Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47202 * 304.99871 * 16 15 14 18 18 C 1.53002 * 109.47424 * 185.00104 * 16 15 14 19 19 C 1.52993 * 109.47270 * 174.99771 * 18 16 15 20 20 C 1.53005 * 117.49956 * 243.62342 * 19 18 16 21 21 C 1.53006 * 117.49747 * 174.99975 * 19 18 16 22 22 C 1.50698 * 109.47259 * 65.00133 * 16 15 14 23 23 O 1.20819 * 120.00032 * 359.97438 * 22 16 15 24 24 O 1.34230 * 120.00017 * 180.02562 * 22 16 15 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 31 31 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 32 32 H 1.08998 * 109.47049 * 295.00412 * 18 16 15 33 33 H 1.09003 * 109.46961 * 54.99619 * 18 16 15 34 34 H 1.08997 * 115.54923 * 29.32937 * 19 18 16 35 35 H 1.08999 * 117.49641 * 359.97438 * 20 19 18 36 36 H 1.08998 * 117.50159 * 145.02338 * 20 19 18 37 37 H 1.09002 * 117.49876 * 214.97608 * 21 19 18 38 38 H 1.09002 * 117.49975 * 359.97438 * 21 19 18 39 39 H 0.96703 * 117.00094 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6859 -0.2183 -4.9000 17 1 0.5995 -0.1402 -4.8567 18 6 2.0911 -1.0081 -6.1462 19 6 1.4765 -0.3553 -7.3859 20 6 0.4601 -1.1736 -8.1848 21 6 1.8606 -0.9300 -8.7509 22 6 2.2868 1.1622 -4.9629 23 8 3.0444 1.5313 -4.0972 24 8 1.9794 1.9823 -5.9802 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1611 3.4845 29 1 1.1493 0.5391 -2.5436 30 1 3.2855 -0.9395 -3.6507 31 1 1.8325 -1.9678 -3.6511 32 1 3.1772 -1.0106 -6.2375 33 1 1.7314 -2.0334 -6.0594 34 1 1.3163 0.7209 -7.3199 35 1 0.2296 -2.1772 -7.8275 36 1 -0.3691 -0.6359 -8.6446 37 1 1.9527 -0.2321 -9.5830 38 1 2.5515 -1.7730 -8.7657 39 1 2.3892 2.8582 -5.9772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -120.137123 kcal Electronic energy + Delta-G solvation = -20738.857766 eV Core-core repulsion = 17453.799977 eV Total energy + Delta-G solvation = -3285.057789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68130 -38.63886 -37.82342 -36.35107 -34.88433 -33.65084 -32.25512 -30.28550 -26.60610 -25.07304 -24.68097 -22.62771 -22.36066 -20.89241 -20.48571 -19.18591 -18.19976 -17.09055 -16.43550 -16.09778 -15.87674 -15.24369 -14.98518 -14.52367 -14.32166 -14.12482 -13.80679 -13.03165 -12.84635 -12.54427 -12.40963 -12.22530 -11.79336 -11.68382 -11.62404 -11.38807 -11.23073 -10.94737 -10.68557 -10.63657 -10.51536 -10.41361 -10.18275 -10.14676 -9.89935 -8.91891 -8.54628 -8.35850 -8.25555 -5.96948 -3.99666 2.13901 2.86232 3.40660 3.42454 3.48140 3.54103 3.83061 3.86065 4.33914 4.49748 4.57400 4.61844 4.70567 4.92186 5.05176 5.24158 5.34809 5.36207 5.39237 5.52189 5.60042 5.66179 5.80182 5.87072 5.98168 6.21050 6.32809 6.42333 6.67112 6.88990 6.98881 7.12334 7.55264 7.81543 7.81807 8.05316 8.21136 8.51742 9.09003 9.32889 9.65420 11.10844 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037249 B = 0.003732 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.514151 B = 7500.650477 C = 7717.137966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.548 6.548 14 N -0.741 5.741 15 C 0.134 3.866 16 C -0.088 4.088 17 H 0.116 0.884 18 C -0.079 4.079 19 C -0.162 4.162 20 C -0.181 4.181 21 C -0.182 4.182 22 C 0.476 3.524 23 O -0.493 6.493 24 O -0.515 6.515 25 H 0.093 0.907 26 H 0.010 0.990 27 H 0.031 0.969 28 H 0.260 0.740 29 H 0.393 0.607 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 0.957 -22.121 22.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.729 3.271 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.425 6.425 14 N -0.395 5.395 15 C 0.009 3.991 16 C -0.107 4.107 17 H 0.134 0.866 18 C -0.116 4.116 19 C -0.180 4.180 20 C -0.218 4.218 21 C -0.219 4.219 22 C 0.317 3.683 23 O -0.378 6.378 24 O -0.328 6.328 25 H 0.111 0.889 26 H 0.029 0.971 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.227 0.773 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.717 0.044 -21.624 21.692 hybrid contribution 0.274 0.641 0.672 0.969 sum -1.443 0.685 -20.952 21.012 Atomic orbital electron populations 1.21735 0.96636 0.99727 1.00818 1.18858 0.94069 0.96913 0.89378 0.93005 1.21123 1.30870 1.12754 0.89044 0.90833 1.24957 0.95179 0.95090 0.99089 1.69870 1.37238 1.23129 1.23537 0.86502 0.79292 0.79676 0.81627 1.21427 1.20212 1.20211 1.21898 0.78332 0.84151 0.84345 1.90519 1.38031 1.27118 1.86784 1.46151 1.55445 1.32435 1.05441 1.21075 1.00056 0.95603 0.82328 1.21440 1.02942 0.88684 0.97638 0.86593 1.21100 1.01305 0.98926 0.90310 1.22717 1.03143 1.00780 0.91356 1.23048 0.92920 1.01377 1.04477 1.22942 0.98583 1.03464 0.96927 1.23438 0.79087 0.87520 0.78287 1.90832 1.33293 1.75651 1.38041 1.84533 1.69826 1.30020 1.48464 0.88888 0.97080 0.94992 0.92978 0.77341 0.91198 0.90583 0.90657 0.89691 0.85213 0.88784 0.88927 0.88959 0.88940 0.73597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.09 8.87 37.16 0.33 -2.76 16 2 C 0.03 0.75 2.64 -92.93 -0.25 0.51 16 3 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 4 C -0.50 -14.65 8.37 -34.44 -0.29 -14.94 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.52 12.49 7.15 -10.99 -0.08 12.41 16 13 O -0.55 -14.81 15.46 5.56 0.09 -14.72 16 14 N -0.74 -13.54 4.70 -60.30 -0.28 -13.83 16 15 C 0.13 1.97 4.63 -4.04 -0.02 1.96 16 16 C -0.09 -0.92 2.37 -91.77 -0.22 -1.14 16 17 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 18 C -0.08 -0.67 4.95 -26.73 -0.13 -0.80 16 19 C -0.16 -1.27 5.44 -90.62 -0.49 -1.76 16 20 C -0.18 -1.29 10.18 -26.72 -0.27 -1.56 16 21 C -0.18 -1.29 10.25 -26.72 -0.27 -1.56 16 22 C 0.48 5.54 7.28 36.00 0.26 5.80 16 23 O -0.49 -7.90 16.05 -18.74 -0.30 -8.20 16 24 O -0.52 -4.22 10.51 -39.26 -0.41 -4.64 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 26 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 27 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.39 6.49 7.57 -40.82 -0.31 6.18 16 30 H 0.07 1.16 7.95 -51.93 -0.41 0.74 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.65 7.88 -51.93 -0.41 0.24 16 34 H 0.13 1.06 5.24 -51.93 -0.27 0.79 16 35 H 0.09 0.64 8.03 -51.93 -0.42 0.22 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.40 1.92 9.10 45.56 0.41 2.34 16 LS Contribution 325.93 15.07 4.91 4.91 Total: -1.00 -34.69 325.93 -6.90 -41.59 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -4.99 Total: 5.11 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -1.52 Total: -2.31 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.34 Total: -39.07 kcal Atomic # 8 Polarization: -26.94 SS G_CDS: -0.63 Total: -27.56 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.69 -6.90 -41.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.549 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds