Wall clock time and date at job start Mon Mar 30 2020 01:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47092 * 2 1 4 4 C 1.50704 * 109.46991 * 240.00059 * 2 1 3 5 5 H 1.08000 * 120.00350 * 239.99728 * 4 2 1 6 6 C 1.37878 * 120.00018 * 60.00483 * 4 2 1 7 7 N 1.31520 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47086 * 89.99934 * 8 6 4 10 10 H 1.48498 * 109.46906 * 210.00027 * 8 6 4 11 11 H 1.48498 * 109.46881 * 329.99879 * 8 6 4 12 12 C 1.50696 * 109.46927 * 120.00488 * 2 1 3 13 13 O 1.21282 * 120.00157 * 110.90052 * 12 2 1 14 14 N 1.34783 * 119.99842 * 290.89807 * 12 2 1 15 15 C 1.46924 * 120.62978 * 5.06041 * 14 12 2 16 16 C 1.53194 * 108.77109 * 126.36867 * 15 14 12 17 17 C 1.53039 * 109.31249 * 54.63643 * 16 15 14 18 18 H 1.09000 * 109.46066 * 58.64512 * 17 16 15 19 19 C 1.50704 * 109.45911 * 178.61026 * 17 16 15 20 20 O 1.20828 * 119.99732 * 120.00216 * 19 17 16 21 21 O 1.34222 * 120.00271 * 300.00267 * 19 17 16 22 22 C 1.53069 * 109.65769 * 298.69666 * 17 16 15 23 23 C 1.46925 * 120.62755 * 185.04029 * 14 12 2 24 24 H 1.08997 * 109.58774 * 113.70590 * 23 14 12 25 25 C 1.52998 * 109.59078 * 353.41843 * 23 14 12 26 26 H 1.08995 * 109.47123 * 293.49171 * 1 2 3 27 27 H 1.09003 * 109.46760 * 53.48794 * 1 2 3 28 28 H 1.09001 * 109.47391 * 173.48434 * 1 2 3 29 29 H 0.96999 * 120.00206 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.58527 * 246.15665 * 15 14 12 31 31 H 1.09005 * 109.58538 * 6.44426 * 15 14 12 32 32 H 1.08997 * 109.49701 * 174.58848 * 16 15 14 33 33 H 1.09005 * 109.50089 * 294.65014 * 16 15 14 34 34 H 0.96705 * 117.00244 * 180.02562 * 21 19 17 35 35 H 1.09000 * 109.39139 * 301.27294 * 22 17 16 36 36 H 1.09004 * 109.62231 * 181.17495 * 22 17 16 37 37 H 1.09003 * 109.47325 * 63.29590 * 25 23 14 38 38 H 1.09006 * 109.46921 * 303.30095 * 25 23 14 39 39 H 1.08995 * 109.47361 * 183.30355 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3448 -2.1613 -4.4125 10 1 2.4873 -0.1400 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0323 -0.7105 1.2304 13 8 2.5877 -1.7837 1.1267 14 7 1.8643 -0.1533 2.4461 15 6 1.0975 1.0905 2.6000 16 6 0.0038 0.8688 3.6495 17 6 0.6407 0.3587 4.9442 18 1 1.3729 1.0841 5.2991 19 6 -0.4283 0.1719 5.9899 20 8 -0.6161 -0.9193 6.4735 21 8 -1.1717 1.2176 6.3840 22 6 1.3378 -0.9788 4.6831 23 6 2.4442 -0.7784 3.6426 24 1 3.2193 -0.1317 4.0535 25 6 3.0502 -2.1332 3.2710 26 1 -0.3633 0.4096 0.9424 27 1 -0.3633 0.6115 -0.8260 28 1 -0.3634 -1.0210 -0.1166 29 1 0.7082 1.1611 -3.4844 30 1 1.7612 1.8907 2.9273 31 1 0.6428 1.3598 1.6466 32 1 -0.5106 1.8100 3.8433 33 1 -0.7107 0.1329 3.2805 34 1 -1.8448 1.0488 7.0575 35 1 0.6106 -1.6985 4.3070 36 1 1.7733 -1.3517 5.6101 37 1 3.8692 -1.9842 2.5673 38 1 2.2856 -2.7594 2.8112 39 1 3.4275 -2.6213 4.1696 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592210569.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:41 Heat of formation + Delta-G solvation = -142.588482 kcal Electronic energy + Delta-G solvation = -21798.950267 eV Core-core repulsion = 18512.918914 eV Total energy + Delta-G solvation = -3286.031353 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.83369 -40.93199 -38.19681 -37.06697 -36.06313 -34.11833 -33.83209 -31.82882 -28.78733 -27.21984 -26.71226 -24.57717 -23.59300 -22.66242 -21.36566 -19.73718 -18.97804 -18.27337 -17.68795 -17.46371 -16.93754 -16.63766 -16.36304 -16.01678 -15.40371 -14.92656 -14.75767 -14.43336 -14.38973 -14.04568 -13.48739 -13.35809 -13.04793 -12.97749 -12.85311 -12.72479 -12.60423 -12.51382 -12.37165 -12.18466 -12.04050 -11.94467 -11.73876 -11.59094 -11.38890 -11.00024 -10.51343 -9.65248 -9.42303 -8.13467 -6.22092 1.20610 1.40494 1.41758 1.52922 1.96532 2.10837 2.23461 2.47740 3.16734 3.52811 3.68365 3.90747 3.99494 4.11047 4.29254 4.36546 4.46373 4.54720 4.66470 4.70694 4.76770 4.81093 4.86882 4.95359 5.01831 5.03925 5.07579 5.18216 5.30862 5.43988 5.52843 5.64144 5.76750 5.84797 5.99163 6.23758 6.66060 6.86312 7.02225 7.43913 7.60376 8.92704 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.031704 B = 0.005019 C = 0.004542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.967869 B = 5577.338713 C = 6162.809677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.027 3.973 3 H 0.041 0.959 4 C -0.527 4.527 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.518 3.482 13 O -0.572 6.572 14 N -0.619 5.619 15 C 0.095 3.905 16 C -0.117 4.117 17 C -0.074 4.074 18 H 0.143 0.857 19 C 0.492 3.508 20 O -0.553 6.553 21 O -0.506 6.506 22 C -0.107 4.107 23 C 0.143 3.857 24 H 0.096 0.904 25 C -0.125 4.125 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.055 0.945 34 H 0.427 0.573 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.038 0.962 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 5.691 17.577 18.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.006 3.994 3 H 0.059 0.941 4 C -0.565 4.565 5 H 0.064 0.936 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.778 3.222 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.309 3.691 13 O -0.451 6.451 14 N -0.353 5.353 15 C -0.027 4.027 16 C -0.156 4.156 17 C -0.093 4.093 18 H 0.160 0.840 19 C 0.336 3.664 20 O -0.444 6.444 21 O -0.319 6.319 22 C -0.145 4.145 23 C 0.040 3.960 24 H 0.113 0.887 25 C -0.183 4.183 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.289 0.711 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.409 5.034 17.222 18.104 hybrid contribution -0.251 -0.884 -0.692 1.151 sum -2.660 4.149 16.530 17.249 Atomic orbital electron populations 1.21749 0.95409 0.99605 1.01253 1.18785 0.94964 0.95927 0.89742 0.94077 1.21292 1.31519 1.12481 0.91232 0.93577 1.25541 0.95283 0.95727 1.01231 1.69947 1.37282 1.23504 1.24197 0.85655 0.78578 0.78543 0.79452 1.20363 1.19921 1.20410 1.21544 0.77200 0.85074 0.85260 1.90579 1.44428 1.23289 1.86811 1.48354 1.54453 1.26569 1.05949 1.22152 0.93712 0.85703 1.01146 1.21893 0.97739 1.03530 0.92398 1.21068 0.95023 1.00448 0.92767 0.83988 1.23561 0.80872 0.81175 0.80761 1.90724 1.68680 1.28480 1.56491 1.84495 1.48985 1.39865 1.58587 1.21834 0.97490 0.95766 0.99416 1.21337 0.94865 0.95126 0.84632 0.88659 1.21990 1.00890 0.95898 0.99485 0.92079 0.91195 0.96757 0.92676 0.88594 0.88520 0.86462 0.92575 0.71148 0.93231 0.88873 0.93360 0.94271 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.37 71.98 0.60 -4.95 16 2 C 0.03 1.33 1.80 -12.29 -0.02 1.31 16 3 H 0.04 2.08 7.70 -2.39 -0.02 2.06 16 4 C -0.53 -30.39 8.36 25.60 0.21 -30.17 16 5 H 0.05 2.86 6.79 -2.91 -0.02 2.84 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -50.56 11.39 21.45 0.24 -50.32 16 8 Si 0.95 45.02 29.54 68.60 2.03 47.04 16 9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 12 C 0.52 23.40 6.91 87.65 0.61 24.01 16 13 O -0.57 -29.49 10.91 -3.04 -0.03 -29.52 16 14 N -0.62 -20.52 2.97 -795.04 -2.36 -22.89 16 15 C 0.09 2.36 5.53 86.36 0.48 2.84 16 16 C -0.12 -2.31 5.18 30.67 0.16 -2.15 16 17 C -0.07 -1.35 2.58 -11.50 -0.03 -1.38 16 18 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 19 C 0.49 9.55 7.63 71.24 0.54 10.10 16 20 O -0.55 -14.85 16.74 21.96 0.37 -14.48 16 21 O -0.51 -6.56 13.30 -51.34 -0.68 -7.25 16 22 C -0.11 -2.52 3.95 30.68 0.12 -2.39 16 23 C 0.14 3.96 3.49 44.97 0.16 4.12 16 24 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 25 C -0.13 -4.18 7.59 71.98 0.55 -3.63 16 26 H 0.06 2.22 5.18 -2.39 -0.01 2.21 16 27 H 0.07 3.44 6.27 -2.39 -0.01 3.43 16 28 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 30 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.80 4.10 -2.38 -0.01 2.79 16 32 H 0.12 1.67 8.08 -2.39 -0.02 1.65 16 33 H 0.06 1.34 8.08 -2.38 -0.02 1.32 16 34 H 0.43 2.17 9.10 -74.05 -0.67 1.50 16 35 H 0.05 1.45 8.12 -2.39 -0.02 1.43 16 36 H 0.09 1.96 8.07 -2.38 -0.02 1.94 16 37 H 0.05 1.87 6.69 -2.39 -0.02 1.85 16 38 H 0.04 1.55 6.81 -2.38 -0.02 1.53 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.69 306.91 3.78 -68.91 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.39 Total: 9.18 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: 3.82 Total: -0.67 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -2.12 Total: -73.21 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.35 Total: -51.25 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -72.69 3.78 -68.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592210569.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.677 kcal (2) G-P(sol) polarization free energy of solvation -72.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds