Wall clock time and date at job start Mon Mar 30 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.01087 * 2 1 4 4 C 1.54261 * 110.07432 * 238.57996 * 2 1 3 5 5 C 1.54886 * 104.19805 * 217.07592 * 4 2 1 6 6 C 1.54892 * 102.74500 * 37.94604 * 5 4 2 7 7 C 1.53870 * 110.03485 * 121.38888 * 2 1 3 8 8 H 1.09002 * 110.03498 * 238.62078 * 7 2 1 9 9 C 1.53006 * 110.03177 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47005 * 184.04377 * 9 7 2 11 11 O 1.21291 * 120.00391 * 5.77419 * 10 9 7 12 12 N 1.34773 * 119.99675 * 185.78287 * 10 9 7 13 13 C 1.37099 * 120.00445 * 354.64171 * 12 10 9 14 14 H 1.07998 * 119.99470 * 17.68711 * 13 12 10 15 15 C 1.38947 * 120.00186 * 197.68538 * 13 12 10 16 16 N 1.31407 * 120.00275 * 4.07638 * 15 13 12 17 17 Si 1.86805 * 119.99831 * 184.06745 * 15 13 12 18 18 H 1.48503 * 109.46799 * 90.00317 * 17 15 13 19 19 H 1.48494 * 109.47138 * 210.00373 * 17 15 13 20 20 H 1.48496 * 109.47113 * 330.00314 * 17 15 13 21 21 C 1.46501 * 119.99990 * 174.65416 * 12 10 9 22 22 C 1.50699 * 109.47757 * 89.99222 * 21 12 10 23 23 O 1.20826 * 119.99779 * 359.97438 * 22 21 12 24 24 O 1.34221 * 120.00178 * 180.02562 * 22 21 12 25 25 H 1.09004 * 109.47455 * 297.45047 * 1 2 3 26 26 H 1.09000 * 109.47353 * 57.45498 * 1 2 3 27 27 H 1.09010 * 109.46724 * 177.45640 * 1 2 3 28 28 H 1.08993 * 110.48876 * 335.76269 * 4 2 1 29 29 H 1.09015 * 110.48349 * 98.40276 * 4 2 1 30 30 H 1.09000 * 110.75894 * 279.63058 * 5 4 2 31 31 H 1.08997 * 110.91596 * 156.32742 * 5 4 2 32 32 H 1.08996 * 110.48576 * 203.37927 * 6 5 4 33 33 H 1.09001 * 110.59660 * 80.78862 * 6 5 4 34 34 H 1.09000 * 109.47087 * 304.04064 * 9 7 2 35 35 H 1.08991 * 109.46781 * 64.04375 * 9 7 2 36 36 H 0.97003 * 120.00446 * 185.00472 * 16 15 13 37 37 H 1.09004 * 109.47169 * 209.99733 * 21 12 10 38 38 H 1.09005 * 109.46578 * 329.99137 * 21 12 10 39 39 H 0.96707 * 117.00254 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0595 -0.7553 -1.2364 5 6 3.3151 -1.4995 -0.7181 6 6 2.8886 -1.9395 0.7044 7 6 2.0572 -0.7529 1.2340 8 1 2.6860 -0.0942 1.8329 9 6 0.8862 -1.2664 2.0744 10 6 1.4140 -1.9142 3.3286 11 8 2.5993 -1.8688 3.5820 12 7 0.5690 -2.5442 4.1685 13 6 -0.7823 -2.5022 3.9406 14 1 -1.1571 -2.2246 2.9665 15 6 -1.6693 -2.8167 4.9627 16 7 -1.2168 -3.0764 6.1688 17 14 -3.5053 -2.8703 4.6225 18 1 -3.8911 -4.2414 4.2023 19 1 -4.2480 -2.5028 5.8547 20 1 -3.8364 -1.9092 3.5399 21 6 1.0944 -3.2738 5.3252 22 6 1.1784 -2.3451 6.5091 23 8 0.8351 -1.1920 6.3979 24 8 1.6354 -2.7987 7.6868 25 1 -0.3634 0.4737 0.9120 26 1 -0.3634 0.5528 -0.8663 27 1 -0.3633 -1.0268 -0.0456 28 1 1.3160 -1.4664 -1.5964 29 1 2.3306 -0.0533 -2.0252 30 1 4.1719 -0.8271 -0.6739 31 1 3.5380 -2.3665 -1.3400 32 1 3.7647 -2.1017 1.3323 33 1 2.2796 -2.8424 0.6601 34 1 0.2375 -0.4323 2.3418 35 1 0.3191 -1.9978 1.4987 36 1 -1.8278 -3.3665 6.8641 37 1 0.4309 -4.1055 5.5622 38 1 2.0881 -3.6566 5.0925 39 1 1.6714 -2.1658 8.4170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594358431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:16 Heat of formation + Delta-G solvation = -135.217366 kcal Electronic energy + Delta-G solvation = -21905.579106 eV Core-core repulsion = 18619.867388 eV Total energy + Delta-G solvation = -3285.711718 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.51496 -38.71084 -37.47287 -35.08838 -34.40895 -31.63323 -31.37529 -30.42597 -27.95141 -25.46850 -24.69283 -24.19139 -20.88530 -20.44529 -19.29356 -18.23193 -16.99532 -16.85659 -16.17358 -15.45668 -15.43240 -14.58782 -14.32161 -14.22450 -14.04272 -13.90769 -13.36407 -12.94330 -12.68757 -12.06256 -11.92622 -11.80165 -11.51422 -11.33773 -11.24950 -10.92221 -10.68740 -10.59929 -10.49228 -10.45372 -10.40371 -10.19274 -10.16198 -9.99646 -9.77100 -9.51872 -9.01122 -8.47207 -7.96306 -6.43463 -4.02844 3.08298 3.16970 3.20237 3.70367 3.84470 4.05750 4.35262 4.73858 4.89844 4.93515 5.06260 5.11531 5.57177 5.67393 5.69836 5.81031 5.81884 5.94183 6.01215 6.06214 6.11061 6.23397 6.27735 6.36778 6.38590 6.46890 6.50361 6.66061 6.70844 6.75193 6.82651 6.91320 6.96250 7.31726 7.62856 7.75034 8.26747 8.99616 9.31334 9.41349 9.80598 10.60327 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.006849 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.363831 B = 4087.186436 C = 5159.755114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 H 0.066 0.934 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.109 4.109 7 C -0.071 4.071 8 H 0.074 0.926 9 C -0.113 4.113 10 C 0.470 3.530 11 O -0.599 6.599 12 N -0.438 5.438 13 C -0.318 4.318 14 H 0.104 0.896 15 C 0.033 3.967 16 N -0.890 5.890 17 Si 0.934 3.066 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.160 3.840 22 C 0.506 3.494 23 O -0.521 6.521 24 O -0.536 6.536 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.272 0.728 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.230 0.627 -8.246 8.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 H 0.084 0.916 4 C -0.156 4.156 5 C -0.165 4.165 6 C -0.147 4.147 7 C -0.090 4.090 8 H 0.093 0.907 9 C -0.152 4.152 10 C 0.260 3.740 11 O -0.485 6.485 12 N -0.158 5.158 13 C -0.446 4.446 14 H 0.121 0.879 15 C -0.169 4.169 16 N -0.531 5.531 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.194 1.194 21 C 0.034 3.966 22 C 0.348 3.652 23 O -0.408 6.408 24 O -0.347 6.347 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.149 0.851 38 H 0.091 0.909 39 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.569 0.694 -8.289 8.705 hybrid contribution -1.214 0.432 0.687 1.460 sum 1.355 1.126 -7.601 7.803 Atomic orbital electron populations 1.22010 0.95233 1.02037 1.01288 1.21798 0.95739 0.98966 0.94743 0.91564 1.22434 0.97459 0.98730 0.96945 1.22513 0.97409 0.99401 0.97141 1.22333 1.00108 0.97587 0.94649 1.21537 0.96000 0.96823 0.94640 0.90730 1.21654 0.98214 1.00916 0.94440 1.20390 0.86209 0.80565 0.86818 1.90518 1.16944 1.63085 1.77958 1.43433 1.06544 1.44880 1.20936 1.19729 0.80016 1.46828 0.97999 0.87879 1.25229 1.00793 0.96765 0.94096 1.69571 1.35987 1.45467 1.02057 0.85805 0.81630 0.78530 0.77986 1.20318 1.20909 1.19396 1.20539 0.99508 0.94125 0.82420 1.23653 0.70644 0.87932 0.82993 1.90533 1.45510 1.20637 1.84110 1.84532 1.79956 1.48042 1.22147 0.92012 0.93623 0.92144 0.91733 0.92457 0.92007 0.92213 0.91109 0.92150 0.89529 0.90029 0.91679 0.85136 0.90855 0.75734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 7.90 37.16 0.29 -1.66 16 2 C -0.09 -1.29 3.50 -89.51 -0.31 -1.60 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 C -0.12 -1.43 6.36 -25.08 -0.16 -1.59 16 5 C -0.13 -1.63 6.91 -24.74 -0.17 -1.80 16 6 C -0.11 -1.76 5.46 -25.07 -0.14 -1.89 16 7 C -0.07 -1.20 2.55 -89.50 -0.23 -1.43 16 8 H 0.07 1.40 7.87 -51.93 -0.41 1.00 16 9 C -0.11 -2.17 2.36 -27.88 -0.07 -2.24 16 10 C 0.47 11.25 7.33 -10.99 -0.08 11.17 16 11 O -0.60 -15.46 14.61 5.55 0.08 -15.38 16 12 N -0.44 -11.00 2.11 -116.09 -0.25 -11.24 16 13 C -0.32 -7.91 9.27 -14.93 -0.14 -8.05 16 14 H 0.10 2.37 6.40 -52.49 -0.34 2.03 16 15 C 0.03 0.82 5.28 -17.47 -0.09 0.73 16 16 N -0.89 -22.99 8.20 55.50 0.45 -22.54 16 17 Si 0.93 19.49 29.56 -169.99 -5.02 14.46 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C 0.16 3.90 5.21 -5.19 -0.03 3.87 16 22 C 0.51 12.72 6.24 36.01 0.22 12.95 16 23 O -0.52 -14.84 16.89 -18.75 -0.32 -15.15 16 24 O -0.54 -11.22 13.42 -39.23 -0.53 -11.74 16 25 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.80 6.88 -51.92 -0.36 0.45 16 28 H 0.06 0.76 7.82 -51.93 -0.41 0.36 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.26 7.74 -51.93 -0.40 0.86 16 33 H 0.06 0.99 7.78 -51.93 -0.40 0.59 16 34 H 0.09 1.69 6.45 -51.93 -0.34 1.35 16 35 H 0.08 1.48 6.36 -51.93 -0.33 1.15 16 36 H 0.27 6.76 8.32 -40.82 -0.34 6.42 16 37 H 0.13 3.19 6.29 -51.93 -0.33 2.87 16 38 H 0.07 1.70 7.50 -51.93 -0.39 1.31 16 39 H 0.39 6.37 9.10 45.56 0.41 6.79 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -30.79 310.27 -6.67 -37.46 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -4.87 Total: 11.02 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -0.89 Total: 8.44 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.21 Total: -33.78 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.76 Total: -42.28 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.79 -6.67 -37.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594358431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.760 kcal (2) G-P(sol) polarization free energy of solvation -30.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds