Wall clock time and date at job start Mon Mar 30 2020 01:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46471 * 2 1 4 4 C 1.50696 * 109.47127 * 119.99900 * 2 1 3 5 5 H 1.08003 * 119.99765 * 119.99797 * 4 2 1 6 6 C 1.37872 * 120.00068 * 300.00219 * 4 2 1 7 7 N 1.31516 * 120.00446 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99928 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47047 * 89.99608 * 8 6 4 10 10 H 1.48493 * 109.47333 * 210.00155 * 8 6 4 11 11 H 1.48509 * 109.47060 * 330.00351 * 8 6 4 12 12 C 1.50702 * 109.47236 * 240.00428 * 2 1 3 13 13 O 1.21275 * 119.99996 * 257.63691 * 12 2 1 14 14 N 1.34783 * 120.00052 * 77.63250 * 12 2 1 15 15 C 1.46496 * 119.99769 * 5.26452 * 14 12 2 16 16 H 1.08999 * 109.47173 * 358.40479 * 15 14 12 17 17 C 1.53002 * 109.47027 * 118.40471 * 15 14 12 18 18 C 1.50701 * 109.46928 * 238.39948 * 15 14 12 19 19 O 1.20823 * 120.00329 * 0.02562 * 18 15 14 20 20 O 1.34229 * 119.99734 * 180.02562 * 18 15 14 21 21 C 1.46495 * 119.99510 * 185.26291 * 14 12 2 22 22 C 1.53783 * 113.61545 * 74.78863 * 21 14 12 23 23 C 1.53780 * 87.08194 * 270.87929 * 22 21 14 24 24 C 1.53776 * 113.61857 * 337.28814 * 21 14 12 25 25 H 1.09002 * 109.47265 * 305.50901 * 1 2 3 26 26 H 1.09004 * 109.47504 * 65.51269 * 1 2 3 27 27 H 1.09007 * 109.47110 * 185.50905 * 1 2 3 28 28 H 0.96997 * 119.99928 * 180.02562 * 7 6 4 29 29 H 1.08998 * 109.47459 * 180.02562 * 17 15 14 30 30 H 1.09001 * 109.46788 * 299.99627 * 17 15 14 31 31 H 1.09000 * 109.46936 * 59.99229 * 17 15 14 32 32 H 0.96702 * 117.00110 * 180.02562 * 20 18 15 33 33 H 1.09001 * 112.90608 * 206.03434 * 21 14 12 34 34 H 1.09003 * 113.61462 * 25.43136 * 22 21 14 35 35 H 1.09004 * 113.61468 * 156.33074 * 22 21 14 36 36 H 1.09002 * 113.61261 * 89.11237 * 23 22 21 37 37 H 1.08996 * 113.61302 * 220.01712 * 23 22 21 38 38 H 1.09000 * 113.61445 * 203.66472 * 24 21 14 39 39 H 1.08999 * 113.61965 * 334.48456 * 24 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9494 5.1119 11 1 2.4859 -2.5663 3.7118 12 6 2.0324 -0.7103 -1.2305 13 8 2.4465 -1.8472 -1.1478 14 7 2.0213 -0.0822 -2.4230 15 6 1.6302 1.3272 -2.5048 16 1 1.3574 1.6868 -1.5126 17 6 2.8023 2.1514 -3.0414 18 6 0.4508 1.4682 -3.4322 19 8 -0.0155 0.4916 -3.9694 20 8 -0.0816 2.6789 -3.6616 21 6 2.4004 -0.8090 -3.6371 22 6 1.3231 -1.7895 -4.1299 23 6 1.9834 -2.8455 -3.2277 24 6 3.2846 -2.0381 -3.3686 25 1 -0.3634 0.5969 0.8366 26 1 -0.3634 0.4260 -0.9352 27 1 -0.3634 -1.0230 0.0987 28 1 0.7087 1.1611 3.4844 29 1 2.5116 3.2001 -3.1019 30 1 3.6554 2.0494 -2.3706 31 1 3.0752 1.7917 -4.0335 32 1 -0.8373 2.7193 -4.2636 33 1 2.7868 -0.1557 -4.4194 34 1 0.3132 -1.5204 -3.8202 35 1 1.3941 -2.0179 -5.1933 36 1 1.5873 -2.8615 -2.2123 37 1 2.0330 -3.8362 -3.6794 38 1 3.8918 -2.3344 -4.2240 39 1 3.8595 -1.9692 -2.4451 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211184.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:59 Heat of formation + Delta-G solvation = -94.932468 kcal Electronic energy + Delta-G solvation = -22567.913222 eV Core-core repulsion = 19283.948389 eV Total energy + Delta-G solvation = -3283.964833 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.27821 -40.82831 -38.20824 -37.13781 -36.52645 -35.48780 -32.47124 -31.35797 -27.32943 -26.60910 -26.40611 -25.90253 -24.29543 -22.57975 -21.25967 -19.17005 -18.86575 -18.46097 -18.17508 -17.55358 -16.87594 -16.47956 -16.28365 -16.06135 -15.53755 -15.02852 -14.79476 -14.52936 -14.32378 -14.02622 -13.43693 -13.24721 -13.09600 -13.03126 -12.92596 -12.73396 -12.63257 -12.44575 -12.40574 -12.29111 -12.02292 -11.72352 -11.32688 -11.11303 -11.01361 -10.95162 -10.53236 -9.92358 -9.49204 -8.15286 -6.24301 1.20760 1.40956 1.42787 1.53605 1.63243 1.92036 2.32527 2.45692 3.15238 3.60357 3.84086 3.92519 4.03355 4.04688 4.19480 4.21251 4.36252 4.53366 4.65324 4.78449 4.82999 4.84781 4.85421 4.95275 4.99312 5.11821 5.23728 5.31057 5.36439 5.45674 5.62506 5.71786 5.73336 5.82574 5.92297 6.15248 6.51177 6.82338 7.05519 7.40631 7.50983 8.91234 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.007370 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.053562 B = 3798.157189 C = 4602.128718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.027 3.973 3 H 0.048 0.952 4 C -0.524 4.524 5 H 0.049 0.951 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.281 1.281 12 C 0.516 3.484 13 O -0.539 6.539 14 N -0.586 5.586 15 C 0.135 3.865 16 H 0.129 0.871 17 C -0.148 4.148 18 C 0.474 3.526 19 O -0.523 6.523 20 O -0.504 6.504 21 C 0.125 3.875 22 C -0.139 4.139 23 C -0.155 4.155 24 C -0.134 4.134 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.428 0.572 33 H 0.108 0.892 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.796 5.658 -14.317 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.006 3.994 3 H 0.065 0.935 4 C -0.562 4.562 5 H 0.068 0.932 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.779 3.221 9 H -0.197 1.197 10 H -0.203 1.203 11 H -0.207 1.207 12 C 0.308 3.692 13 O -0.416 6.416 14 N -0.320 5.320 15 C 0.030 3.970 16 H 0.146 0.854 17 C -0.206 4.206 18 C 0.315 3.685 19 O -0.412 6.412 20 O -0.317 6.317 21 C 0.022 3.978 22 C -0.178 4.178 23 C -0.192 4.192 24 C -0.171 4.171 25 H 0.094 0.906 26 H 0.048 0.952 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.290 0.710 33 H 0.126 0.874 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.116 0.884 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.133 4.894 -14.021 14.893 hybrid contribution -0.540 -0.604 0.672 1.053 sum 0.593 4.290 -13.349 14.034 Atomic orbital electron populations 1.21502 0.95924 0.99594 0.99939 1.18851 0.94319 0.96366 0.89914 0.93478 1.21206 1.31697 1.12520 0.90813 0.93245 1.25541 0.95149 0.95700 1.01271 1.69933 1.37030 1.23535 1.24345 0.85634 0.78456 0.78731 0.79291 1.19707 1.20276 1.20651 1.21491 0.76690 0.86288 0.84752 1.90436 1.46222 1.19338 1.85628 1.47548 1.67250 1.10429 1.06740 1.20907 0.92733 0.82903 1.00486 0.85359 1.22098 0.95765 1.00475 1.02238 1.23833 0.83950 0.80806 0.79898 1.90718 1.61442 1.39838 1.49197 1.84483 1.49936 1.32155 1.65114 1.21958 0.96426 0.92928 0.86493 1.23421 0.99008 0.95756 0.99568 1.23440 0.97869 0.97306 1.00606 1.23192 0.96951 0.95303 1.01694 0.90593 0.95226 0.96442 0.92561 0.87813 0.90708 0.90655 0.71038 0.87412 0.92072 0.88583 0.90259 0.92546 0.88351 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.30 8.59 71.98 0.62 -4.69 16 2 C 0.03 1.31 1.77 -12.29 -0.02 1.29 16 3 H 0.05 2.30 6.55 -2.38 -0.02 2.29 16 4 C -0.52 -29.57 8.35 25.60 0.21 -29.35 16 5 H 0.05 2.97 6.90 -2.91 -0.02 2.95 16 6 C 0.02 1.26 5.30 84.65 0.45 1.70 16 7 N -0.91 -49.87 11.38 21.45 0.24 -49.63 16 8 Si 0.95 44.29 29.54 68.60 2.03 46.32 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 12 C 0.52 23.31 6.37 87.66 0.56 23.86 16 13 O -0.54 -26.99 9.20 -3.01 -0.03 -27.02 16 14 N -0.59 -20.77 2.37 -775.29 -1.83 -22.61 16 15 C 0.14 3.91 2.40 44.25 0.11 4.02 16 16 H 0.13 4.13 4.97 -2.39 -0.01 4.12 16 17 C -0.15 -3.08 9.15 71.98 0.66 -2.43 16 18 C 0.47 12.61 7.25 71.24 0.52 13.12 16 19 O -0.52 -16.60 13.21 21.97 0.29 -16.31 16 20 O -0.50 -9.51 13.33 -51.41 -0.69 -10.19 16 21 C 0.13 3.93 3.51 45.52 0.16 4.09 16 22 C -0.14 -4.50 6.81 31.12 0.21 -4.29 16 23 C -0.16 -5.66 7.25 31.12 0.23 -5.43 16 24 C -0.13 -4.43 7.17 31.12 0.22 -4.21 16 25 H 0.08 3.85 6.24 -2.39 -0.01 3.84 16 26 H 0.03 1.22 6.92 -2.38 -0.02 1.20 16 27 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 29 H 0.10 1.69 8.11 -2.39 -0.02 1.67 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.07 1.36 6.84 -2.39 -0.02 1.35 16 32 H 0.43 4.26 9.10 -74.06 -0.67 3.59 16 33 H 0.11 2.72 6.79 -2.39 -0.02 2.70 16 34 H 0.06 2.30 6.10 -2.39 -0.01 2.28 16 35 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 36 H 0.08 3.62 5.07 -34.05 -0.17 3.45 16 37 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.06 2.44 6.16 -2.39 -0.01 2.42 16 Total: -1.00 -67.46 303.05 4.18 -63.28 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.25 Total: 18.47 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 3.92 Total: -2.31 kcal Atomic # 7 Polarization: -70.64 SS G_CDS: -1.59 Total: -72.24 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -0.42 Total: -53.52 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Total: -67.46 4.18 -63.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211184.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.649 kcal (2) G-P(sol) polarization free energy of solvation -67.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds