19 C 1.50704 * 109.45911 * 178.61026 * 17 16 15 20 20 O 1.20828 * 119.99732 * 120.00216 * 19 17 16 21 21 O 1.34222 * 120.00271 * 300.00267 * 19 17 16 22 22 C 1.53069 * 109.65769 * 298.69666 * 17 16 15 23 23 C 1.46925 * 120.62755 * 185.04029 * 14 12 2 24 24 H 1.08997 * 109.58774 * 113.70590 * 23 14 12 25 25 C 1.52998 * 109.59078 * 353.41843 * 23 14 12 26 26 H 1.08995 * 109.47123 * 293.49171 * 1 2 3 27 27 H 1.09003 * 109.46760 * 53.48794 * 1 2 3 28 28 H 1.09001 * 109.47391 * 173.48434 * 1 2 3 29 29 H 0.96999 * 120.00206 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.58527 * 246.15665 * 15 14 12 31 31 H 1.09005 * 109.58538 * 6.44426 * 15 14 12 32 32 H 1.08997 * 109.49701 * 174.58848 * 16 15 14 33 33 H 1.09005 * 109.50089 * 294.65014 * 16 15 14 34 34 H 0.96705 * 117.00244 * 180.02562 * 21 19 17 35 35 H 1.09000 * 109.39139 * 301.27294 * 22 17 16 36 36 H 1.09004 * 109.62231 * 181.17495 * 22 17 16 37 37 H 1.09003 * 109.47325 * 63.29590 * 25 23 14 38 38 H 1.09006 * 109.46921 * 303.30095 * 25 23 14 39 39 H 1.08995 * 109.47361 * 183.30355 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 8 2.5877 -1.7837 1.1267 14 7 1.8643 -0.1533 2.4461 15 6 1.0975 1.0905 2.6000 16 6 0.0038 0.8688 3.6495 17 6 0.6407 0.3587 4.9442 18 1 1.3729 1.0841 5.2991 19 6 -0.4283 0.1719 5.9899 20 8 -0.6161 -0.9193 6.4735 21 8 -1.1717 1.2176 6.3840 22 6 1.3378 -0.9788 4.6831 23 6 2.4442 -0.7784 3.6426 24 1 3.2193 -0.1317 4.0535 25 6 3.0502 -2.1332 3.2710 26 1 -0.3633 0.4096 0.9424 27 1 -0.3633 0.6115 -0.8260 28 1 -0.3634 -1.0210 -0.1166 29 1 0.7082 1.1611 -3.4844 30 1 1.7612 1.8907 2.9273 31 1 0.6428 1.3598 1.6466 32 1 -0.5106 1.8100 3.8433 33 1 -0.7107 0.1329 3.2805 34 1 -1.8448 1.0488 7.0575 35 1 0.6106 -1.6985 4.3070 36 1 1.7733 -1.3517 5.6101 37 1 3.8692 -1.9842 2.5673 38 1 2.2856 -2.7594 2.8112 39 1 3.4275 -2.6213 4.1696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592210569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:41 Heat of formation + Delta-G solvation = -120.871240 kcal Electronic energy + Delta-G solvation = -21798.008537 eV Core-core repulsion = 18512.918914 eV Total energy + Delta-G solvation = -3285.089623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.77764 -39.65027 -36.88428 -36.20329 -34.23035 -32.74281 -32.42742 -30.03563 -27.55593 -25.59231 -25.18538 -22.96424 -22.52220 -21.28701 -20.32210 -18.32446 -18.09920 -16.72908 -16.26291 -16.05597 -15.66585 -15.38767 -14.62996 -14.47915 -14.25968 -13.77637 -13.39520 -13.06534 -13.01789 -12.34150 -12.17283 -11.92923 -11.82240 -11.70038 -11.50052 -11.33300 -10.97682 -10.92238 -10.85113 -10.75000 -10.60896 -10.52442 -10.26099 -10.17359 -9.91273 -8.96616 -8.43545 -8.05020 -7.94168 -6.03408 -4.05455 2.05385 2.86442 3.34029 3.39828 3.45481 3.59047 3.70506 4.46656 4.50929 4.63573 4.85634 5.07591 5.21971 5.30540 5.33511 5.38403 5.60705 5.65204 5.73754 5.83324 5.93912 6.05407 6.09359 6.19826 6.21324 6.33073 6.55047 6.62009 6.79359 6.84692 6.94902 7.19908 7.46617 7.73279 7.74375 7.99060 8.09011 8.39092 9.02559 9.24832 9.59850 11.04744 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031704 B = 0.005019 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.967869 B = 5577.338713 C = 6162.809677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.029 3.971 3 H 0.049 0.951 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.523 3.477 13 O -0.534 6.534 14 N -0.626 5.626 15 C 0.102 3.898 16 C -0.126 4.126 17 C -0.077 4.077 18 H 0.109 0.891 19 C 0.483 3.517 20 O -0.516 6.516 21 O -0.516 6.516 22 C -0.115 4.115 23 C 0.145 3.855 24 H 0.064 0.936 25 C -0.132 4.132 26 H 0.021 0.979 27 H 0.089 0.911 28 H 0.034 0.966 29 H 0.260 0.740 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.407 0.593 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 3.953 15.726 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 H 0.067 0.933 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.315 3.685 13 O -0.410 6.410 14 N -0.362 5.362 15 C -0.021 4.021 16 C -0.164 4.164 17 C -0.097 4.097 18 H 0.127 0.873 19 C 0.326 3.674 20 O -0.403 6.403 21 O -0.328 6.328 22 C -0.154 4.154 23 C 0.041 3.959 24 H 0.082 0.918 25 C -0.189 4.189 26 H 0.040 0.960 27 H 0.108 0.892 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.266 0.734 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -2.078 3.238 15.327 15.802 hybrid contribution -0.324 -0.392 -0.188 0.542 sum -2.402 2.845 15.139 15.590 Atomic orbital electron populations 1.21941 0.96559 1.01153 0.99912 1.18889 0.94069 0.96723 0.89511 0.93318 1.21134 1.31026 1.12642 0.88997 0.90874 1.24936 0.95135 0.95032 0.99068 1.69878 1.37194 1.23089 1.23503 0.86468 0.79444 0.79250 0.82142 1.20714 1.21344 1.19789 1.21948 0.77079 0.85471 0.84040 1.90578 1.42658 1.21843 1.85930 1.48424 1.55086 1.25919 1.06802 1.21916 0.92692 0.86517 1.01023 1.21959 0.98930 1.02500 0.93035 1.21104 0.94399 1.01151 0.93007 0.87288 1.23667 0.81052 0.81442 0.81272 1.90718 1.67593 1.26986 1.55048 1.84555 1.48830 1.41283 1.58095 1.21980 0.98653 0.94870 0.99848 1.21136 0.93526 0.95875 0.85376 0.91832 1.22175 1.02736 0.94760 0.99186 0.96045 0.89214 0.94698 0.93013 0.91887 0.86708 0.89513 0.90706 0.73449 0.90517 0.90374 0.90519 0.90935 0.94896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.37 37.16 0.31 -2.77 16 2 C 0.03 0.70 1.80 -92.92 -0.17 0.53 16 3 H 0.05 1.21 7.70 -51.93 -0.40 0.81 16 4 C -0.50 -13.91 8.36 -34.44 -0.29 -14.20 16 5 H 0.07 2.16 6.79 -52.49 -0.36 1.80 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.76 11.39 55.43 0.63 -24.12 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 12 C 0.52 11.53 6.91 -10.98 -0.08 11.46 16 13 O -0.53 -13.14 10.91 5.56 0.06 -13.08 16 14 N -0.63 -10.71 2.97 -165.22 -0.49 -11.20 16 15 C 0.10 1.41 5.53 -3.71 -0.02 1.39 16 16 C -0.13 -1.45 5.18 -26.61 -0.14 -1.59 16 17 C -0.08 -0.85 2.58 -91.71 -0.24 -1.09 16 18 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 19 C 0.48 5.50 7.63 36.01 0.27 5.77 16 20 O -0.52 -7.47 16.74 -18.75 -0.31 -7.78 16 21 O -0.52 -4.41 13.30 -39.24 -0.52 -4.93 16 22 C -0.12 -1.49 3.95 -26.60 -0.11 -1.60 16 23 C 0.14 2.14 3.49 -67.60 -0.24 1.90 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 C -0.13 -2.18 7.59 37.16 0.28 -1.90 16 26 H 0.02 0.39 5.18 -51.93 -0.27 0.12 16 27 H 0.09 2.18 6.27 -51.93 -0.33 1.86 16 28 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.12 1.77 4.10 -51.93 -0.21 1.56 16 32 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.41 1.80 9.10 45.56 0.41 2.22 16 35 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 36 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 37 H 0.08 1.45 6.69 -51.93 -0.35 1.10 16 38 H 0.07 1.38 6.81 -51.93 -0.35 1.03 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -32.11 306.91 -6.30 -38.42 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.78 Total: 2.01 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.49 Total: -0.57 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.14 Total: -35.33 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.78 Total: -25.79 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.11 -6.30 -38.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.456 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds