Wall clock time and date at job start Mon Mar 30 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46131 * 2 1 4 4 C 1.53036 * 109.45878 * 240.02562 * 2 1 3 5 5 C 1.53190 * 109.31255 * 178.61384 * 4 2 1 6 6 N 1.46931 * 108.77212 * 54.64200 * 5 4 2 7 7 C 1.34773 * 120.63187 * 126.37222 * 6 5 4 8 8 O 1.21283 * 120.00261 * 173.95285 * 7 6 5 9 9 C 1.50700 * 119.99956 * 353.94718 * 7 6 5 10 10 C 1.53005 * 109.47032 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47032 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99914 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99907 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99872 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47094 * 270.00125 * 15 13 11 17 17 H 1.48506 * 109.47179 * 30.00108 * 15 13 11 18 18 H 1.48504 * 109.47028 * 149.99800 * 15 13 11 19 19 C 1.46929 * 118.73540 * 306.63732 * 6 5 4 20 20 H 1.09001 * 109.58940 * 293.57293 * 19 6 5 21 21 C 1.50700 * 109.58418 * 173.14567 * 19 6 5 22 22 O 1.20820 * 119.99839 * 298.97416 * 21 19 6 23 23 O 1.34233 * 119.99460 * 118.97064 * 21 19 6 24 24 C 1.52762 * 109.00460 * 53.31426 * 19 6 5 25 25 H 1.08993 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46936 * 299.97495 * 1 2 3 27 27 H 1.09005 * 109.46670 * 59.96649 * 1 2 3 28 28 H 1.09009 * 109.49900 * 58.66594 * 4 2 1 29 29 H 1.08999 * 109.53234 * 298.58864 * 4 2 1 30 30 H 1.08999 * 109.58912 * 294.85113 * 5 4 2 31 31 H 1.09000 * 109.70309 * 174.49347 * 5 4 2 32 32 H 1.08997 * 109.47283 * 60.00406 * 9 7 6 33 33 H 1.08999 * 109.47235 * 300.00030 * 9 7 6 34 34 H 1.08997 * 109.47338 * 59.99726 * 10 9 7 35 35 H 1.08999 * 109.46552 * 299.99734 * 10 9 7 36 36 H 0.96999 * 120.00060 * 359.97438 * 14 13 11 37 37 H 0.96703 * 116.99662 * 179.97438 * 23 21 19 38 38 H 1.09004 * 109.55976 * 185.55385 * 24 19 6 39 39 H 1.09001 * 109.38620 * 65.51500 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2642 6 7 4.0678 -1.2490 0.0002 7 6 4.9613 -2.2579 0.0002 8 8 5.4464 -2.6384 1.0447 9 6 5.3578 -2.9134 -1.2975 10 6 6.3767 -4.0204 -1.0193 11 6 6.7736 -4.6755 -2.3171 12 1 6.3426 -4.3360 -3.2474 13 6 7.6879 -5.7076 -2.3171 14 7 8.2139 -6.1200 -1.1844 15 14 8.1804 -6.5192 -3.9259 16 1 7.2686 -7.6574 -4.2055 17 1 8.0883 -5.5287 -5.0285 18 1 9.5758 -7.0165 -3.8225 19 6 3.5671 -0.6923 1.2644 20 1 3.9097 0.3369 1.3716 21 6 4.0751 -1.5196 2.4170 22 8 3.7824 -2.6891 2.4964 23 8 4.8529 -0.9571 3.3553 24 6 2.0398 -0.7207 1.2501 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5134 0.8902 27 1 -0.3633 0.5144 -0.8897 28 1 1.6572 -0.2210 -2.1399 29 1 1.6978 -1.7558 -1.2388 30 1 3.9143 0.3407 -1.3674 31 1 3.9437 -1.2833 -2.0984 32 1 5.8006 -2.1697 -1.9599 33 1 4.4755 -3.3431 -1.7719 34 1 5.9336 -4.7641 -0.3571 35 1 7.2591 -3.5910 -0.5447 36 1 7.9589 -5.6979 -0.3492 37 1 5.1542 -1.5276 4.0756 38 1 1.6572 -0.2205 2.1398 39 1 1.6973 -1.7554 1.2388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594397444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:15 Heat of formation + Delta-G solvation = -144.004809 kcal Electronic energy + Delta-G solvation = -21592.070098 eV Core-core repulsion = 18305.977329 eV Total energy + Delta-G solvation = -3286.092770 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01265 -38.90903 -37.76989 -35.72464 -34.02929 -33.84289 -32.01696 -30.59945 -28.52082 -25.58697 -24.72648 -23.54360 -22.37552 -20.94318 -20.46052 -18.70317 -17.94599 -17.17422 -16.34756 -16.14839 -15.92603 -15.31559 -14.99674 -14.36959 -14.17316 -13.95600 -13.73239 -13.57673 -13.42310 -12.95212 -12.48412 -12.23554 -12.06974 -12.01011 -11.65650 -11.46472 -11.35243 -11.12879 -10.95922 -10.81133 -10.73717 -10.13444 -10.12231 -10.08319 -9.89480 -9.23141 -8.66411 -8.52363 -8.27151 -6.30838 -4.01101 2.35216 2.93336 3.12627 3.26660 3.45598 3.49684 3.65085 4.44167 4.46804 4.56547 4.58027 4.73147 4.94704 5.08291 5.22360 5.26736 5.33610 5.37117 5.42969 5.47069 5.54521 5.59267 5.71458 5.74038 5.84480 5.90786 6.03443 6.06209 6.14309 6.44058 6.70192 6.84764 7.46971 7.52082 7.57678 8.16995 8.22605 8.49109 8.53742 8.92487 9.72886 11.10105 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023287 B = 0.004989 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.082163 B = 5610.989666 C = 6511.051988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.134 4.134 5 C 0.111 3.889 6 N -0.616 5.616 7 C 0.510 3.490 8 O -0.511 6.511 9 C -0.115 4.115 10 C 0.024 3.976 11 C -0.608 4.608 12 H 0.050 0.950 13 C 0.015 3.985 14 N -0.911 5.911 15 Si 1.073 2.927 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.284 1.284 19 C 0.158 3.842 20 H 0.096 0.904 21 C 0.492 3.508 22 O -0.497 6.497 23 O -0.521 6.521 24 C -0.120 4.120 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.272 0.728 37 H 0.410 0.590 38 H 0.079 0.921 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 16.670 2.159 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 H 0.094 0.906 4 C -0.173 4.173 5 C -0.011 4.011 6 N -0.356 5.356 7 C 0.301 3.699 8 O -0.386 6.386 9 C -0.155 4.155 10 C -0.013 4.013 11 C -0.646 4.646 12 H 0.068 0.932 13 C -0.189 4.189 14 N -0.546 5.546 15 Si 0.902 3.098 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.210 1.210 19 C 0.053 3.947 20 H 0.114 0.886 21 C 0.334 3.666 22 O -0.383 6.383 23 O -0.334 6.334 24 C -0.159 4.159 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.083 0.917 37 H 0.268 0.732 38 H 0.097 0.903 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.934 15.178 1.781 20.681 hybrid contribution -0.832 0.901 1.125 1.664 sum -14.766 16.079 2.906 22.023 Atomic orbital electron populations 1.21808 0.94485 1.02194 1.01822 1.21087 0.96084 0.99447 0.94066 0.90627 1.22052 0.95211 1.01973 0.98029 1.21790 0.94070 0.99526 0.85704 1.48316 1.44923 1.37244 1.05073 1.21758 0.77112 0.77738 0.93299 1.90654 1.52934 1.61636 1.33394 1.21716 1.01936 0.99809 0.92028 1.19036 0.92799 0.92033 0.97471 1.22028 1.28756 1.20958 0.92906 0.93215 1.25853 0.93889 0.95308 1.03864 1.70698 1.42633 1.42331 0.98984 0.83496 0.76656 0.75735 0.73955 1.21478 1.21501 1.21000 1.20420 0.94943 0.97043 0.82324 0.88642 1.22401 0.75450 0.86491 0.82268 1.90722 1.55924 1.16653 1.75033 1.84397 1.63728 1.48040 1.37199 1.21900 0.91741 1.03111 0.99111 0.92437 0.92566 0.92310 0.90225 0.90902 0.91127 0.88358 0.89920 0.89837 0.96644 0.96809 0.91704 0.73196 0.90273 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.19 37.16 0.34 -0.66 16 2 C -0.09 -0.71 2.68 -90.58 -0.24 -0.96 16 3 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -1.17 5.36 -26.61 -0.14 -1.32 16 5 C 0.11 1.19 6.35 -3.71 -0.02 1.17 16 6 N -0.62 -9.27 2.98 -166.78 -0.50 -9.77 16 7 C 0.51 10.34 7.38 -10.99 -0.08 10.26 16 8 O -0.51 -12.40 11.75 -21.01 -0.25 -12.65 16 9 C -0.12 -2.42 4.00 -27.88 -0.11 -2.53 16 10 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 11 C -0.61 -17.70 9.11 -34.44 -0.31 -18.01 16 12 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 13 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 14 N -0.91 -29.27 13.65 55.43 0.76 -28.52 16 15 Si 1.07 25.75 29.90 -169.99 -5.08 20.67 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 C 0.16 2.12 3.33 -68.97 -0.23 1.89 16 20 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 21 C 0.49 8.34 4.88 36.01 0.18 8.52 16 22 O -0.50 -10.46 15.33 -26.92 -0.41 -10.87 16 23 O -0.52 -7.53 13.42 -41.13 -0.55 -8.08 16 24 C -0.12 -1.27 4.58 -26.83 -0.12 -1.39 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.10 1.07 5.93 -51.93 -0.31 0.77 16 32 H 0.08 1.56 7.69 -51.93 -0.40 1.16 16 33 H 0.08 1.64 7.94 -51.93 -0.41 1.22 16 34 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 35 H 0.01 0.40 7.96 -51.93 -0.41 -0.01 16 36 H 0.27 8.94 7.22 -40.82 -0.29 8.64 16 37 H 0.41 4.56 9.10 45.56 0.41 4.97 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 1.05 7.92 -51.93 -0.41 0.63 16 LS Contribution 317.00 15.07 4.78 4.78 Total: -1.00 -37.91 317.00 -7.45 -45.36 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -5.24 Total: 1.19 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.95 Total: -2.10 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.26 Total: -38.29 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.21 Total: -31.61 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -5.08 Total: 20.67 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -37.91 -7.45 -45.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594397444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.641 kcal (2) G-P(sol) polarization free energy of solvation -37.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds