Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47202 * 304.99871 * 16 15 14 18 18 C 1.53002 * 109.47424 * 185.00104 * 16 15 14 19 19 C 1.52993 * 109.47270 * 174.99771 * 18 16 15 20 20 C 1.53005 * 117.49956 * 243.62342 * 19 18 16 21 21 C 1.53006 * 117.49747 * 174.99975 * 19 18 16 22 22 C 1.50698 * 109.47259 * 65.00133 * 16 15 14 23 23 O 1.20819 * 120.00032 * 359.97438 * 22 16 15 24 24 O 1.34230 * 120.00017 * 180.02562 * 22 16 15 25 25 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 26 26 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 27 27 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 0.97006 * 120.00251 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.47081 * 299.99975 * 15 14 12 31 31 H 1.09000 * 109.47237 * 60.00287 * 15 14 12 32 32 H 1.08998 * 109.47049 * 295.00412 * 18 16 15 33 33 H 1.09003 * 109.46961 * 54.99619 * 18 16 15 34 34 H 1.08997 * 115.54923 * 29.32937 * 19 18 16 35 35 H 1.08999 * 117.49641 * 359.97438 * 20 19 18 36 36 H 1.08998 * 117.50159 * 145.02338 * 20 19 18 37 37 H 1.09002 * 117.49876 * 214.97608 * 21 19 18 38 38 H 1.09002 * 117.49975 * 359.97438 * 21 19 18 39 39 H 0.96703 * 117.00094 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 2.1955 -0.9400 -3.6508 16 6 1.6859 -0.2183 -4.9000 17 1 0.5995 -0.1402 -4.8567 18 6 2.0911 -1.0081 -6.1462 19 6 1.4765 -0.3553 -7.3859 20 6 0.4601 -1.1736 -8.1848 21 6 1.8606 -0.9300 -8.7509 22 6 2.2868 1.1622 -4.9629 23 8 3.0444 1.5313 -4.0972 24 8 1.9794 1.9823 -5.9802 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7089 1.1611 3.4845 29 1 1.1493 0.5391 -2.5436 30 1 3.2855 -0.9395 -3.6507 31 1 1.8325 -1.9678 -3.6511 32 1 3.1772 -1.0106 -6.2375 33 1 1.7314 -2.0334 -6.0594 34 1 1.3163 0.7209 -7.3199 35 1 0.2296 -2.1772 -7.8275 36 1 -0.3691 -0.6359 -8.6446 37 1 1.9527 -0.2321 -9.5830 38 1 2.5515 -1.7730 -8.7657 39 1 2.3892 2.8582 -5.9772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592211435.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -144.133576 kcal Electronic energy + Delta-G solvation = -20739.898330 eV Core-core repulsion = 17453.799977 eV Total energy + Delta-G solvation = -3286.098354 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66122 -40.37890 -38.48349 -37.28745 -36.13674 -35.74054 -33.62681 -32.21992 -27.73231 -27.16336 -25.70578 -24.15855 -23.13684 -21.80535 -21.45471 -20.75439 -19.08970 -18.37327 -18.07812 -17.63998 -17.21056 -16.56633 -16.22085 -15.98014 -15.89620 -15.07460 -14.86394 -14.62017 -14.43978 -13.82592 -13.68172 -13.30944 -13.26681 -12.96007 -12.70846 -12.64292 -12.55930 -12.52091 -12.25244 -12.18930 -12.01422 -11.94552 -11.47992 -11.06026 -11.01049 -10.73543 -10.59922 -10.30276 -9.95878 -8.14898 -6.25744 1.21897 1.40752 1.43111 1.51525 1.93894 2.06948 2.33336 2.51618 3.00389 3.14350 3.39211 3.75257 3.94382 4.08497 4.19638 4.32869 4.38684 4.42429 4.61453 4.73936 4.74435 4.79064 4.88642 4.93618 4.94989 5.01338 5.05386 5.14969 5.36873 5.49416 5.56596 5.59748 5.65655 5.74840 5.94286 6.21138 6.70695 6.84953 7.02467 7.39552 7.53941 8.91060 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.037249 B = 0.003732 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.514151 B = 7500.650477 C = 7717.137966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.033 0.967 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.018 3.982 7 N -0.913 5.913 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.522 3.478 13 O -0.588 6.588 14 N -0.720 5.720 15 C 0.131 3.869 16 C -0.077 4.077 17 H 0.140 0.860 18 C -0.073 4.073 19 C -0.168 4.168 20 C -0.179 4.179 21 C -0.183 4.183 22 C 0.484 3.516 23 O -0.544 6.544 24 O -0.499 6.499 25 H 0.070 0.930 26 H 0.050 0.950 27 H 0.027 0.973 28 H 0.265 0.735 29 H 0.404 0.596 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 1.011 -23.635 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 H 0.051 0.949 4 C -0.570 4.570 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.311 3.689 13 O -0.468 6.468 14 N -0.373 5.373 15 C 0.008 3.992 16 C -0.096 4.096 17 H 0.157 0.843 18 C -0.111 4.111 19 C -0.185 4.185 20 C -0.215 4.215 21 C -0.220 4.220 22 C 0.327 3.673 23 O -0.434 6.434 24 O -0.313 6.313 25 H 0.089 0.911 26 H 0.069 0.931 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.239 0.761 30 H 0.068 0.932 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.146 0.854 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.113 0.887 39 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges -2.814 0.146 -23.210 23.380 hybrid contribution 0.601 0.694 1.026 1.377 sum -2.213 0.840 -22.183 22.309 Atomic orbital electron populations 1.21538 0.94736 0.99637 1.01633 1.18801 0.95635 0.95572 0.89851 0.94943 1.21283 1.31704 1.12804 0.91168 0.93250 1.25642 0.95176 0.95767 1.01527 1.69955 1.37246 1.23600 1.24384 0.85612 0.78578 0.78824 0.78628 1.19829 1.19848 1.20329 1.21466 0.78177 0.83654 0.85561 1.90491 1.39890 1.28830 1.87557 1.45874 1.54180 1.32242 1.04977 1.21247 0.99029 0.96472 0.82490 1.21369 1.03912 0.88043 0.96249 0.84266 1.21079 1.01192 0.99284 0.89521 1.22624 1.03993 1.00678 0.91247 1.23127 0.93017 1.01486 1.03917 1.23018 0.98780 1.03587 0.96580 1.23579 0.77902 0.87961 0.77854 1.90832 1.35717 1.76723 1.40124 1.84491 1.69266 1.30891 1.46666 0.91141 0.93085 0.95378 0.92572 0.76074 0.93226 0.89630 0.91118 0.88465 0.85409 0.88371 0.88295 0.88349 0.88733 0.71543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.87 71.98 0.64 -4.85 16 2 C 0.02 1.20 2.64 -12.29 -0.03 1.16 16 3 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 4 C -0.53 -31.96 8.37 25.60 0.21 -31.74 16 5 H 0.05 3.15 6.75 -2.91 -0.02 3.13 16 6 C 0.02 1.03 5.30 84.66 0.45 1.48 16 7 N -0.91 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.96 46.05 29.54 68.60 2.03 48.08 16 9 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 12 C 0.52 25.29 7.15 87.66 0.63 25.92 16 13 O -0.59 -32.59 15.46 -3.03 -0.05 -32.64 16 14 N -0.72 -25.91 4.70 -463.07 -2.18 -28.09 16 15 C 0.13 3.75 4.63 86.38 0.40 4.15 16 16 C -0.08 -1.44 2.37 -11.54 -0.03 -1.47 16 17 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 18 C -0.07 -1.07 4.95 30.59 0.15 -0.92 16 19 C -0.17 -2.16 5.44 -10.79 -0.06 -2.22 16 20 C -0.18 -2.02 10.18 30.60 0.31 -1.71 16 21 C -0.18 -2.13 10.25 30.60 0.31 -1.82 16 22 C 0.48 10.48 7.28 71.24 0.52 11.00 16 23 O -0.54 -17.24 16.05 21.98 0.35 -16.89 16 24 O -0.50 -6.93 10.51 -51.41 -0.54 -7.47 16 25 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 26 H 0.05 1.91 7.57 -2.38 -0.02 1.89 16 27 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 29 H 0.40 12.77 7.57 -92.70 -0.70 12.07 16 30 H 0.05 1.65 7.95 -2.39 -0.02 1.63 16 31 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.22 7.88 -2.39 -0.02 1.20 16 34 H 0.13 1.71 5.24 -2.39 -0.01 1.70 16 35 H 0.10 1.04 8.03 -2.39 -0.02 1.02 16 36 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.42 3.00 9.10 -74.05 -0.67 2.32 16 Total: -1.00 -76.23 325.93 3.06 -73.17 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -0.30 Total: 17.34 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 3.50 Total: -1.03 kcal Atomic # 7 Polarization: -78.63 SS G_CDS: -1.93 Total: -80.57 kcal Atomic # 8 Polarization: -56.76 SS G_CDS: -0.23 Total: -57.00 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -76.23 3.06 -73.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211435.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.960 kcal (2) G-P(sol) polarization free energy of solvation -76.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds