Wall clock time and date at job start Mon Mar 30 2020 01:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.87430 * 2 1 4 4 C 1.54324 * 109.87803 * 121.17788 * 2 1 3 5 5 H 1.08998 * 110.72182 * 23.06629 * 4 2 1 6 6 C 1.50696 * 110.72084 * 259.96880 * 4 2 1 7 7 O 1.20833 * 119.99877 * 0.02562 * 6 4 2 8 8 O 1.34225 * 120.00489 * 180.02562 * 6 4 2 9 9 C 1.55154 * 102.93928 * 141.61069 * 4 2 1 10 10 C 1.55132 * 101.48912 * 324.33215 * 9 4 2 11 11 N 1.47020 * 109.88153 * 238.98232 * 2 1 3 12 12 C 1.34780 * 125.64476 * 61.61308 * 11 2 1 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 2 14 14 C 1.50701 * 119.99795 * 179.97438 * 12 11 2 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 12 11 16 16 C 1.52992 * 109.47482 * 179.97438 * 15 14 12 17 17 C 1.50698 * 109.47592 * 179.97438 * 16 15 14 18 18 H 1.08003 * 120.00057 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00356 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99989 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00117 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46744 * 90.00434 * 21 19 17 23 23 H 1.48500 * 109.47304 * 210.00023 * 21 19 17 24 24 H 1.48498 * 109.47341 * 330.00626 * 21 19 17 25 25 H 1.08997 * 109.47477 * 179.55693 * 1 2 3 26 26 H 1.09004 * 109.47192 * 299.56243 * 1 2 3 27 27 H 1.09003 * 109.46984 * 59.55934 * 1 2 3 28 28 H 0.96700 * 117.00662 * 180.02562 * 8 6 4 29 29 H 1.09003 * 111.00672 * 82.57101 * 9 4 2 30 30 H 1.09000 * 111.00549 * 206.38501 * 9 4 2 31 31 H 1.09004 * 110.49262 * 278.45625 * 10 9 4 32 32 H 1.08995 * 110.34714 * 156.06592 * 10 9 4 33 33 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 34 34 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 35 35 H 1.09002 * 109.47153 * 299.99998 * 15 14 12 36 36 H 1.08998 * 109.47533 * 59.99628 * 15 14 12 37 37 H 1.09002 * 109.47103 * 300.00247 * 16 15 14 38 38 H 1.09001 * 109.47066 * 60.00169 * 16 15 14 39 39 H 0.96996 * 119.99885 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7513 1.2417 5 1 1.3038 -1.4459 1.6181 6 6 2.4670 0.2198 2.3178 7 8 2.3596 1.4089 2.1318 8 8 2.9533 -0.2361 3.4828 9 6 3.2875 -1.5152 0.6903 10 6 2.8099 -1.8815 -0.7395 11 7 2.0300 -0.7124 -1.1849 12 6 1.8075 -0.3585 -2.4662 13 8 1.1430 0.6246 -2.7172 14 6 2.3842 -1.1844 -3.5871 15 6 1.9851 -0.5705 -4.9305 16 6 2.5712 -1.4085 -6.0684 17 6 2.1776 -0.8042 -7.3916 18 1 1.5704 0.0886 -7.4183 19 6 2.5934 -1.3905 -8.5682 20 7 3.3331 -2.4774 -8.5358 21 14 2.1048 -0.6418 -10.2084 22 1 3.1320 0.3454 -10.6274 23 1 2.0024 -1.7137 -11.2310 24 1 0.7919 0.0382 -10.0708 25 1 -0.3634 -1.0276 -0.0079 26 1 -0.3634 0.5070 0.8939 27 1 -0.3633 0.5207 -0.8860 28 1 3.2039 0.4249 4.1427 29 1 4.1654 -0.8698 0.6592 30 1 3.4855 -2.4125 1.2766 31 1 2.1801 -2.7708 -0.7154 32 1 3.6655 -2.0393 -1.3961 33 1 3.4709 -1.2017 -3.5036 34 1 1.9988 -2.2020 -3.5242 35 1 0.8984 -0.5535 -5.0137 36 1 2.3702 0.4472 -4.9937 37 1 3.6579 -1.4251 -5.9850 38 1 2.1864 -2.4264 -6.0055 39 1 3.6253 -2.8900 -9.3636 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594144498.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:51 Heat of formation + Delta-G solvation = -170.891636 kcal Electronic energy + Delta-G solvation = -20515.753100 eV Core-core repulsion = 17228.494430 eV Total energy + Delta-G solvation = -3287.258670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.91842 -40.76305 -38.58326 -37.12252 -36.12841 -34.15210 -33.12912 -32.36698 -29.68625 -27.79794 -26.04989 -24.26311 -23.64762 -22.18954 -21.21858 -20.01130 -19.10566 -18.54321 -18.33153 -17.61987 -16.92550 -16.57514 -16.49217 -16.35501 -15.55249 -14.96193 -14.77503 -14.52210 -14.42708 -14.00210 -13.79721 -13.69383 -13.43707 -13.06956 -12.89291 -12.69122 -12.61924 -12.59232 -12.48806 -12.39868 -12.06279 -11.86189 -11.55726 -11.53666 -11.45475 -11.25165 -10.74036 -10.53925 -9.71498 -8.20204 -6.29853 1.12228 1.39563 1.40501 1.52111 1.61074 1.69546 2.24218 2.41943 3.12730 3.13093 3.41064 3.79189 3.90635 4.12678 4.18404 4.21252 4.25158 4.29756 4.42370 4.52182 4.66326 4.69844 4.82219 4.95484 4.98301 4.99481 5.08917 5.11868 5.16461 5.20515 5.39818 5.54126 5.58138 5.75768 5.86761 6.27666 6.45595 6.85158 6.94471 7.16473 7.38645 8.91305 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045644 B = 0.003157 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.293818 B = 8866.284205 C = 9187.720095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.060 0.940 4 C -0.086 4.086 5 H 0.157 0.843 6 C 0.497 3.503 7 O -0.552 6.552 8 O -0.501 6.501 9 C -0.107 4.107 10 C 0.087 3.913 11 N -0.620 5.620 12 C 0.528 3.472 13 O -0.582 6.582 14 C -0.121 4.121 15 C -0.083 4.083 16 C 0.028 3.972 17 C -0.549 4.549 18 H 0.049 0.951 19 C 0.005 3.995 20 N -0.928 5.928 21 Si 0.960 3.040 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.269 1.269 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.430 0.570 29 H 0.076 0.924 30 H 0.137 0.863 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.040 0.960 36 H 0.037 0.963 37 H 0.002 0.998 38 H 0.004 0.996 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -2.977 26.864 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.033 3.967 3 H 0.078 0.922 4 C -0.105 4.105 5 H 0.174 0.826 6 C 0.340 3.660 7 O -0.443 6.443 8 O -0.314 6.314 9 C -0.145 4.145 10 C -0.034 4.034 11 N -0.354 5.354 12 C 0.319 3.681 13 O -0.462 6.462 14 C -0.161 4.161 15 C -0.121 4.121 16 C -0.009 4.009 17 C -0.587 4.587 18 H 0.067 0.933 19 C -0.193 4.193 20 N -0.568 5.568 21 Si 0.785 3.215 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.194 1.194 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.059 0.941 28 H 0.292 0.708 29 H 0.095 0.905 30 H 0.155 0.845 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.022 0.978 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.054 -2.538 26.219 26.342 hybrid contribution -0.082 1.179 -0.712 1.379 sum -0.029 -1.360 25.507 25.543 Atomic orbital electron populations 1.22077 0.94005 1.03128 1.02247 1.21393 0.95259 0.96091 0.83934 0.92235 1.22084 1.02132 0.96338 0.89984 0.82583 1.23136 0.72363 0.87830 0.82630 1.90771 1.52696 1.20142 1.80702 1.84463 1.74950 1.46048 1.25967 1.22884 0.94749 1.02110 0.94761 1.22826 0.96503 0.88219 0.95839 1.48662 1.53292 1.29424 1.04033 1.20862 0.79432 0.84736 0.83117 1.90662 1.41794 1.29717 1.84010 1.21646 1.02881 1.00196 0.91352 1.21174 0.99467 0.98424 0.93047 1.18994 0.95042 0.94590 0.92241 1.21692 1.32562 1.11469 0.92964 0.93269 1.25879 0.94983 0.95396 1.03088 1.70057 1.37145 1.20973 1.28626 0.85520 0.78867 0.78260 0.78853 1.19779 1.20143 1.19404 0.90388 0.90676 0.94079 0.70806 0.90545 0.84511 0.87970 0.88580 0.87512 0.87108 0.94156 0.94453 0.97996 0.97800 0.92615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 9.10 71.98 0.66 -2.88 16 2 C 0.14 3.11 2.88 45.34 0.13 3.24 16 3 H 0.06 1.79 6.81 -2.39 -0.02 1.78 16 4 C -0.09 -1.11 2.98 -10.35 -0.03 -1.14 16 5 H 0.16 1.09 7.85 -2.39 -0.02 1.07 16 6 C 0.50 7.66 7.63 71.23 0.54 8.21 16 7 O -0.55 -13.61 16.18 21.94 0.36 -13.26 16 8 O -0.50 -4.21 13.42 -51.37 -0.69 -4.90 16 9 C -0.11 -0.98 6.53 32.06 0.21 -0.77 16 10 C 0.09 1.18 6.70 86.93 0.58 1.76 16 11 N -0.62 -15.00 3.06 -787.62 -2.41 -17.41 16 12 C 0.53 17.78 7.64 87.66 0.67 18.45 16 13 O -0.58 -25.13 15.02 -3.03 -0.05 -25.18 16 14 C -0.12 -4.01 4.70 29.85 0.14 -3.87 16 15 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 16 C 0.03 1.51 4.97 29.84 0.15 1.66 16 17 C -0.55 -32.63 9.11 25.60 0.23 -32.40 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 19 C 0.00 0.27 5.46 84.65 0.46 0.73 16 20 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 21 Si 0.96 45.52 29.54 68.60 2.03 47.54 16 22 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.04 1.24 6.88 -2.39 -0.02 1.23 16 28 H 0.43 0.48 9.10 -74.06 -0.67 -0.20 16 29 H 0.08 0.84 8.04 -2.39 -0.02 0.83 16 30 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 1.20 7.48 -2.39 -0.02 1.19 16 33 H 0.11 3.12 7.85 -2.39 -0.02 3.10 16 34 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 36 H 0.04 1.77 8.10 -2.39 -0.02 1.75 16 37 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -81.76 327.24 3.77 -77.99 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 0.37 Total: 1.81 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: 3.88 Total: -10.60 kcal Atomic # 7 Polarization: -71.28 SS G_CDS: -2.13 Total: -73.41 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -0.38 Total: -43.33 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.54 kcal Total: -81.76 3.77 -77.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594144498.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.901 kcal (2) G-P(sol) polarization free energy of solvation -81.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds