Wall clock time and date at job start Mon Mar 30 2020 01:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46884 * 2 1 4 4 C 1.53000 * 109.47503 * 119.99981 * 2 1 3 5 5 C 1.50697 * 109.46988 * 294.93096 * 4 2 1 6 6 O 1.21292 * 120.00210 * 353.07806 * 5 4 2 7 7 N 1.34775 * 119.99857 * 173.08377 * 5 4 2 8 8 C 1.37096 * 120.00511 * 355.46706 * 7 5 4 9 9 H 1.08008 * 119.99515 * 324.44935 * 8 7 5 10 10 C 1.38949 * 120.00452 * 144.44280 * 8 7 5 11 11 N 1.31408 * 120.00079 * 159.05833 * 10 8 7 12 12 Si 1.86798 * 119.99782 * 339.05662 * 10 8 7 13 13 H 1.48505 * 109.47053 * 93.40224 * 12 10 8 14 14 H 1.48505 * 109.47133 * 213.39906 * 12 10 8 15 15 H 1.48496 * 109.47533 * 333.40417 * 12 10 8 16 16 C 1.46505 * 119.99943 * 175.46635 * 7 5 4 17 17 C 1.53008 * 109.46667 * 90.00220 * 16 7 5 18 18 C 1.50700 * 109.46720 * 180.02562 * 17 16 7 19 19 O 1.20829 * 120.00318 * 359.97438 * 18 17 16 20 20 O 1.34234 * 120.00011 * 179.97438 * 18 17 16 21 21 C 1.53005 * 109.47545 * 240.00218 * 2 1 3 22 22 C 1.52999 * 117.50241 * 174.00215 * 21 2 1 23 23 C 1.53001 * 60.03073 * 252.49993 * 22 21 2 24 24 H 1.08998 * 109.47153 * 299.99997 * 1 2 3 25 25 H 1.08997 * 109.46964 * 60.00213 * 1 2 3 26 26 H 1.09003 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47052 * 54.92538 * 4 2 1 28 28 H 1.08997 * 109.47612 * 174.92537 * 4 2 1 29 29 H 0.96999 * 120.00390 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47375 * 209.99482 * 16 7 5 31 31 H 1.08999 * 109.47332 * 330.00378 * 16 7 5 32 32 H 1.08999 * 109.47142 * 299.99658 * 17 16 7 33 33 H 1.08990 * 109.47333 * 59.99970 * 17 16 7 34 34 H 0.96700 * 117.00159 * 179.97438 * 20 18 17 35 35 H 1.09000 * 115.55549 * 319.69848 * 21 2 1 36 36 H 1.09005 * 117.49727 * 359.97438 * 22 21 2 37 37 H 1.08994 * 117.49972 * 144.99536 * 22 21 2 38 38 H 1.09004 * 117.49493 * 107.50450 * 23 22 21 39 39 H 1.09000 * 117.49746 * 252.51684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6429 0.0580 2.4764 6 8 1.1254 1.1489 2.3611 7 7 1.8628 -0.4573 3.7022 8 6 2.3617 -1.7276 3.8325 9 1 2.0682 -2.4973 3.1339 10 6 3.2449 -2.0250 4.8632 11 7 3.4058 -3.2699 5.2520 12 14 4.2036 -0.6550 5.6960 13 1 3.4621 -0.1907 6.8960 14 1 5.5382 -1.1623 6.1044 15 1 4.3725 0.4770 4.7499 16 6 1.5688 0.3401 4.8956 17 6 0.1231 0.0921 5.3311 18 6 -0.1795 0.9128 6.5582 19 8 0.6736 1.6228 7.0358 20 8 -1.3969 0.8551 7.1208 21 6 2.0401 -0.7212 -1.2493 22 6 3.5481 -0.7065 -1.5073 23 6 2.6155 0.1391 -2.3770 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6044 -1.7193 1.2958 28 1 3.1262 -0.8006 1.2049 29 1 4.0220 -3.4774 5.9717 30 1 2.2451 0.0524 5.7005 31 1 1.7035 1.3975 4.6683 32 1 -0.5532 0.3797 4.5262 33 1 -0.0116 -0.9653 5.5584 34 1 -1.5436 1.3991 7.9067 35 1 1.4898 -1.6187 -1.5317 36 1 4.1768 -0.1825 -0.7873 37 1 3.9901 -1.5944 -1.9592 38 1 2.6309 1.2189 -2.2289 39 1 2.4438 -0.1928 -3.4009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592225707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:00 Heat of formation + Delta-G solvation = -108.240236 kcal Electronic energy + Delta-G solvation = -21270.400939 eV Core-core repulsion = 17985.859037 eV Total energy + Delta-G solvation = -3284.541902 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.02554 -39.14952 -37.53654 -35.96263 -35.17543 -32.75196 -32.18944 -30.90091 -27.39600 -25.08474 -24.44314 -22.81402 -22.11578 -20.85312 -19.58532 -18.87265 -17.91296 -16.84533 -16.38197 -16.29228 -15.59683 -15.42793 -14.87454 -14.48414 -14.39955 -13.66295 -13.25138 -13.13093 -12.67549 -12.53388 -12.51569 -12.28238 -11.89989 -11.42685 -11.37381 -11.30707 -11.19132 -10.92019 -10.80321 -10.68045 -10.32126 -10.30795 -10.22066 -9.90362 -9.84657 -9.62323 -9.19866 -8.57785 -7.95335 -6.55388 -4.15532 2.51041 3.06976 3.21510 3.25477 3.28895 3.70468 3.97908 4.08026 4.42204 4.84644 4.95653 5.14123 5.16921 5.36391 5.44215 5.51885 5.72922 5.75239 5.79148 5.80945 5.96488 6.06234 6.11850 6.12656 6.28220 6.28545 6.31113 6.36922 6.45138 6.49003 6.66214 6.73441 6.83871 6.86281 7.24039 7.99051 8.13771 8.18215 8.88154 9.27268 9.60475 10.54694 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.006394 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.717278 B = 4377.780811 C = 5456.008034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.046 4.046 3 H 0.074 0.926 4 C -0.111 4.111 5 C 0.482 3.518 6 O -0.595 6.595 7 N -0.465 5.465 8 C -0.348 4.348 9 H 0.109 0.891 10 C 0.069 3.931 11 N -0.857 5.857 12 Si 0.871 3.129 13 H -0.268 1.268 14 H -0.288 1.288 15 H -0.262 1.262 16 C 0.112 3.888 17 C -0.122 4.122 18 C 0.484 3.516 19 O -0.521 6.521 20 O -0.520 6.520 21 C -0.142 4.142 22 C -0.181 4.181 23 C -0.185 4.185 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.276 0.724 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.403 0.597 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.417 3.442 -5.522 7.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.092 0.908 4 C -0.150 4.150 5 C 0.272 3.728 6 O -0.481 6.481 7 N -0.186 5.186 8 C -0.474 4.474 9 H 0.127 0.873 10 C -0.139 4.139 11 N -0.491 5.491 12 Si 0.699 3.301 13 H -0.195 1.195 14 H -0.215 1.215 15 H -0.186 1.186 16 C -0.011 4.011 17 C -0.161 4.161 18 C 0.326 3.674 19 O -0.409 6.409 20 O -0.331 6.331 21 C -0.160 4.160 22 C -0.218 4.218 23 C -0.222 4.222 24 H 0.091 0.909 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.261 0.739 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.257 3.760 -5.670 8.026 hybrid contribution 0.580 0.700 1.202 1.507 sum -3.677 4.460 -4.468 7.306 Atomic orbital electron populations 1.21817 0.94981 1.01039 1.02177 1.20500 0.96005 0.98804 0.91213 0.90802 1.21398 1.02541 0.99727 0.91365 1.20557 0.81252 0.85950 0.85005 1.90525 1.48118 1.22466 1.86961 1.43782 1.57203 1.14776 1.02827 1.19113 1.26357 0.84708 1.17255 0.87348 1.25312 0.96087 0.96105 0.96422 1.69738 1.34350 1.18426 1.26630 0.87062 0.79669 0.82867 0.80509 1.19545 1.21480 1.18585 1.21440 0.92830 0.97199 0.89657 1.21760 1.00674 1.01118 0.92540 1.23769 0.78754 0.79969 0.84859 1.90696 1.47487 1.39540 1.63176 1.84585 1.35603 1.67002 1.45947 1.22406 0.95712 1.00931 0.96929 1.22923 0.93353 1.02229 1.03282 1.22980 1.05402 0.98126 0.95646 0.90881 0.93664 0.93541 0.89615 0.89459 0.91357 0.90793 0.90340 0.87442 0.86722 0.73915 0.88103 0.88705 0.89128 0.89052 0.89402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.94 37.16 0.33 -1.89 16 2 C -0.05 -0.74 2.14 -90.62 -0.19 -0.94 16 3 H 0.07 1.29 7.66 -51.93 -0.40 0.89 16 4 C -0.11 -2.05 4.05 -27.88 -0.11 -2.16 16 5 C 0.48 10.54 7.21 -10.99 -0.08 10.46 16 6 O -0.60 -13.82 13.88 5.55 0.08 -13.74 16 7 N -0.47 -10.71 2.22 -114.80 -0.25 -10.97 16 8 C -0.35 -8.57 9.12 -14.93 -0.14 -8.71 16 9 H 0.11 2.76 6.98 -52.48 -0.37 2.39 16 10 C 0.07 1.76 5.34 -17.47 -0.09 1.67 16 11 N -0.86 -22.88 13.96 55.50 0.77 -22.11 16 12 Si 0.87 20.64 24.93 -169.99 -4.24 16.40 16 13 H -0.27 -6.39 6.60 56.52 0.37 -6.02 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.26 -6.31 7.11 56.52 0.40 -5.91 16 16 C 0.11 2.50 3.46 -4.04 -0.01 2.48 16 17 C -0.12 -2.29 6.14 -27.88 -0.17 -2.47 16 18 C 0.48 8.55 8.33 36.01 0.30 8.85 16 19 O -0.52 -10.69 16.74 -18.75 -0.31 -11.00 16 20 O -0.52 -7.13 13.42 -39.27 -0.53 -7.66 16 21 C -0.14 -1.91 5.06 -90.58 -0.46 -2.37 16 22 C -0.18 -2.30 9.75 -26.73 -0.26 -2.56 16 23 C -0.18 -2.20 10.18 -26.69 -0.27 -2.47 16 24 H 0.07 1.30 6.21 -51.93 -0.32 0.98 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.57 7.19 -51.93 -0.37 1.19 16 28 H 0.09 1.62 7.56 -51.93 -0.39 1.23 16 29 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.07 1.75 2.79 -51.93 -0.14 1.60 16 31 H 0.08 1.79 7.45 -51.93 -0.39 1.41 16 32 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 33 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 34 H 0.40 3.56 9.10 45.56 0.41 3.97 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.09 1.27 7.97 -51.93 -0.41 0.86 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -29.46 322.00 -5.72 -35.17 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.93 Total: 9.16 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.16 Total: -0.11 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.52 Total: -33.08 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.76 Total: -32.40 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.24 Total: 16.40 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -29.46 -5.72 -35.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.069 kcal (2) G-P(sol) polarization free energy of solvation -29.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds