Wall clock time and date at job start Mon Mar 30 2020 01:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47519 * 2 1 4 4 C 1.50703 * 109.46771 * 119.99697 * 2 1 3 5 5 H 1.08005 * 119.99695 * 119.99953 * 4 2 1 6 6 C 1.37874 * 120.00341 * 299.99647 * 4 2 1 7 7 N 1.31518 * 119.99833 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00127 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46887 * 60.00729 * 8 6 4 10 10 H 1.48503 * 109.47148 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47552 * 300.00625 * 8 6 4 12 12 C 1.50693 * 109.47355 * 239.99690 * 2 1 3 13 13 O 1.21289 * 120.00116 * 240.00341 * 12 2 1 14 14 N 1.34776 * 119.99854 * 60.00027 * 12 2 1 15 15 C 1.46501 * 120.00005 * 179.97438 * 14 12 2 16 16 C 1.52996 * 109.47233 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47459 * 55.00457 * 16 15 14 18 18 C 1.52998 * 109.47228 * 175.00408 * 16 15 14 19 19 C 1.53003 * 109.47345 * 185.00194 * 18 16 15 20 20 C 1.53002 * 117.49851 * 243.62330 * 19 18 16 21 21 C 1.52994 * 117.50143 * 175.00016 * 19 18 16 22 22 C 1.50706 * 109.47215 * 295.00291 * 16 15 14 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 16 15 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 16 15 25 25 H 1.09006 * 109.47596 * 300.00603 * 1 2 3 26 26 H 1.09008 * 109.47027 * 60.00177 * 1 2 3 27 27 H 1.08995 * 109.47706 * 180.02562 * 1 2 3 28 28 H 0.96999 * 119.99944 * 179.97438 * 7 6 4 29 29 H 0.96994 * 120.00142 * 0.02562 * 14 12 2 30 30 H 1.08999 * 109.47155 * 60.00133 * 15 14 12 31 31 H 1.08999 * 109.47453 * 300.00569 * 15 14 12 32 32 H 1.09004 * 109.46935 * 304.99472 * 18 16 15 33 33 H 1.08997 * 109.47353 * 64.99799 * 18 16 15 34 34 H 1.08996 * 115.54770 * 29.32503 * 19 18 16 35 35 H 1.08999 * 117.49638 * 359.97438 * 20 19 18 36 36 H 1.08994 * 117.50069 * 145.01590 * 20 19 18 37 37 H 1.09004 * 117.50056 * 214.97773 * 21 19 18 38 38 H 1.08999 * 117.49938 * 359.96788 * 21 19 18 39 39 H 0.96700 * 117.00196 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.8062 -1.1208 4.0083 10 1 1.8258 -0.4204 5.2205 11 1 1.8257 -2.5201 4.0079 12 6 2.0323 -0.7104 -1.2303 13 8 2.7296 -1.6966 -1.1190 14 7 1.7067 -0.2500 -2.4545 15 6 2.1956 -0.9403 -3.6506 16 6 1.6860 -0.2189 -4.8999 17 1 1.9744 0.8314 -4.8560 18 6 2.2965 -0.8636 -6.1458 19 6 1.8868 -0.0661 -7.3856 20 6 1.0221 -0.7766 -8.4288 21 6 2.4939 -0.4833 -8.7265 22 6 0.1841 -0.3252 -4.9640 23 8 -0.4170 -0.9177 -4.0994 24 8 -0.4858 0.2374 -5.9820 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 0.7081 1.1610 3.4844 29 1 1.1494 0.5388 -2.5435 30 1 1.8327 -1.9681 -3.6508 31 1 3.2856 -0.9400 -3.6504 32 1 3.3830 -0.8662 -6.0583 33 1 1.9370 -1.8884 -6.2379 34 1 1.7082 0.9968 -7.2230 35 1 0.7455 -1.8124 -8.2321 36 1 0.2743 -0.1813 -8.9526 37 1 2.7144 0.3050 -9.4463 38 1 3.1856 -1.3257 -8.7255 39 1 -1.4481 0.1423 -5.9802 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:51 Heat of formation + Delta-G solvation = -143.985103 kcal Electronic energy + Delta-G solvation = -20832.192769 eV Core-core repulsion = 17546.100854 eV Total energy + Delta-G solvation = -3286.091915 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.59618 -40.36191 -38.47000 -37.20157 -36.11804 -35.74249 -33.61865 -32.22002 -27.72623 -27.17666 -25.69217 -24.15392 -23.09818 -21.73276 -21.48323 -20.75414 -19.03812 -18.38440 -17.94341 -17.68828 -17.15842 -16.49524 -16.24949 -16.03027 -15.78360 -15.16417 -14.72564 -14.63436 -14.48784 -13.79791 -13.49275 -13.39957 -13.25059 -12.96947 -12.68969 -12.67848 -12.60181 -12.38747 -12.26798 -12.20616 -12.04009 -11.97821 -11.48613 -11.07345 -11.03213 -10.67695 -10.60192 -10.30201 -9.95533 -8.14890 -6.25620 1.27265 1.40945 1.43351 1.51720 1.93694 2.13745 2.33974 2.51800 3.02978 3.14421 3.41759 3.73282 3.97635 4.11739 4.19114 4.34152 4.39181 4.46252 4.61337 4.67583 4.71777 4.81481 4.90719 4.93771 4.98236 5.00780 5.02594 5.16015 5.37697 5.47692 5.48338 5.57078 5.70290 5.73739 5.91333 6.19853 6.70920 6.84945 7.07991 7.39645 7.54096 8.91135 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.042506 B = 0.003765 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.567550 B = 7434.795202 C = 7829.445367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.024 3.976 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.588 6.588 14 N -0.720 5.720 15 C 0.131 3.869 16 C -0.077 4.077 17 H 0.140 0.860 18 C -0.074 4.074 19 C -0.145 4.145 20 C -0.176 4.176 21 C -0.181 4.181 22 C 0.483 3.517 23 O -0.546 6.546 24 O -0.495 6.495 25 H 0.072 0.928 26 H 0.043 0.957 27 H 0.016 0.984 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 2.701 -23.709 23.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.003 3.997 3 H 0.062 0.938 4 C -0.569 4.569 5 H 0.068 0.932 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.311 3.689 13 O -0.468 6.468 14 N -0.373 5.373 15 C 0.008 3.992 16 C -0.096 4.096 17 H 0.158 0.842 18 C -0.112 4.112 19 C -0.163 4.163 20 C -0.213 4.213 21 C -0.218 4.218 22 C 0.326 3.674 23 O -0.436 6.436 24 O -0.308 6.308 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.066 0.934 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.133 0.867 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -0.203 1.994 -23.288 23.374 hybrid contribution -0.824 -0.298 1.031 1.353 sum -1.028 1.696 -22.257 22.345 Atomic orbital electron populations 1.21504 0.95506 0.98965 1.01255 1.18797 0.94914 0.96130 0.89862 0.93826 1.21279 1.31710 1.12804 0.91147 0.93243 1.25635 0.95158 0.95766 1.01515 1.69948 1.37161 1.23657 1.24406 0.85615 0.78793 0.78606 0.78641 1.19869 1.19825 1.20328 1.21475 0.78167 0.83692 0.85581 1.90494 1.40235 1.28492 1.87559 1.45871 1.54137 1.32258 1.04986 1.21247 0.99507 0.95943 0.82533 1.21355 0.87127 1.05002 0.96154 0.84212 1.21106 1.02085 0.98371 0.89588 1.22176 1.04775 1.00093 0.89272 1.22964 0.94067 1.00947 1.03274 1.23065 0.96254 1.03828 0.98637 1.23529 0.91830 0.74111 0.77881 1.90834 1.71082 1.41390 1.40322 1.84538 1.28049 1.71517 1.46667 0.90924 0.93801 0.96515 0.92555 0.76079 0.93360 0.89610 0.88062 0.91556 0.86717 0.89813 0.88367 0.88030 0.88692 0.71778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.64 8.87 71.98 0.64 -5.00 16 2 C 0.02 1.27 2.64 -12.29 -0.03 1.24 16 3 H 0.04 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.53 -31.89 8.37 25.60 0.21 -31.68 16 5 H 0.05 3.15 6.75 -2.91 -0.02 3.13 16 6 C 0.02 1.05 5.30 84.65 0.45 1.50 16 7 N -0.91 -52.59 11.32 21.45 0.24 -52.35 16 8 Si 0.96 45.99 29.54 68.60 2.03 48.02 16 9 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 12 C 0.52 25.24 7.15 87.66 0.63 25.87 16 13 O -0.59 -32.59 15.46 -3.06 -0.05 -32.64 16 14 N -0.72 -25.88 4.70 -463.07 -2.18 -28.05 16 15 C 0.13 3.75 4.63 86.38 0.40 4.14 16 16 C -0.08 -1.43 2.33 -11.54 -0.03 -1.46 16 17 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 18 C -0.07 -1.05 4.95 30.59 0.15 -0.90 16 19 C -0.15 -1.77 4.12 -10.79 -0.04 -1.82 16 20 C -0.18 -2.14 9.68 30.59 0.30 -1.84 16 21 C -0.18 -2.00 10.25 30.59 0.31 -1.68 16 22 C 0.48 10.43 7.28 71.24 0.52 10.95 16 23 O -0.55 -17.26 16.05 21.97 0.35 -16.91 16 24 O -0.50 -6.96 11.30 -51.35 -0.58 -7.54 16 25 H 0.07 3.87 6.07 -2.38 -0.01 3.86 16 26 H 0.04 1.82 7.57 -2.38 -0.02 1.80 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.40 12.76 7.57 -92.71 -0.70 12.06 16 30 H 0.05 1.61 7.96 -2.39 -0.02 1.59 16 31 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 1.05 7.87 -2.39 -0.02 1.03 16 34 H 0.11 1.33 8.02 -2.39 -0.02 1.31 16 35 H 0.08 1.12 8.03 -2.39 -0.02 1.10 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.42 3.24 9.10 -74.06 -0.67 2.56 16 Total: -1.00 -75.97 327.64 3.01 -72.96 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -0.31 Total: 17.20 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 3.50 Total: -0.68 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -1.93 Total: -80.40 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -0.27 Total: -57.09 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -75.97 3.01 -72.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.030 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds