Wall clock time and date at job start Mon Mar 30 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.01087 * 2 1 4 4 C 1.54261 * 110.07432 * 238.57996 * 2 1 3 5 5 C 1.54886 * 104.19805 * 217.07592 * 4 2 1 6 6 C 1.54892 * 102.74500 * 37.94604 * 5 4 2 7 7 C 1.53870 * 110.03485 * 121.38888 * 2 1 3 8 8 H 1.09002 * 110.03498 * 238.62078 * 7 2 1 9 9 C 1.53006 * 110.03177 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47005 * 184.04377 * 9 7 2 11 11 O 1.21291 * 120.00391 * 5.77419 * 10 9 7 12 12 N 1.34773 * 119.99675 * 185.78287 * 10 9 7 13 13 C 1.37099 * 120.00445 * 354.64171 * 12 10 9 14 14 H 1.07998 * 119.99470 * 17.68711 * 13 12 10 15 15 C 1.38947 * 120.00186 * 197.68538 * 13 12 10 16 16 N 1.31407 * 120.00275 * 4.07638 * 15 13 12 17 17 Si 1.86805 * 119.99831 * 184.06745 * 15 13 12 18 18 H 1.48503 * 109.46799 * 90.00317 * 17 15 13 19 19 H 1.48494 * 109.47138 * 210.00373 * 17 15 13 20 20 H 1.48496 * 109.47113 * 330.00314 * 17 15 13 21 21 C 1.46501 * 119.99990 * 174.65416 * 12 10 9 22 22 C 1.50699 * 109.47757 * 89.99222 * 21 12 10 23 23 O 1.20826 * 119.99779 * 359.97438 * 22 21 12 24 24 O 1.34221 * 120.00178 * 180.02562 * 22 21 12 25 25 H 1.09004 * 109.47455 * 297.45047 * 1 2 3 26 26 H 1.09000 * 109.47353 * 57.45498 * 1 2 3 27 27 H 1.09010 * 109.46724 * 177.45640 * 1 2 3 28 28 H 1.08993 * 110.48876 * 335.76269 * 4 2 1 29 29 H 1.09015 * 110.48349 * 98.40276 * 4 2 1 30 30 H 1.09000 * 110.75894 * 279.63058 * 5 4 2 31 31 H 1.08997 * 110.91596 * 156.32742 * 5 4 2 32 32 H 1.08996 * 110.48576 * 203.37927 * 6 5 4 33 33 H 1.09001 * 110.59660 * 80.78862 * 6 5 4 34 34 H 1.09000 * 109.47087 * 304.04064 * 9 7 2 35 35 H 1.08991 * 109.46781 * 64.04375 * 9 7 2 36 36 H 0.97003 * 120.00446 * 185.00472 * 16 15 13 37 37 H 1.09004 * 109.47169 * 209.99733 * 21 12 10 38 38 H 1.09005 * 109.46578 * 329.99137 * 21 12 10 39 39 H 0.96707 * 117.00254 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0595 -0.7553 -1.2364 5 6 3.3151 -1.4995 -0.7181 6 6 2.8886 -1.9395 0.7044 7 6 2.0572 -0.7529 1.2340 8 1 2.6860 -0.0942 1.8329 9 6 0.8862 -1.2664 2.0744 10 6 1.4140 -1.9142 3.3286 11 8 2.5993 -1.8688 3.5820 12 7 0.5690 -2.5442 4.1685 13 6 -0.7823 -2.5022 3.9406 14 1 -1.1571 -2.2246 2.9665 15 6 -1.6693 -2.8167 4.9627 16 7 -1.2168 -3.0764 6.1688 17 14 -3.5053 -2.8703 4.6225 18 1 -3.8911 -4.2414 4.2023 19 1 -4.2480 -2.5028 5.8547 20 1 -3.8364 -1.9092 3.5399 21 6 1.0944 -3.2738 5.3252 22 6 1.1784 -2.3451 6.5091 23 8 0.8351 -1.1920 6.3979 24 8 1.6354 -2.7987 7.6868 25 1 -0.3634 0.4737 0.9120 26 1 -0.3634 0.5528 -0.8663 27 1 -0.3633 -1.0268 -0.0456 28 1 1.3160 -1.4664 -1.5964 29 1 2.3306 -0.0533 -2.0252 30 1 4.1719 -0.8271 -0.6739 31 1 3.5380 -2.3665 -1.3400 32 1 3.7647 -2.1017 1.3323 33 1 2.2796 -2.8424 0.6601 34 1 0.2375 -0.4323 2.3418 35 1 0.3191 -1.9978 1.4987 36 1 -1.8278 -3.3665 6.8641 37 1 0.4309 -4.1055 5.5622 38 1 2.0881 -3.6566 5.0925 39 1 1.6714 -2.1658 8.4170 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594358431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:16 Heat of formation + Delta-G solvation = -153.598576 kcal Electronic energy + Delta-G solvation = -21906.376175 eV Core-core repulsion = 18619.867388 eV Total energy + Delta-G solvation = -3286.508787 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.30431 -40.38354 -39.04853 -36.97235 -36.36972 -33.45302 -32.74767 -31.71089 -29.74101 -27.08265 -26.12740 -25.60467 -22.71051 -21.60608 -21.11654 -19.63415 -18.80707 -18.63834 -17.97897 -17.35515 -16.87370 -16.18633 -16.13758 -15.93746 -15.61112 -15.40609 -14.60383 -14.39450 -14.22204 -13.63815 -13.51817 -13.27018 -13.09022 -13.04357 -12.71882 -12.64952 -12.43216 -12.14353 -12.09001 -11.76953 -11.58386 -11.50863 -11.46297 -11.38581 -11.32388 -11.05389 -10.96194 -10.36375 -9.90178 -8.31985 -5.97116 1.43573 1.47621 1.58929 1.79989 1.94854 2.27895 2.56343 2.96797 3.23541 3.75987 3.78055 3.88076 4.28958 4.42908 4.49334 4.52088 4.55547 4.64361 4.74381 4.79121 4.84097 4.88236 4.99436 4.99934 5.02601 5.12989 5.19548 5.22662 5.36325 5.41824 5.48370 5.52793 5.59757 5.65947 5.76355 5.94888 6.35793 7.08708 7.42657 7.52236 7.91345 8.71844 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.018821 B = 0.006849 C = 0.005425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.363831 B = 4087.186436 C = 5159.755114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.071 4.071 8 H 0.047 0.953 9 C -0.101 4.101 10 C 0.456 3.544 11 O -0.626 6.626 12 N -0.451 5.451 13 C -0.335 4.335 14 H 0.119 0.881 15 C -0.012 4.012 16 N -0.914 5.914 17 Si 1.000 3.000 18 H -0.266 1.266 19 H -0.294 1.294 20 H -0.258 1.258 21 C 0.156 3.844 22 C 0.509 3.491 23 O -0.561 6.561 24 O -0.524 6.524 25 H 0.048 0.952 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 0.770 -10.228 10.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.148 4.148 7 C -0.091 4.091 8 H 0.065 0.935 9 C -0.141 4.141 10 C 0.248 3.752 11 O -0.514 6.514 12 N -0.170 5.170 13 C -0.462 4.462 14 H 0.136 0.864 15 C -0.211 4.211 16 N -0.556 5.556 17 Si 0.824 3.176 18 H -0.191 1.191 19 H -0.220 1.220 20 H -0.182 1.182 21 C 0.031 3.969 22 C 0.352 3.648 23 O -0.451 6.451 24 O -0.335 6.335 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.146 0.854 38 H 0.096 0.904 39 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.552 0.822 -10.264 10.414 hybrid contribution -0.809 0.363 1.429 1.682 sum 0.743 1.185 -8.835 8.945 Atomic orbital electron populations 1.21991 0.94588 1.02185 1.01716 1.21780 0.96247 0.99072 0.93711 0.90811 1.22419 0.96916 0.99014 0.96492 1.22487 0.98095 1.00278 0.94856 1.22285 0.98827 0.97096 0.96597 1.21541 0.94947 0.97034 0.95533 0.93474 1.21652 0.99067 1.00636 0.92701 1.21258 0.85925 0.80171 0.87887 1.90487 1.18116 1.64003 1.78780 1.43702 1.07077 1.45062 1.21153 1.20158 0.80036 1.47105 0.98909 0.86381 1.26138 1.04929 0.96213 0.93809 1.69667 1.37122 1.46044 1.02749 0.84789 0.76144 0.79135 0.77511 1.19093 1.21980 1.18216 1.20570 0.99636 0.94107 0.82630 1.23743 0.69765 0.87270 0.83976 1.90505 1.47518 1.22144 1.84980 1.84459 1.78932 1.48328 1.21810 0.93333 0.91288 0.92298 0.90926 0.90111 0.91499 0.90524 0.93793 0.92769 0.89785 0.88602 0.91879 0.85386 0.90390 0.73242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 7.90 71.98 0.57 -2.96 16 2 C -0.09 -2.27 3.50 -10.07 -0.04 -2.31 16 3 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 4 C -0.11 -2.32 6.36 31.67 0.20 -2.12 16 5 C -0.12 -2.81 6.91 31.89 0.22 -2.59 16 6 C -0.11 -3.53 5.46 31.67 0.17 -3.36 16 7 C -0.07 -2.41 2.55 -10.07 -0.03 -2.44 16 8 H 0.05 1.83 7.87 -2.39 -0.02 1.81 16 9 C -0.10 -3.90 2.36 29.85 0.07 -3.83 16 10 C 0.46 22.28 7.33 87.66 0.64 22.93 16 11 O -0.63 -33.38 14.61 -3.06 -0.04 -33.43 16 12 N -0.45 -22.94 2.11 -639.59 -1.35 -24.29 16 13 C -0.34 -16.60 9.27 84.04 0.78 -15.82 16 14 H 0.12 5.31 6.40 -2.91 -0.02 5.29 16 15 C -0.01 -0.60 5.28 84.93 0.45 -0.15 16 16 N -0.91 -47.40 8.20 21.66 0.18 -47.23 16 17 Si 1.00 39.19 29.56 68.60 2.03 41.22 16 18 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.29 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 21 C 0.16 7.78 5.21 85.63 0.45 8.23 16 22 C 0.51 25.92 6.24 71.24 0.44 26.36 16 23 O -0.56 -32.53 16.89 21.97 0.37 -32.16 16 24 O -0.52 -21.73 13.42 -51.33 -0.69 -22.42 16 25 H 0.05 1.28 6.56 -2.38 -0.02 1.26 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.41 6.88 -2.38 -0.02 1.40 16 28 H 0.07 1.43 7.82 -2.39 -0.02 1.41 16 29 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.61 7.74 -2.39 -0.02 1.59 16 33 H 0.05 1.77 7.78 -2.39 -0.02 1.75 16 34 H 0.08 3.28 6.45 -2.39 -0.02 3.27 16 35 H 0.10 3.39 6.36 -2.39 -0.02 3.38 16 36 H 0.27 13.49 8.32 -92.71 -0.77 12.72 16 37 H 0.13 6.39 6.29 -2.38 -0.01 6.37 16 38 H 0.08 3.72 7.50 -2.38 -0.02 3.70 16 39 H 0.41 13.13 9.10 -74.05 -0.67 12.45 16 Total: -1.00 -66.56 310.27 4.81 -61.74 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.39 Total: 34.61 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 3.93 Total: 21.95 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -1.17 Total: -71.52 kcal Atomic # 8 Polarization: -87.64 SS G_CDS: -0.36 Total: -88.00 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -66.56 4.81 -61.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594358431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.855 kcal (2) G-P(sol) polarization free energy of solvation -66.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds