Wall clock time and date at job start Mon Mar 30 2020 01:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47243 * 2 1 4 4 C 1.50700 * 109.46860 * 240.00344 * 2 1 3 5 5 H 1.08000 * 119.99856 * 245.52844 * 4 2 1 6 6 C 1.37879 * 120.00072 * 65.51969 * 4 2 1 7 7 N 1.31509 * 120.00332 * 8.67743 * 6 4 2 8 8 Si 1.86807 * 119.99789 * 188.94988 * 6 4 2 9 9 H 1.48503 * 109.46978 * 179.72764 * 8 6 4 10 10 H 1.48502 * 109.47041 * 299.72886 * 8 6 4 11 11 H 1.48499 * 109.46911 * 59.72680 * 8 6 4 12 12 C 1.50698 * 109.47372 * 120.00056 * 2 1 3 13 13 O 1.21287 * 119.99836 * 103.83169 * 12 2 1 14 14 N 1.34773 * 120.00266 * 283.83701 * 12 2 1 15 15 C 1.46502 * 119.99771 * 4.54382 * 14 12 2 16 16 H 1.08996 * 109.46952 * 359.97438 * 15 14 12 17 17 C 1.53006 * 109.46806 * 239.99811 * 15 14 12 18 18 C 1.50698 * 109.47080 * 120.00005 * 15 14 12 19 19 O 1.20824 * 120.00420 * 359.97438 * 18 15 14 20 20 O 1.34234 * 119.99581 * 179.97438 * 18 15 14 21 21 C 1.46497 * 120.00319 * 184.54274 * 14 12 2 22 22 C 1.53777 * 113.61360 * 41.81150 * 21 14 12 23 23 C 1.53779 * 87.08154 * 220.02099 * 22 21 14 24 24 C 1.53771 * 87.08295 * 25.43597 * 23 22 21 25 25 H 1.09000 * 109.46930 * 182.66648 * 1 2 3 26 26 H 1.09002 * 109.46650 * 302.65813 * 1 2 3 27 27 H 1.08996 * 109.47288 * 62.65723 * 1 2 3 28 28 H 0.97006 * 119.99621 * 0.28934 * 7 6 4 29 29 H 1.08999 * 109.46676 * 60.00089 * 17 15 14 30 30 H 1.08994 * 109.46690 * 179.97438 * 17 15 14 31 31 H 1.08996 * 109.47229 * 299.99664 * 17 15 14 32 32 H 0.96697 * 116.99722 * 180.02562 * 20 18 15 33 33 H 1.09003 * 112.85323 * 173.12265 * 21 14 12 34 34 H 1.09007 * 113.61654 * 334.56909 * 22 21 14 35 35 H 1.08998 * 113.61241 * 105.47401 * 22 21 14 36 36 H 1.09006 * 113.61635 * 270.88321 * 23 22 21 37 37 H 1.09007 * 113.61829 * 139.98357 * 23 22 21 38 38 H 1.09006 * 113.61560 * 220.02011 * 24 23 22 39 39 H 1.08995 * 113.69620 * 89.12441 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.5776 -1.6376 -1.1340 6 6 1.7956 -0.1766 -2.4796 7 7 1.2852 1.0301 -2.5931 8 14 2.1927 -1.1706 -4.0106 9 1 1.8424 -0.3806 -5.2183 10 1 3.6429 -1.4896 -4.0312 11 1 1.4085 -2.4316 -3.9992 12 6 2.0324 -0.7104 1.2304 13 8 2.4713 -1.8377 1.1431 14 7 1.9939 -0.0932 2.4279 15 6 1.3732 1.2281 2.5513 16 1 1.0023 1.5476 1.5774 17 6 2.4101 2.2334 3.0565 18 6 0.2270 1.1555 3.5269 19 8 -0.0440 0.1076 4.0638 20 8 -0.4929 2.2552 3.7995 21 6 2.5727 -0.7435 3.6062 22 6 3.9176 -1.4358 3.3293 23 6 3.4301 -2.5737 4.2416 24 6 1.9985 -2.1433 3.8816 25 1 -0.3633 -1.0266 0.0478 26 1 -0.3633 0.5546 0.8652 27 1 -0.3634 0.4720 -0.9128 28 1 1.0792 1.5463 -1.7981 29 1 3.2392 2.2859 2.3507 30 1 1.9485 3.2165 3.1478 31 1 2.7814 1.9141 4.0302 32 1 -1.2180 2.1595 4.4321 33 1 2.5855 -0.0965 4.4833 34 1 4.0486 -1.7355 2.2895 35 1 4.7768 -0.8953 3.7266 36 1 3.6787 -2.4275 5.2928 37 1 3.6918 -3.5675 3.8780 38 1 1.3082 -2.1739 4.7247 39 1 1.6034 -2.6357 2.9930 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211185.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:01 Heat of formation + Delta-G solvation = -123.138651 kcal Electronic energy + Delta-G solvation = -22391.487176 eV Core-core repulsion = 19106.299230 eV Total energy + Delta-G solvation = -3285.187945 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17631 -40.83783 -38.63262 -37.23150 -36.63668 -35.93064 -32.34222 -31.56023 -27.17038 -26.69509 -26.54211 -25.97021 -23.99511 -22.68549 -21.36571 -19.89696 -19.10288 -18.77350 -17.91230 -17.85668 -16.85470 -16.69798 -16.12058 -15.79945 -15.62105 -15.23755 -14.92656 -14.51245 -14.30095 -13.97646 -13.61109 -13.41899 -13.24957 -13.21511 -13.11422 -12.69259 -12.60217 -12.57907 -12.43149 -12.26340 -12.06096 -11.92405 -11.65606 -11.40453 -11.35118 -10.79531 -10.45116 -10.14853 -9.70812 -8.62074 -6.31721 1.09419 1.50429 1.54045 1.60079 1.80146 1.85140 2.25787 2.56271 3.16658 3.52869 3.68735 3.78068 3.87441 3.89940 3.99755 4.04953 4.23878 4.34752 4.43662 4.54945 4.66672 4.72506 4.73827 4.76078 4.91768 4.97266 5.04329 5.09992 5.14075 5.20668 5.36447 5.39891 5.53883 5.78718 5.90224 6.26128 6.34211 6.68858 6.94151 7.29561 7.43548 8.77985 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019033 B = 0.007255 C = 0.005876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.789281 B = 3858.493452 C = 4764.029643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.010 3.990 3 H 0.043 0.957 4 C -0.603 4.603 5 H 0.041 0.959 6 C -0.016 4.016 7 N -0.924 5.924 8 Si 1.107 2.893 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.280 1.280 12 C 0.531 3.469 13 O -0.554 6.554 14 N -0.593 5.593 15 C 0.129 3.871 16 H 0.128 0.872 17 C -0.148 4.148 18 C 0.475 3.525 19 O -0.528 6.528 20 O -0.501 6.501 21 C 0.131 3.869 22 C -0.158 4.158 23 C -0.123 4.123 24 C -0.141 4.141 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.055 0.945 28 H 0.265 0.735 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.429 0.571 33 H 0.125 0.875 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 4.742 15.637 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.011 4.011 3 H 0.061 0.939 4 C -0.641 4.641 5 H 0.059 0.941 6 C -0.216 4.216 7 N -0.560 5.560 8 Si 0.930 3.070 9 H -0.201 1.201 10 H -0.203 1.203 11 H -0.206 1.206 12 C 0.322 3.678 13 O -0.431 6.431 14 N -0.325 5.325 15 C 0.023 3.977 16 H 0.145 0.855 17 C -0.206 4.206 18 C 0.316 3.684 19 O -0.417 6.417 20 O -0.314 6.314 21 C 0.028 3.972 22 C -0.196 4.196 23 C -0.160 4.160 24 C -0.180 4.180 25 H 0.048 0.952 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.291 0.709 33 H 0.143 0.857 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.555 3.953 13.819 14.384 hybrid contribution -0.741 -0.326 1.839 2.009 sum -0.186 3.628 15.659 16.074 Atomic orbital electron populations 1.21709 0.96011 0.99819 1.00565 1.18968 0.94225 0.96552 0.91370 0.93895 1.22018 1.39461 1.10207 0.92396 0.94076 1.26934 0.93866 0.96949 1.03829 1.70934 1.42185 1.09821 1.33105 0.83038 0.76958 0.74299 0.72715 1.20067 1.20266 1.20635 1.21213 0.76381 0.85860 0.84361 1.90467 1.46427 1.19991 1.86230 1.47865 1.57781 1.18400 1.08500 1.20968 0.91662 0.85373 0.99687 0.85487 1.22115 0.97807 0.98186 1.02515 1.23755 0.82751 0.81208 0.80652 1.90733 1.68363 1.31906 1.50663 1.84483 1.46414 1.37675 1.62864 1.22662 0.93736 0.93052 0.87722 1.23401 0.96763 0.98039 1.01396 1.22618 0.95072 0.98199 1.00141 1.23102 0.97478 0.96897 1.00514 0.95236 0.93268 0.92605 0.92499 0.90805 0.87645 0.90493 0.70871 0.85736 0.90955 0.89810 0.87471 0.91949 0.91379 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.54 71.98 0.61 -5.00 16 2 C 0.01 0.50 1.39 -12.29 -0.02 0.48 16 3 H 0.04 2.09 6.42 -2.39 -0.02 2.08 16 4 C -0.60 -34.74 8.29 25.60 0.21 -34.52 16 5 H 0.04 2.55 6.86 -2.91 -0.02 2.53 16 6 C -0.02 -0.90 5.19 84.66 0.44 -0.46 16 7 N -0.92 -52.99 12.97 21.45 0.28 -52.72 16 8 Si 1.11 51.23 29.91 68.60 2.05 53.29 16 9 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 12 C 0.53 24.48 6.32 87.66 0.55 25.03 16 13 O -0.55 -28.96 11.30 -3.05 -0.03 -29.00 16 14 N -0.59 -21.14 2.38 -775.26 -1.85 -22.99 16 15 C 0.13 3.68 2.34 44.25 0.10 3.78 16 16 H 0.13 3.97 4.39 -2.39 -0.01 3.96 16 17 C -0.15 -3.06 9.12 71.98 0.66 -2.40 16 18 C 0.48 12.43 7.24 71.24 0.52 12.94 16 19 O -0.53 -16.87 15.58 21.97 0.34 -16.53 16 20 O -0.50 -9.02 13.33 -51.46 -0.69 -9.71 16 21 C 0.13 4.10 2.64 45.52 0.12 4.22 16 22 C -0.16 -4.99 7.35 31.12 0.23 -4.76 16 23 C -0.12 -3.41 8.08 31.12 0.25 -3.16 16 24 C -0.14 -4.77 6.91 31.12 0.22 -4.56 16 25 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.05 1.88 6.00 -2.39 -0.01 1.86 16 27 H 0.05 2.70 6.41 -2.39 -0.02 2.68 16 28 H 0.26 14.78 6.12 -92.70 -0.57 14.21 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 1.66 8.11 -2.39 -0.02 1.65 16 31 H 0.08 1.36 6.99 -2.39 -0.02 1.34 16 32 H 0.43 3.90 9.10 -74.06 -0.67 3.22 16 33 H 0.12 3.15 6.98 -2.39 -0.02 3.14 16 34 H 0.07 2.96 5.54 -2.38 -0.01 2.95 16 35 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 37 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 38 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.05 2.25 6.39 -2.39 -0.02 2.24 16 Total: -1.00 -72.59 308.39 4.61 -67.99 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.61 Total: 18.06 kcal Atomic # 6 Polarization: -12.29 SS G_CDS: 3.90 Total: -8.39 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.57 Total: -75.71 kcal Atomic # 8 Polarization: -54.85 SS G_CDS: -0.38 Total: -55.23 kcal Atomic # 14 Polarization: 51.23 SS G_CDS: 2.05 Total: 53.29 kcal Total: -72.59 4.61 -67.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211185.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.152 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds