Wall clock time and date at job start Mon Mar 30 2020 01:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46884 * 2 1 4 4 C 1.53000 * 109.47503 * 119.99981 * 2 1 3 5 5 C 1.50697 * 109.46988 * 294.93096 * 4 2 1 6 6 O 1.21292 * 120.00210 * 353.07806 * 5 4 2 7 7 N 1.34775 * 119.99857 * 173.08377 * 5 4 2 8 8 C 1.37096 * 120.00511 * 355.46706 * 7 5 4 9 9 H 1.08008 * 119.99515 * 324.44935 * 8 7 5 10 10 C 1.38949 * 120.00452 * 144.44280 * 8 7 5 11 11 N 1.31408 * 120.00079 * 159.05833 * 10 8 7 12 12 Si 1.86798 * 119.99782 * 339.05662 * 10 8 7 13 13 H 1.48505 * 109.47053 * 93.40224 * 12 10 8 14 14 H 1.48505 * 109.47133 * 213.39906 * 12 10 8 15 15 H 1.48496 * 109.47533 * 333.40417 * 12 10 8 16 16 C 1.46505 * 119.99943 * 175.46635 * 7 5 4 17 17 C 1.53008 * 109.46667 * 90.00220 * 16 7 5 18 18 C 1.50700 * 109.46720 * 180.02562 * 17 16 7 19 19 O 1.20829 * 120.00318 * 359.97438 * 18 17 16 20 20 O 1.34234 * 120.00011 * 179.97438 * 18 17 16 21 21 C 1.53005 * 109.47545 * 240.00218 * 2 1 3 22 22 C 1.52999 * 117.50241 * 174.00215 * 21 2 1 23 23 C 1.53001 * 60.03073 * 252.49993 * 22 21 2 24 24 H 1.08998 * 109.47153 * 299.99997 * 1 2 3 25 25 H 1.08997 * 109.46964 * 60.00213 * 1 2 3 26 26 H 1.09003 * 109.46884 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47052 * 54.92538 * 4 2 1 28 28 H 1.08997 * 109.47612 * 174.92537 * 4 2 1 29 29 H 0.96999 * 120.00390 * 180.02562 * 11 10 8 30 30 H 1.08999 * 109.47375 * 209.99482 * 16 7 5 31 31 H 1.08999 * 109.47332 * 330.00378 * 16 7 5 32 32 H 1.08999 * 109.47142 * 299.99658 * 17 16 7 33 33 H 1.08990 * 109.47333 * 59.99970 * 17 16 7 34 34 H 0.96700 * 117.00159 * 179.97438 * 20 18 17 35 35 H 1.09000 * 115.55549 * 319.69848 * 21 2 1 36 36 H 1.09005 * 117.49727 * 359.97438 * 22 21 2 37 37 H 1.08994 * 117.49972 * 144.99536 * 22 21 2 38 38 H 1.09004 * 117.49493 * 107.50450 * 23 22 21 39 39 H 1.09000 * 117.49746 * 252.51684 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6429 0.0580 2.4764 6 8 1.1254 1.1489 2.3611 7 7 1.8628 -0.4573 3.7022 8 6 2.3617 -1.7276 3.8325 9 1 2.0682 -2.4973 3.1339 10 6 3.2449 -2.0250 4.8632 11 7 3.4058 -3.2699 5.2520 12 14 4.2036 -0.6550 5.6960 13 1 3.4621 -0.1907 6.8960 14 1 5.5382 -1.1623 6.1044 15 1 4.3725 0.4770 4.7499 16 6 1.5688 0.3401 4.8956 17 6 0.1231 0.0921 5.3311 18 6 -0.1795 0.9128 6.5582 19 8 0.6736 1.6228 7.0358 20 8 -1.3969 0.8551 7.1208 21 6 2.0401 -0.7212 -1.2493 22 6 3.5481 -0.7065 -1.5073 23 6 2.6155 0.1391 -2.3770 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.6044 -1.7193 1.2958 28 1 3.1262 -0.8006 1.2049 29 1 4.0220 -3.4774 5.9717 30 1 2.2451 0.0524 5.7005 31 1 1.7035 1.3975 4.6683 32 1 -0.5532 0.3797 4.5262 33 1 -0.0116 -0.9653 5.5584 34 1 -1.5436 1.3991 7.9067 35 1 1.4898 -1.6187 -1.5317 36 1 4.1768 -0.1825 -0.7873 37 1 3.9901 -1.5944 -1.9592 38 1 2.6309 1.2189 -2.2289 39 1 2.4438 -0.1928 -3.4009 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592225707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:25:59 Heat of formation + Delta-G solvation = -126.014808 kcal Electronic energy + Delta-G solvation = -21271.171702 eV Core-core repulsion = 17985.859037 eV Total energy + Delta-G solvation = -3285.312665 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.49139 -40.77155 -38.75474 -37.32536 -36.89660 -34.32030 -33.87993 -32.54220 -28.86355 -26.96304 -26.02192 -24.07397 -23.08573 -22.27302 -21.04150 -20.48634 -19.32548 -18.51538 -18.14031 -17.88641 -17.04545 -16.73728 -16.45019 -15.99216 -15.91412 -15.20414 -14.79541 -14.69607 -14.34895 -14.05275 -14.02977 -13.67378 -13.53506 -13.01320 -12.89434 -12.68051 -12.62424 -12.33334 -12.20363 -12.05739 -11.95548 -11.80511 -11.71119 -11.57336 -11.10536 -10.99087 -10.75638 -10.34510 -9.84533 -8.54560 -6.13646 1.10074 1.16589 1.29175 1.36690 1.81548 1.98411 2.13535 2.70685 2.93069 3.05205 3.77622 3.81331 3.85097 4.02386 4.11180 4.23874 4.29300 4.42685 4.50521 4.54045 4.60659 4.70694 4.74973 4.84363 4.86634 4.93893 5.05657 5.10168 5.24156 5.28442 5.35050 5.36301 5.51052 5.51437 5.61225 6.06464 6.23177 6.92431 6.94126 7.39958 7.76467 8.59033 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.006394 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.717278 B = 4377.780811 C = 5456.008034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.040 4.040 3 H 0.056 0.944 4 C -0.105 4.105 5 C 0.479 3.521 6 O -0.608 6.608 7 N -0.476 5.476 8 C -0.335 4.335 9 H 0.100 0.900 10 C 0.040 3.960 11 N -0.887 5.887 12 Si 0.910 3.090 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.272 1.272 16 C 0.109 3.891 17 C -0.117 4.117 18 C 0.495 3.505 19 O -0.553 6.553 20 O -0.504 6.504 21 C -0.151 4.151 22 C -0.186 4.186 23 C -0.170 4.170 24 H 0.045 0.955 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.280 0.720 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.428 0.572 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 3.497 -6.527 9.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.059 4.059 3 H 0.075 0.925 4 C -0.145 4.145 5 C 0.271 3.729 6 O -0.494 6.494 7 N -0.197 5.197 8 C -0.462 4.462 9 H 0.117 0.883 10 C -0.165 4.165 11 N -0.524 5.524 12 Si 0.739 3.261 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.197 1.197 16 C -0.014 4.014 17 C -0.155 4.155 18 C 0.339 3.661 19 O -0.444 6.444 20 O -0.317 6.317 21 C -0.169 4.169 22 C -0.223 4.223 23 C -0.207 4.207 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.085 0.915 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.290 0.710 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.107 0.893 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.042 3.826 -6.661 9.189 hybrid contribution 0.724 0.746 1.497 1.822 sum -4.318 4.571 -5.164 8.137 Atomic orbital electron populations 1.21753 0.94474 1.01593 1.01724 1.20416 0.96396 0.97806 0.91324 0.92513 1.21429 1.02433 0.99666 0.90975 1.21162 0.80283 0.85979 0.85519 1.90515 1.48423 1.23203 1.87225 1.43888 1.57818 1.14459 1.03568 1.19030 1.25648 0.85031 1.16484 0.88289 1.25637 0.96759 0.96921 0.97153 1.69769 1.35559 1.19342 1.27754 0.86442 0.79106 0.81028 0.79562 1.19914 1.20920 1.19708 1.21376 0.94805 0.96256 0.88996 1.21572 0.98608 1.01646 0.93723 1.23355 0.79351 0.79054 0.84347 1.90695 1.48773 1.40910 1.64063 1.84504 1.33059 1.67172 1.47009 1.22321 0.96373 1.01740 0.96456 1.22981 0.92776 1.03050 1.03477 1.23055 1.03590 0.97826 0.96192 0.93558 0.91819 0.92464 0.89256 0.89653 0.91020 0.92210 0.91503 0.86538 0.86370 0.70966 0.86854 0.89959 0.87642 0.89302 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.10 8.94 71.98 0.64 -3.45 16 2 C -0.04 -1.26 2.14 -10.79 -0.02 -1.28 16 3 H 0.06 1.95 7.66 -2.39 -0.02 1.93 16 4 C -0.11 -3.85 4.05 29.85 0.12 -3.73 16 5 C 0.48 20.93 7.21 87.66 0.63 21.56 16 6 O -0.61 -28.24 13.88 -3.07 -0.04 -28.28 16 7 N -0.48 -21.93 2.22 -635.51 -1.41 -23.34 16 8 C -0.33 -16.51 9.12 84.04 0.77 -15.75 16 9 H 0.10 5.04 6.98 -2.91 -0.02 5.02 16 10 C 0.04 2.07 5.34 84.93 0.45 2.53 16 11 N -0.89 -47.42 13.96 21.66 0.30 -47.12 16 12 Si 0.91 42.76 24.93 68.60 1.71 44.47 16 13 H -0.27 -12.84 6.60 99.48 0.66 -12.19 16 14 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 15 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 16 C 0.11 4.85 3.46 86.38 0.30 5.15 16 17 C -0.12 -4.30 6.14 29.85 0.18 -4.12 16 18 C 0.50 16.84 8.33 71.24 0.59 17.43 16 19 O -0.55 -22.31 16.74 21.96 0.37 -21.94 16 20 O -0.50 -12.53 13.42 -51.45 -0.69 -13.22 16 21 C -0.15 -3.75 5.06 -10.77 -0.05 -3.80 16 22 C -0.19 -4.37 9.75 30.59 0.30 -4.07 16 23 C -0.17 -3.60 10.18 30.62 0.31 -3.29 16 24 H 0.05 1.61 6.21 -2.39 -0.01 1.60 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.09 3.20 7.19 -2.39 -0.02 3.18 16 28 H 0.09 3.14 7.56 -2.39 -0.02 3.13 16 29 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 30 H 0.06 2.83 2.79 -2.39 -0.01 2.83 16 31 H 0.07 3.09 7.45 -2.39 -0.02 3.07 16 32 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 33 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 34 H 0.43 6.28 9.10 -74.06 -0.67 5.60 16 35 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 36 H 0.08 2.13 7.97 -2.38 -0.02 2.12 16 37 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 39 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -62.12 322.00 4.80 -57.32 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.34 Total: 24.94 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: 4.22 Total: 7.18 kcal Atomic # 7 Polarization: -69.35 SS G_CDS: -1.11 Total: -70.46 kcal Atomic # 8 Polarization: -63.09 SS G_CDS: -0.37 Total: -63.45 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.71 Total: 44.47 kcal Total: -62.12 4.80 -57.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592225707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.695 kcal (2) G-P(sol) polarization free energy of solvation -62.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds