Wall clock time and date at job start Mon Mar 30 2020 01:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47519 * 2 1 4 4 C 1.50703 * 109.46771 * 119.99697 * 2 1 3 5 5 H 1.08005 * 119.99695 * 119.99953 * 4 2 1 6 6 C 1.37874 * 120.00341 * 299.99647 * 4 2 1 7 7 N 1.31518 * 119.99833 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00127 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46887 * 60.00729 * 8 6 4 10 10 H 1.48503 * 109.47148 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47552 * 300.00625 * 8 6 4 12 12 C 1.50693 * 109.47355 * 239.99690 * 2 1 3 13 13 O 1.21289 * 120.00116 * 240.00341 * 12 2 1 14 14 N 1.34776 * 119.99854 * 60.00027 * 12 2 1 15 15 C 1.46501 * 120.00005 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47233 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47459 * 55.00457 * 16 15 14 18 18 C 1.52998 * 109.47228 * 175.00408 * 16 15 14 19 19 C 1.53003 * 109.47345 * 185.00194 * 18 16 15 20 20 C 1.53002 * 117.49851 * 243.62330 * 19 18 16 21 21 C 1.52994 * 117.50143 * 175.00016 * 19 18 16 22 22 C 1.50706 * 109.47215 * 295.00291 * 16 15 14 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 16 15 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 16 15 25 25 H 1.09006 * 109.47596 * 300.00603 * 1 2 3 26 26 H 1.09008 * 109.47027 * 60.00177 * 1 2 3 27 27 H 1.08995 * 109.47706 * 180.02562 * 1 2 3 28 28 H 0.96999 * 119.99944 * 179.97438 * 7 6 4 29 29 H 0.96994 * 120.00142 * 0.02562 * 14 12 2 30 30 H 1.08999 * 109.47155 * 60.00133 * 15 14 12 31 31 H 1.08999 * 109.47453 * 300.00569 * 15 14 12 32 32 H 1.09004 * 109.46935 * 304.99472 * 18 16 15 33 33 H 1.08997 * 109.47353 * 64.99799 * 18 16 15 34 34 H 1.08996 * 115.54770 * 29.32503 * 19 18 16 35 35 H 1.08999 * 117.49638 * 359.97438 * 20 19 18 36 36 H 1.08994 * 117.50069 * 145.01590 * 20 19 18 37 37 H 1.09004 * 117.50056 * 214.97773 * 21 19 18 38 38 H 1.08999 * 117.49938 * 359.96788 * 21 19 18 39 39 H 0.96700 * 117.00196 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1208 4.0083 10 1 1.8258 -0.4204 5.2205 11 1 1.8257 -2.5201 4.0079 12 6 2.0323 -0.7104 -1.2303 13 8 2.7296 -1.6966 -1.1190 14 7 1.7067 -0.2500 -2.4545 15 6 2.1956 -0.9403 -3.6506 16 6 1.6860 -0.2189 -4.8999 17 1 1.9744 0.8314 -4.8560 18 6 2.2965 -0.8636 -6.1458 19 6 1.8868 -0.0661 -7.3856 20 6 1.0221 -0.7766 -8.4288 21 6 2.4939 -0.4833 -8.7265 22 6 0.1841 -0.3252 -4.9640 23 8 -0.4170 -0.9177 -4.0994 24 8 -0.4858 0.2374 -5.9820 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7081 1.1610 3.4844 29 1 1.1494 0.5388 -2.5435 30 1 1.8327 -1.9681 -3.6508 31 1 3.2856 -0.9400 -3.6504 32 1 3.3830 -0.8662 -6.0583 33 1 1.9370 -1.8884 -6.2379 34 1 1.7082 0.9968 -7.2230 35 1 0.7455 -1.8124 -8.2321 36 1 0.2743 -0.1813 -8.9526 37 1 2.7144 0.3050 -9.4463 38 1 3.1856 -1.3257 -8.7255 39 1 -1.4481 0.1423 -5.9802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:51 Heat of formation + Delta-G solvation = -119.963497 kcal Electronic energy + Delta-G solvation = -20831.151114 eV Core-core repulsion = 17546.100854 eV Total energy + Delta-G solvation = -3285.050260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.60694 -38.62315 -37.81470 -36.25815 -34.86770 -33.64004 -32.24721 -30.26824 -26.60662 -25.04918 -24.65397 -22.57559 -22.33973 -20.83883 -20.52496 -19.17122 -18.14582 -17.00257 -16.34647 -16.05267 -15.89843 -15.27840 -14.96736 -14.53937 -14.28020 -14.15442 -13.68847 -12.95003 -12.88165 -12.53766 -12.37179 -12.15975 -11.80908 -11.74876 -11.49652 -11.39396 -11.25150 -10.92961 -10.67673 -10.60201 -10.54889 -10.43710 -10.15892 -10.07420 -9.89597 -8.90527 -8.53968 -8.35921 -8.24727 -5.96528 -3.99349 2.19284 2.94227 3.40749 3.42618 3.48254 3.55513 3.81887 3.88743 4.34452 4.49051 4.55951 4.64058 4.74475 4.90391 5.04027 5.28615 5.32985 5.36506 5.40872 5.53273 5.59128 5.67900 5.81671 5.88842 5.97405 6.05914 6.34924 6.47982 6.73716 6.95509 7.03239 7.13022 7.56776 7.84123 7.88104 8.05869 8.22317 8.52120 9.09211 9.33136 9.65738 11.11166 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042506 B = 0.003765 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.567550 B = 7434.795202 C = 7829.445367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.030 3.970 3 H 0.051 0.949 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.522 3.478 13 O -0.549 6.549 14 N -0.741 5.741 15 C 0.134 3.866 16 C -0.088 4.088 17 H 0.115 0.885 18 C -0.079 4.079 19 C -0.143 4.143 20 C -0.170 4.170 21 C -0.186 4.186 22 C 0.475 3.525 23 O -0.495 6.495 24 O -0.511 6.511 25 H 0.091 0.909 26 H 0.011 0.989 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.393 0.607 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.110 0.890 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.950 1.779 -22.249 22.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 H 0.069 0.931 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.425 6.425 14 N -0.395 5.395 15 C 0.009 3.991 16 C -0.107 4.107 17 H 0.133 0.867 18 C -0.117 4.117 19 C -0.161 4.161 20 C -0.207 4.207 21 C -0.223 4.223 22 C 0.316 3.684 23 O -0.381 6.381 24 O -0.323 6.323 25 H 0.110 0.890 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.226 0.774 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.248 1.021 -21.756 21.781 hybrid contribution -0.759 -0.050 0.689 1.027 sum -1.007 0.970 -21.067 21.113 Atomic orbital electron populations 1.21705 0.96456 0.99887 1.00684 1.18856 0.94190 0.96722 0.89366 0.93137 1.21126 1.30871 1.12751 0.89055 0.90842 1.24953 0.95170 0.95097 0.99083 1.69873 1.37177 1.23189 1.23532 0.86505 0.79233 0.79734 0.81639 1.20205 1.21428 1.20223 1.21911 0.78278 0.84222 0.84357 1.90521 1.38286 1.26870 1.86788 1.46147 1.55402 1.32460 1.05442 1.21073 0.98906 0.96726 0.82346 1.21413 0.87717 1.04026 0.97562 0.86745 1.21122 1.01440 0.98783 0.90348 1.22222 1.04271 1.00064 0.89544 1.22923 0.93509 1.01142 1.03170 1.22999 0.96594 1.03583 0.99117 1.23371 0.91400 0.75286 0.78329 1.90836 1.70035 1.38944 1.38242 1.84583 1.26554 1.72735 1.48411 0.89012 0.97013 0.95005 0.92986 0.77350 0.91252 0.90581 0.89400 0.90934 0.87236 0.89258 0.88938 0.88936 0.88908 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.87 37.15 0.33 -2.85 16 2 C 0.03 0.77 2.64 -92.93 -0.25 0.53 16 3 H 0.05 1.34 8.14 -51.93 -0.42 0.92 16 4 C -0.50 -14.66 8.37 -34.44 -0.29 -14.95 16 5 H 0.07 2.26 6.75 -52.48 -0.35 1.91 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.89 11.32 55.43 0.63 -25.26 16 8 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 12 C 0.52 12.48 7.15 -10.99 -0.08 12.40 16 13 O -0.55 -14.82 15.46 5.55 0.09 -14.73 16 14 N -0.74 -13.53 4.70 -60.30 -0.28 -13.81 16 15 C 0.13 1.97 4.63 -4.04 -0.02 1.95 16 16 C -0.09 -0.91 2.33 -91.77 -0.21 -1.13 16 17 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 18 C -0.08 -0.66 4.95 -26.73 -0.13 -0.79 16 19 C -0.14 -1.07 4.12 -90.62 -0.37 -1.45 16 20 C -0.17 -1.23 9.68 -26.73 -0.26 -1.49 16 21 C -0.19 -1.27 10.25 -26.73 -0.27 -1.54 16 22 C 0.48 5.56 7.28 36.01 0.26 5.82 16 23 O -0.49 -8.00 16.05 -18.75 -0.30 -8.30 16 24 O -0.51 -4.27 11.30 -39.24 -0.44 -4.72 16 25 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 26 H 0.01 0.24 7.57 -51.92 -0.39 -0.16 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 29 H 0.39 6.49 7.57 -40.82 -0.31 6.18 16 30 H 0.07 1.15 7.96 -51.93 -0.41 0.74 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.63 7.87 -51.93 -0.41 0.22 16 34 H 0.11 0.83 8.02 -51.93 -0.42 0.41 16 35 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.40 2.07 9.10 45.56 0.41 2.49 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -34.77 327.64 -6.91 -41.68 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.13 Total: 4.82 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.39 Total: -1.95 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.34 Total: -39.07 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.66 Total: -27.75 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.77 -6.91 -41.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.282 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds