Wall clock time and date at job start Mon Mar 30 2020 01:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46131 * 2 1 4 4 C 1.53036 * 109.45878 * 240.02562 * 2 1 3 5 5 C 1.53190 * 109.31255 * 178.61384 * 4 2 1 6 6 N 1.46931 * 108.77212 * 54.64200 * 5 4 2 7 7 C 1.34773 * 120.63187 * 126.37222 * 6 5 4 8 8 O 1.21283 * 120.00261 * 173.95285 * 7 6 5 9 9 C 1.50700 * 119.99956 * 353.94718 * 7 6 5 10 10 C 1.53005 * 109.47032 * 180.02562 * 9 7 6 11 11 C 1.50700 * 109.47032 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99914 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99907 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99872 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47094 * 270.00125 * 15 13 11 17 17 H 1.48506 * 109.47179 * 30.00108 * 15 13 11 18 18 H 1.48504 * 109.47028 * 149.99800 * 15 13 11 19 19 C 1.46929 * 118.73540 * 306.63732 * 6 5 4 20 20 H 1.09001 * 109.58940 * 293.57293 * 19 6 5 21 21 C 1.50700 * 109.58418 * 173.14567 * 19 6 5 22 22 O 1.20820 * 119.99839 * 298.97416 * 21 19 6 23 23 O 1.34233 * 119.99460 * 118.97064 * 21 19 6 24 24 C 1.52762 * 109.00460 * 53.31426 * 19 6 5 25 25 H 1.08993 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46936 * 299.97495 * 1 2 3 27 27 H 1.09005 * 109.46670 * 59.96649 * 1 2 3 28 28 H 1.09009 * 109.49900 * 58.66594 * 4 2 1 29 29 H 1.08999 * 109.53234 * 298.58864 * 4 2 1 30 30 H 1.08999 * 109.58912 * 294.85113 * 5 4 2 31 31 H 1.09000 * 109.70309 * 174.49347 * 5 4 2 32 32 H 1.08997 * 109.47283 * 60.00406 * 9 7 6 33 33 H 1.08999 * 109.47235 * 300.00030 * 9 7 6 34 34 H 1.08997 * 109.47338 * 59.99726 * 10 9 7 35 35 H 1.08999 * 109.46552 * 299.99734 * 10 9 7 36 36 H 0.96999 * 120.00060 * 359.97438 * 14 13 11 37 37 H 0.96703 * 116.99662 * 179.97438 * 23 21 19 38 38 H 1.09004 * 109.55976 * 185.55385 * 24 19 6 39 39 H 1.09001 * 109.38620 * 65.51500 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6887 -1.2642 6 7 4.0678 -1.2490 0.0002 7 6 4.9613 -2.2579 0.0002 8 8 5.4464 -2.6384 1.0447 9 6 5.3578 -2.9134 -1.2975 10 6 6.3767 -4.0204 -1.0193 11 6 6.7736 -4.6755 -2.3171 12 1 6.3426 -4.3360 -3.2474 13 6 7.6879 -5.7076 -2.3171 14 7 8.2139 -6.1200 -1.1844 15 14 8.1804 -6.5192 -3.9259 16 1 7.2686 -7.6574 -4.2055 17 1 8.0883 -5.5287 -5.0285 18 1 9.5758 -7.0165 -3.8225 19 6 3.5671 -0.6923 1.2644 20 1 3.9097 0.3369 1.3716 21 6 4.0751 -1.5196 2.4170 22 8 3.7824 -2.6891 2.4964 23 8 4.8529 -0.9571 3.3553 24 6 2.0398 -0.7207 1.2501 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5134 0.8902 27 1 -0.3633 0.5144 -0.8897 28 1 1.6572 -0.2210 -2.1399 29 1 1.6978 -1.7558 -1.2388 30 1 3.9143 0.3407 -1.3674 31 1 3.9437 -1.2833 -2.0984 32 1 5.8006 -2.1697 -1.9599 33 1 4.4755 -3.3431 -1.7719 34 1 5.9336 -4.7641 -0.3571 35 1 7.2591 -3.5910 -0.5447 36 1 7.9589 -5.6979 -0.3492 37 1 5.1542 -1.5276 4.0756 38 1 1.6572 -0.2205 2.1398 39 1 1.6973 -1.7554 1.2388 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594397444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:15 Heat of formation + Delta-G solvation = -170.680883 kcal Electronic energy + Delta-G solvation = -21593.226860 eV Core-core repulsion = 18305.977329 eV Total energy + Delta-G solvation = -3287.249531 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.29330 -40.26229 -38.93097 -37.04873 -36.01207 -35.08675 -33.36050 -32.24777 -29.46398 -27.33651 -26.01138 -24.51371 -24.18305 -22.27163 -21.45506 -19.98059 -19.28303 -18.98352 -18.06244 -17.42881 -17.19960 -16.66193 -16.19630 -15.63089 -15.44486 -15.23553 -15.12187 -14.95487 -14.44114 -14.18968 -14.08268 -13.91833 -13.58604 -12.88946 -12.78566 -12.72510 -12.53924 -12.39159 -12.23556 -12.09558 -12.02924 -11.86090 -11.71375 -11.44849 -11.28463 -10.90772 -10.65694 -10.58592 -9.84685 -8.72522 -6.44600 1.09169 1.44765 1.53074 1.64194 1.80824 1.93968 2.01421 2.58446 3.14832 3.53755 3.71387 3.77443 3.83477 3.94338 4.05369 4.21197 4.29896 4.31363 4.38170 4.57758 4.64461 4.68920 4.77345 4.87012 4.92295 5.00124 5.08434 5.16527 5.22953 5.30229 5.37585 5.41716 5.51048 5.66259 5.89049 6.09131 6.18264 6.46842 6.91135 7.08312 7.42477 8.67050 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023287 B = 0.004989 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.082163 B = 5610.989666 C = 6511.051988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.082 4.082 3 H 0.102 0.898 4 C -0.131 4.131 5 C 0.100 3.900 6 N -0.605 5.605 7 C 0.502 3.498 8 O -0.566 6.566 9 C -0.103 4.103 10 C 0.029 3.971 11 C -0.617 4.617 12 H 0.070 0.930 13 C -0.046 4.046 14 N -0.940 5.940 15 Si 1.129 2.871 16 H -0.272 1.272 17 H -0.256 1.256 18 H -0.286 1.286 19 C 0.154 3.846 20 H 0.130 0.870 21 C 0.486 3.514 22 O -0.548 6.548 23 O -0.516 6.516 24 C -0.115 4.115 25 H 0.043 0.957 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.112 0.888 29 H 0.051 0.949 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.100 0.900 34 H -0.030 1.030 35 H -0.022 1.022 36 H 0.249 0.751 37 H 0.420 0.580 38 H 0.100 0.900 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.607 19.401 -0.423 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.101 4.101 3 H 0.120 0.880 4 C -0.169 4.169 5 C -0.020 4.020 6 N -0.341 5.341 7 C 0.293 3.707 8 O -0.445 6.445 9 C -0.142 4.142 10 C -0.008 4.008 11 C -0.654 4.654 12 H 0.089 0.911 13 C -0.243 4.243 14 N -0.577 5.577 15 Si 0.948 3.052 16 H -0.198 1.198 17 H -0.180 1.180 18 H -0.212 1.212 19 C 0.050 3.950 20 H 0.148 0.852 21 C 0.330 3.670 22 O -0.438 6.438 23 O -0.329 6.329 24 C -0.153 4.153 25 H 0.062 0.938 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.123 0.877 31 H 0.115 0.885 32 H 0.129 0.871 33 H 0.118 0.882 34 H -0.012 1.012 35 H -0.003 1.003 36 H 0.058 0.942 37 H 0.281 0.719 38 H 0.119 0.881 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.632 17.993 -0.811 23.849 hybrid contribution -0.362 0.125 2.014 2.050 sum -15.993 18.118 1.203 24.197 Atomic orbital electron populations 1.21786 0.93407 1.01752 1.03096 1.21122 0.96864 1.00114 0.91960 0.88009 1.22065 0.93522 1.01388 0.99891 1.22240 0.95547 1.00969 0.83286 1.48293 1.42982 1.35360 1.07513 1.21545 0.78173 0.78948 0.92040 1.90637 1.55385 1.63735 1.34746 1.21474 1.00788 0.98542 0.93435 1.18846 0.93019 0.93011 0.95939 1.22495 1.28267 1.20717 0.93943 0.91136 1.27748 0.93775 0.96227 1.06525 1.70871 1.44376 1.43385 0.99109 0.82830 0.76338 0.75908 0.70092 1.19796 1.18032 1.21201 1.20853 0.96747 0.97471 0.79963 0.85241 1.23262 0.74539 0.86285 0.82932 1.90694 1.57817 1.19098 1.76195 1.84375 1.63038 1.48082 1.37393 1.21941 0.89382 1.02117 1.01860 0.93790 0.91711 0.90656 0.86981 0.93016 0.87668 0.88544 0.87134 0.88218 1.01176 1.00334 0.94172 0.71937 0.88119 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 71.98 0.66 -0.79 16 2 C -0.08 -1.01 2.68 -10.77 -0.03 -1.03 16 3 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.13 -1.81 5.36 30.67 0.16 -1.65 16 5 C 0.10 1.79 6.35 86.36 0.55 2.34 16 6 N -0.60 -17.34 2.98 -799.97 -2.38 -19.72 16 7 C 0.50 20.75 7.38 87.66 0.65 21.39 16 8 O -0.57 -28.96 11.75 22.36 0.26 -28.70 16 9 C -0.10 -4.35 4.00 29.85 0.12 -4.23 16 10 C 0.03 1.70 3.57 29.85 0.11 1.80 16 11 C -0.62 -36.21 9.11 25.60 0.23 -35.98 16 12 H 0.07 3.78 7.74 -2.91 -0.02 3.75 16 13 C -0.05 -2.81 5.46 84.66 0.46 -2.34 16 14 N -0.94 -62.84 13.65 21.45 0.29 -62.55 16 15 Si 1.13 51.03 29.90 68.60 2.05 53.08 16 16 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 17 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 C 0.15 3.88 3.33 44.08 0.15 4.03 16 20 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 21 C 0.49 16.77 4.88 71.24 0.35 17.12 16 22 O -0.55 -24.39 15.33 29.79 0.46 -23.93 16 23 O -0.52 -15.03 13.42 -49.66 -0.67 -15.70 16 24 C -0.11 -2.19 4.58 30.53 0.14 -2.05 16 25 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.79 5.93 -2.39 -0.01 1.78 16 32 H 0.11 4.00 7.69 -2.39 -0.02 3.98 16 33 H 0.10 3.84 7.94 -2.39 -0.02 3.82 16 34 H -0.03 -1.99 7.97 -2.39 -0.02 -2.01 16 35 H -0.02 -1.39 7.96 -2.39 -0.02 -1.41 16 36 H 0.25 17.47 7.22 -92.71 -0.67 16.80 16 37 H 0.42 9.81 9.10 -74.05 -0.67 9.14 16 38 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.05 1.31 7.92 -2.39 -0.02 1.29 16 Total: -1.00 -89.01 317.00 4.03 -84.98 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.47 Total: 13.94 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 3.55 Total: -1.39 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -2.09 Total: -82.27 kcal Atomic # 8 Polarization: -68.39 SS G_CDS: 0.05 Total: -68.33 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.05 Total: 53.08 kcal Total: -89.01 4.03 -84.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594397444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.704 kcal (2) G-P(sol) polarization free energy of solvation -89.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds