Wall clock time and date at job start Mon Mar 30 2020 01:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.87430 * 2 1 4 4 C 1.54324 * 109.87803 * 121.17788 * 2 1 3 5 5 H 1.08998 * 110.72182 * 23.06629 * 4 2 1 6 6 C 1.50696 * 110.72084 * 259.96880 * 4 2 1 7 7 O 1.20833 * 119.99877 * 0.02562 * 6 4 2 8 8 O 1.34225 * 120.00489 * 180.02562 * 6 4 2 9 9 C 1.55154 * 102.93928 * 141.61069 * 4 2 1 10 10 C 1.55132 * 101.48912 * 324.33215 * 9 4 2 11 11 N 1.47020 * 109.88153 * 238.98232 * 2 1 3 12 12 C 1.34780 * 125.64476 * 61.61308 * 11 2 1 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 2 14 14 C 1.50701 * 119.99795 * 179.97438 * 12 11 2 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46744 * 90.00434 * 21 19 17 23 23 H 1.48500 * 109.47304 * 210.00023 * 21 19 17 24 24 H 1.48498 * 109.47341 * 330.00626 * 21 19 17 25 25 H 1.08997 * 109.47477 * 179.55693 * 1 2 3 26 26 H 1.09004 * 109.47192 * 299.56243 * 1 2 3 27 27 H 1.09003 * 109.46984 * 59.55934 * 1 2 3 28 28 H 0.96700 * 117.00662 * 180.02562 * 8 6 4 29 29 H 1.09003 * 111.00672 * 82.57101 * 9 4 2 30 30 H 1.09000 * 111.00549 * 206.38501 * 9 4 2 31 31 H 1.09004 * 110.49262 * 278.45625 * 10 9 4 32 32 H 1.08995 * 110.34714 * 156.06592 * 10 9 4 33 33 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 34 34 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 35 35 H 1.09002 * 109.47153 * 299.99998 * 15 14 12 36 36 H 1.08998 * 109.47533 * 59.99628 * 15 14 12 37 37 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 38 38 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 39 39 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 1.3038 -1.4459 1.6181 6 6 2.4670 0.2198 2.3178 7 8 2.3596 1.4089 2.1318 8 8 2.9533 -0.2361 3.4828 9 6 3.2875 -1.5152 0.6903 10 6 2.8099 -1.8815 -0.7395 11 7 2.0300 -0.7124 -1.1849 12 6 1.8075 -0.3585 -2.4662 13 8 1.1430 0.6246 -2.7172 14 6 2.3842 -1.1844 -3.5871 15 6 1.9851 -0.5705 -4.9305 16 6 2.5712 -1.4085 -6.0684 17 6 2.1776 -0.8042 -7.3916 18 1 1.5704 0.0886 -7.4183 19 6 2.5934 -1.3905 -8.5682 20 7 3.3331 -2.4774 -8.5358 21 14 2.1048 -0.6418 -10.2084 22 1 3.1320 0.3454 -10.6274 23 1 2.0024 -1.7137 -11.2310 24 1 0.7919 0.0382 -10.0708 25 1 -0.3634 -1.0276 -0.0079 26 1 -0.3634 0.5070 0.8939 27 1 -0.3633 0.5207 -0.8860 28 1 3.2039 0.4249 4.1427 29 1 4.1654 -0.8698 0.6592 30 1 3.4855 -2.4125 1.2766 31 1 2.1801 -2.7708 -0.7154 32 1 3.6655 -2.0393 -1.3961 33 1 3.4709 -1.2017 -3.5036 34 1 1.9988 -2.2020 -3.5242 35 1 0.8984 -0.5535 -5.0137 36 1 2.3702 0.4472 -4.9937 37 1 3.6579 -1.4251 -5.9850 38 1 2.1864 -2.4264 -6.0055 39 1 3.6253 -2.8900 -9.3636 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594144498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:52 Heat of formation + Delta-G solvation = -145.642607 kcal Electronic energy + Delta-G solvation = -20514.658220 eV Core-core repulsion = 17228.494430 eV Total energy + Delta-G solvation = -3286.163790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.13616 -39.75526 -37.54387 -36.47478 -34.20515 -32.52514 -31.83560 -31.47061 -27.94555 -26.91263 -24.36563 -23.23144 -22.72923 -20.89757 -19.95829 -18.99115 -18.33349 -17.57026 -16.79987 -16.14089 -15.92226 -15.72408 -15.15435 -14.50429 -14.31994 -14.09247 -13.79611 -13.49697 -13.17300 -12.87160 -12.47274 -12.25138 -12.14199 -11.95322 -11.90419 -11.72486 -11.39682 -11.33230 -11.11068 -10.83009 -10.78020 -10.56871 -10.51672 -9.65483 -9.64074 -9.25407 -9.00292 -8.67795 -8.30604 -5.96484 -3.97677 1.77260 2.42840 2.90848 3.08599 3.36027 3.41732 3.46836 3.88228 4.04035 4.49325 4.50683 4.77026 4.83235 4.93181 5.05206 5.20453 5.26760 5.37861 5.39276 5.39965 5.54397 5.63694 5.70009 5.74762 5.90991 6.05915 6.13815 6.22864 6.36908 6.74272 6.94879 7.17449 7.45986 7.54932 7.72523 7.85101 8.04407 8.40916 8.48584 9.09424 9.66261 11.15065 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045644 B = 0.003157 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.293818 B = 8866.284205 C = 9187.720095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.094 0.906 4 C -0.095 4.095 5 H 0.125 0.875 6 C 0.490 3.510 7 O -0.506 6.506 8 O -0.514 6.514 9 C -0.119 4.119 10 C 0.099 3.901 11 N -0.626 5.626 12 C 0.531 3.469 13 O -0.530 6.530 14 C -0.132 4.132 15 C -0.096 4.096 16 C 0.021 3.979 17 C -0.517 4.517 18 H 0.056 0.944 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.412 0.588 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.038 -1.309 25.335 25.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.115 4.115 5 H 0.143 0.857 6 C 0.331 3.669 7 O -0.393 6.393 8 O -0.326 6.326 9 C -0.157 4.157 10 C -0.024 4.024 11 N -0.363 5.363 12 C 0.321 3.679 13 O -0.405 6.405 14 C -0.172 4.172 15 C -0.134 4.134 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.271 0.729 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.034 0.966 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.404 -0.826 24.618 24.635 hybrid contribution 0.008 0.687 -0.332 0.763 sum -0.396 -0.139 24.286 24.289 Atomic orbital electron populations 1.22147 0.94053 1.02352 1.03470 1.21369 0.95102 0.97067 0.82471 0.88767 1.22110 1.00723 0.96684 0.91934 0.85741 1.23044 0.73295 0.88569 0.81985 1.90767 1.50604 1.18184 1.79771 1.84513 1.75840 1.45658 1.26576 1.22841 0.95986 1.00995 0.95871 1.22396 0.96209 0.89179 0.94611 1.48723 1.54042 1.28471 1.05061 1.21012 0.79751 0.85399 0.81697 1.90680 1.39330 1.27576 1.82918 1.21841 1.01665 0.99661 0.94051 1.21465 1.00888 0.99765 0.91255 1.19122 0.95978 0.94847 0.91645 1.21279 1.32052 1.11198 0.91046 0.92572 1.25018 0.95230 0.95012 0.99253 1.69963 1.36556 1.19966 1.27307 0.86592 0.79033 0.78804 0.83593 1.20684 1.21268 1.19831 0.92336 0.91936 0.90312 0.72916 0.89879 0.88309 0.90581 0.89321 0.89411 0.89367 0.92657 0.92673 0.96625 0.96604 0.93085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.10 37.16 0.34 -1.52 16 2 C 0.14 1.67 2.88 -66.95 -0.19 1.48 16 3 H 0.09 1.35 6.81 -51.93 -0.35 1.00 16 4 C -0.09 -0.75 2.98 -89.94 -0.27 -1.02 16 5 H 0.12 0.73 7.85 -51.93 -0.41 0.32 16 6 C 0.49 4.28 7.63 36.00 0.27 4.55 16 7 O -0.51 -6.29 16.18 -18.76 -0.30 -6.60 16 8 O -0.51 -2.98 13.42 -39.24 -0.53 -3.51 16 9 C -0.12 -0.78 6.53 -24.46 -0.16 -0.94 16 10 C 0.10 0.83 6.70 -2.41 -0.02 0.82 16 11 N -0.63 -7.91 3.06 -162.88 -0.50 -8.41 16 12 C 0.53 8.86 7.64 -10.98 -0.08 8.77 16 13 O -0.53 -10.89 15.02 5.56 0.08 -10.80 16 14 C -0.13 -2.22 4.70 -27.88 -0.13 -2.35 16 15 C -0.10 -2.09 4.44 -26.74 -0.12 -2.21 16 16 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 17 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 21 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.08 1.14 6.88 -51.93 -0.36 0.78 16 28 H 0.41 0.80 9.10 45.56 0.41 1.22 16 29 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.70 7.48 -51.93 -0.39 0.32 16 33 H 0.09 1.33 7.85 -51.93 -0.41 0.93 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -36.11 327.24 -6.77 -42.88 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.26 Total: -3.34 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -0.91 Total: -5.85 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.24 Total: -34.83 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.75 Total: -20.91 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -36.11 -6.77 -42.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594144498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.765 kcal (2) G-P(sol) polarization free energy of solvation -36.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds