Wall clock time and date at job start Mon Mar 30 2020 01:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47243 * 2 1 4 4 C 1.50700 * 109.46860 * 240.00344 * 2 1 3 5 5 H 1.08000 * 119.99856 * 245.52844 * 4 2 1 6 6 C 1.37879 * 120.00072 * 65.51969 * 4 2 1 7 7 N 1.31509 * 120.00332 * 8.67743 * 6 4 2 8 8 Si 1.86807 * 119.99789 * 188.94988 * 6 4 2 9 9 H 1.48503 * 109.46978 * 179.72764 * 8 6 4 10 10 H 1.48502 * 109.47041 * 299.72886 * 8 6 4 11 11 H 1.48499 * 109.46911 * 59.72680 * 8 6 4 12 12 C 1.50698 * 109.47372 * 120.00056 * 2 1 3 13 13 O 1.21287 * 119.99836 * 103.83169 * 12 2 1 14 14 N 1.34773 * 120.00266 * 283.83701 * 12 2 1 15 15 C 1.46502 * 119.99771 * 4.54382 * 14 12 2 16 16 H 1.08996 * 109.46952 * 359.97438 * 15 14 12 17 17 C 1.53006 * 109.46806 * 239.99811 * 15 14 12 18 18 C 1.50698 * 109.47080 * 120.00005 * 15 14 12 19 19 O 1.20824 * 120.00420 * 359.97438 * 18 15 14 20 20 O 1.34234 * 119.99581 * 179.97438 * 18 15 14 21 21 C 1.46497 * 120.00319 * 184.54274 * 14 12 2 22 22 C 1.53777 * 113.61360 * 41.81150 * 21 14 12 23 23 C 1.53779 * 87.08154 * 220.02099 * 22 21 14 24 24 C 1.53771 * 87.08295 * 25.43597 * 23 22 21 25 25 H 1.09000 * 109.46930 * 182.66648 * 1 2 3 26 26 H 1.09002 * 109.46650 * 302.65813 * 1 2 3 27 27 H 1.08996 * 109.47288 * 62.65723 * 1 2 3 28 28 H 0.97006 * 119.99621 * 0.28934 * 7 6 4 29 29 H 1.08999 * 109.46676 * 60.00089 * 17 15 14 30 30 H 1.08994 * 109.46690 * 179.97438 * 17 15 14 31 31 H 1.08996 * 109.47229 * 299.99664 * 17 15 14 32 32 H 0.96697 * 116.99722 * 180.02562 * 20 18 15 33 33 H 1.09003 * 112.85323 * 173.12265 * 21 14 12 34 34 H 1.09007 * 113.61654 * 334.56909 * 22 21 14 35 35 H 1.08998 * 113.61241 * 105.47401 * 22 21 14 36 36 H 1.09006 * 113.61635 * 270.88321 * 23 22 21 37 37 H 1.09007 * 113.61829 * 139.98357 * 23 22 21 38 38 H 1.09006 * 113.61560 * 220.02011 * 24 23 22 39 39 H 1.08995 * 113.69620 * 89.12441 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5776 -1.6376 -1.1340 6 6 1.7956 -0.1766 -2.4796 7 7 1.2852 1.0301 -2.5931 8 14 2.1927 -1.1706 -4.0106 9 1 1.8424 -0.3806 -5.2183 10 1 3.6429 -1.4896 -4.0312 11 1 1.4085 -2.4316 -3.9992 12 6 2.0324 -0.7104 1.2304 13 8 2.4713 -1.8377 1.1431 14 7 1.9939 -0.0932 2.4279 15 6 1.3732 1.2281 2.5513 16 1 1.0023 1.5476 1.5774 17 6 2.4101 2.2334 3.0565 18 6 0.2270 1.1555 3.5269 19 8 -0.0440 0.1076 4.0638 20 8 -0.4929 2.2552 3.7995 21 6 2.5727 -0.7435 3.6062 22 6 3.9176 -1.4358 3.3293 23 6 3.4301 -2.5737 4.2416 24 6 1.9985 -2.1433 3.8816 25 1 -0.3633 -1.0266 0.0478 26 1 -0.3633 0.5546 0.8652 27 1 -0.3634 0.4720 -0.9128 28 1 1.0792 1.5463 -1.7981 29 1 3.2392 2.2859 2.3507 30 1 1.9485 3.2165 3.1478 31 1 2.7814 1.9141 4.0302 32 1 -1.2180 2.1595 4.4321 33 1 2.5855 -0.0965 4.4833 34 1 4.0486 -1.7355 2.2895 35 1 4.7768 -0.8953 3.7266 36 1 3.6787 -2.4275 5.2928 37 1 3.6918 -3.5675 3.8780 38 1 1.3082 -2.1739 4.7247 39 1 1.6034 -2.6357 2.9930 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:02 Heat of formation + Delta-G solvation = -101.683179 kcal Electronic energy + Delta-G solvation = -22390.556797 eV Core-core repulsion = 19106.299230 eV Total energy + Delta-G solvation = -3284.257566 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83163 -39.54322 -37.10294 -36.15148 -35.19239 -34.02999 -30.57180 -30.09207 -25.46112 -25.22607 -25.12496 -24.62399 -22.35296 -21.29789 -20.00381 -18.25647 -17.99787 -17.17894 -16.45824 -16.23451 -15.58646 -15.39696 -14.71276 -14.23511 -13.81541 -13.51336 -13.47471 -13.30151 -12.90308 -12.51272 -12.29142 -12.07349 -11.83071 -11.80817 -11.46891 -11.17800 -11.14410 -10.90589 -10.79937 -10.65735 -10.45191 -10.35959 -10.14327 -10.08108 -10.03880 -8.77195 -8.39077 -8.33331 -8.25123 -6.40824 -4.10497 2.22079 2.78053 3.39979 3.46475 3.49022 3.60850 3.67202 4.52328 4.81480 4.92826 4.99014 5.07520 5.15427 5.17984 5.30946 5.35033 5.46795 5.63701 5.68872 5.86812 5.97176 6.06487 6.16848 6.21266 6.28254 6.41807 6.45487 6.51203 6.52725 6.56701 6.63077 6.96758 7.17584 7.30084 7.75901 7.90778 8.11944 8.51441 8.83526 9.01910 9.57757 10.96800 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.007255 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.789281 B = 3858.493452 C = 4764.029643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.013 3.987 3 H 0.042 0.958 4 C -0.583 4.583 5 H 0.068 0.932 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 1.069 2.931 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.287 1.287 12 C 0.534 3.466 13 O -0.519 6.519 14 N -0.600 5.600 15 C 0.142 3.858 16 H 0.141 0.859 17 C -0.156 4.156 18 C 0.465 3.535 19 O -0.499 6.499 20 O -0.516 6.516 21 C 0.131 3.869 22 C -0.155 4.155 23 C -0.138 4.138 24 C -0.136 4.136 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.071 0.929 28 H 0.267 0.733 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.093 0.907 34 H 0.113 0.887 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.011 3.405 13.764 14.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.008 4.008 3 H 0.059 0.941 4 C -0.621 4.621 5 H 0.086 0.914 6 C -0.182 4.182 7 N -0.546 5.546 8 Si 0.898 3.102 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.213 1.213 12 C 0.326 3.674 13 O -0.393 6.393 14 N -0.335 5.335 15 C 0.035 3.965 16 H 0.158 0.842 17 C -0.214 4.214 18 C 0.304 3.696 19 O -0.385 6.385 20 O -0.327 6.327 21 C 0.027 3.973 22 C -0.193 4.193 23 C -0.176 4.176 24 C -0.174 4.174 25 H 0.065 0.935 26 H 0.036 0.964 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.265 0.735 33 H 0.111 0.889 34 H 0.131 0.869 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.461 2.559 11.895 12.176 hybrid contribution -0.650 0.016 2.346 2.435 sum -0.189 2.574 14.241 14.473 Atomic orbital electron populations 1.21915 0.97099 1.00652 0.99971 1.19048 0.93451 0.96865 0.91449 0.94071 1.21836 1.39182 1.10767 0.90299 0.91375 1.25814 0.94404 0.96654 1.01329 1.70859 1.41260 1.09372 1.33145 0.83526 0.76430 0.75099 0.75195 1.20857 1.21374 1.21343 1.21578 0.76287 0.86273 0.83287 1.90473 1.44788 1.18621 1.85413 1.48025 1.58477 1.17561 1.09390 1.20729 0.90022 0.86272 0.99481 0.84199 1.22125 0.98974 0.98128 1.02202 1.24167 0.83021 0.81061 0.81310 1.90725 1.67571 1.30738 1.49433 1.84553 1.46018 1.39708 1.62427 1.22406 0.94134 0.93007 0.87709 1.23529 0.95683 0.96893 1.03233 1.22609 0.97462 0.99037 0.98534 1.23207 0.95943 0.96281 1.02009 0.93539 0.96442 0.91059 0.92164 0.90110 0.90170 0.92061 0.73542 0.88858 0.86854 0.92521 0.91113 0.91345 0.92151 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.54 37.16 0.32 -2.79 16 2 C 0.01 0.31 1.39 -92.92 -0.13 0.19 16 3 H 0.04 0.99 6.42 -51.93 -0.33 0.65 16 4 C -0.58 -16.26 8.29 -34.44 -0.29 -16.55 16 5 H 0.07 2.02 6.86 -52.49 -0.36 1.66 16 6 C 0.02 0.60 5.19 -17.82 -0.09 0.51 16 7 N -0.91 -25.92 12.97 55.43 0.72 -25.20 16 8 Si 1.07 25.20 29.91 -169.99 -5.08 20.11 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.53 11.99 6.32 -10.99 -0.07 11.92 16 13 O -0.52 -12.92 11.30 5.55 0.06 -12.86 16 14 N -0.60 -10.87 2.38 -158.97 -0.38 -11.25 16 15 C 0.14 2.16 2.34 -69.08 -0.16 1.99 16 16 H 0.14 2.27 4.39 -51.93 -0.23 2.04 16 17 C -0.16 -1.85 9.12 37.16 0.34 -1.51 16 18 C 0.46 6.69 7.24 36.00 0.26 6.95 16 19 O -0.50 -8.49 15.58 -18.75 -0.29 -8.78 16 20 O -0.52 -5.59 13.33 -39.27 -0.52 -6.11 16 21 C 0.13 2.16 2.64 -67.12 -0.18 1.98 16 22 C -0.16 -2.54 7.35 -25.92 -0.19 -2.73 16 23 C -0.14 -2.04 8.08 -25.92 -0.21 -2.25 16 24 C -0.14 -2.33 6.91 -25.92 -0.18 -2.51 16 25 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.02 0.33 6.00 -51.93 -0.31 0.02 16 27 H 0.07 1.70 6.41 -51.93 -0.33 1.37 16 28 H 0.27 7.39 6.12 -40.82 -0.25 7.14 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.08 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.06 0.66 6.99 -51.93 -0.36 0.30 16 32 H 0.41 2.64 9.10 45.56 0.41 3.05 16 33 H 0.09 1.35 6.98 -51.93 -0.36 0.99 16 34 H 0.11 2.26 5.54 -51.92 -0.29 1.97 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.94 6.39 -51.93 -0.33 1.60 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -32.48 308.39 -5.93 -38.41 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -4.50 Total: 5.83 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.58 Total: -4.79 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.34 Total: -36.45 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: -0.75 Total: -27.75 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.08 Total: 20.11 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.48 -5.93 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.273 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds