Wall clock time and date at job start Mon Mar 30 2020 01:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.50907 * 2 1 4 4 C 1.53100 * 109.53633 * 239.89196 * 2 1 3 5 5 N 1.47014 * 109.25690 * 296.89007 * 4 2 1 6 6 C 1.46909 * 110.99877 * 177.60837 * 5 4 2 7 7 C 1.53001 * 109.46946 * 196.65369 * 6 5 4 8 8 C 1.50702 * 115.54840 * 268.34720 * 7 6 5 9 9 H 1.08004 * 119.99337 * 120.70069 * 8 7 6 10 10 C 1.37873 * 120.00094 * 300.69911 * 8 7 6 11 11 N 1.31515 * 119.99960 * 162.45746 * 10 8 7 12 12 Si 1.86798 * 120.00060 * 342.45475 * 10 8 7 13 13 H 1.48500 * 109.47237 * 84.64168 * 12 10 8 14 14 H 1.48501 * 109.47102 * 204.64516 * 12 10 8 15 15 H 1.48501 * 109.47100 * 324.64315 * 12 10 8 16 16 C 1.53003 * 117.49720 * 122.64180 * 7 6 5 17 17 C 1.52996 * 60.00000 * 252.51131 * 16 7 6 18 18 C 1.47011 * 110.75742 * 301.38707 * 5 4 2 19 19 C 1.53093 * 109.25858 * 58.61153 * 18 5 4 20 20 H 1.09006 * 109.53859 * 63.11011 * 19 18 5 21 21 C 1.50700 * 109.50833 * 183.21795 * 19 18 5 22 22 O 1.20824 * 119.99907 * 114.78877 * 21 19 18 23 23 O 1.34229 * 120.00264 * 294.78531 * 21 19 18 24 24 O 1.43011 * 109.26030 * 303.15831 * 19 18 5 25 25 H 1.09006 * 109.46757 * 294.30391 * 1 2 3 26 26 H 1.08992 * 109.47458 * 54.30415 * 1 2 3 27 27 H 1.08996 * 109.47599 * 174.31127 * 1 2 3 28 28 H 1.09001 * 109.50962 * 56.82773 * 4 2 1 29 29 H 1.09003 * 109.50346 * 176.91580 * 4 2 1 30 30 H 1.08994 * 109.47288 * 316.65556 * 6 5 4 31 31 H 1.08998 * 109.46975 * 76.65730 * 6 5 4 32 32 H 0.96995 * 120.00318 * 179.97438 * 11 10 8 33 33 H 1.08998 * 117.49500 * 0.02562 * 16 7 6 34 34 H 1.08995 * 117.49564 * 145.01521 * 16 7 6 35 35 H 1.09001 * 117.49563 * 252.51612 * 17 16 7 36 36 H 1.08997 * 117.50361 * 107.48826 * 17 16 7 37 37 H 1.09011 * 109.50388 * 298.68577 * 18 5 4 38 38 H 1.08990 * 109.51221 * 178.55393 * 18 5 4 39 39 H 0.96702 * 117.00322 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2482 5 7 1.6125 -2.1291 -1.2041 6 6 2.0359 -2.8471 -2.4139 7 6 1.2425 -4.1495 -2.5378 8 6 1.8780 -5.3604 -1.9047 9 1 1.3581 -5.8976 -1.1252 10 6 3.1230 -5.7824 -2.3205 11 7 3.8264 -6.5986 -1.5664 12 14 3.8106 -5.1950 -3.9549 13 1 4.4680 -3.8763 -3.7702 14 1 4.8047 -6.1779 -4.4557 15 1 2.7056 -5.0637 -4.9383 16 6 0.4325 -4.3641 -3.8180 17 6 -0.2840 -4.0528 -2.5025 18 6 2.1201 -2.7913 0.0063 19 6 1.6074 -2.0468 1.2418 20 1 0.5196 -2.1069 1.2784 21 6 2.1880 -2.6729 2.4836 22 8 2.9467 -2.0415 3.1803 23 8 1.8621 -3.9320 2.8157 24 8 2.0076 -0.6759 1.1663 25 1 -0.3633 0.4230 0.9367 26 1 -0.3634 0.5996 -0.8345 27 1 -0.3634 -1.0225 -0.1019 28 1 1.6339 -0.2462 -2.1390 29 1 3.1306 -0.6759 -1.2758 30 1 1.8513 -2.2245 -3.2892 31 1 3.0998 -3.0747 -2.3477 32 1 4.7021 -6.8958 -1.8590 33 1 0.4653 -3.5777 -4.5720 34 1 0.3593 -5.3813 -4.2026 35 1 -0.8287 -4.8653 -2.0216 36 1 -0.7231 -3.0614 -2.3909 37 1 3.2101 -2.7771 -0.0009 38 1 1.7691 -3.8229 0.0312 39 1 2.2599 -4.2907 3.6208 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599865404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:36 Heat of formation + Delta-G solvation = -118.314211 kcal Electronic energy + Delta-G solvation = -22252.440682 eV Core-core repulsion = 18967.461940 eV Total energy + Delta-G solvation = -3284.978742 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.78648 -40.46139 -38.74220 -37.20194 -35.91730 -34.24070 -33.53156 -30.71936 -28.53315 -27.26767 -26.50650 -24.19676 -23.13003 -22.79579 -20.68678 -20.49629 -19.32553 -18.57853 -17.96179 -17.20351 -17.13122 -16.97961 -16.35798 -15.80713 -15.68701 -15.37834 -15.03622 -14.94409 -14.69241 -14.29031 -13.85937 -13.36122 -13.17277 -12.96784 -12.77451 -12.71685 -12.56499 -12.40472 -12.26000 -12.11969 -11.96309 -11.80178 -11.38822 -11.22874 -10.92768 -10.73532 -10.47520 -10.14754 -9.31485 -8.28303 -6.22652 0.99192 1.31521 1.39649 1.51054 1.58577 2.38734 2.67338 3.00017 3.15468 3.60375 3.67859 3.87171 3.94981 4.00445 4.14891 4.24955 4.35079 4.45523 4.48336 4.59282 4.64672 4.70059 4.81925 4.88189 4.94028 5.05683 5.08771 5.13894 5.26686 5.43921 5.46792 5.49232 5.65737 5.76062 5.94898 6.01953 6.16518 6.40177 6.80788 6.89522 7.39724 8.86578 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017870 B = 0.007922 C = 0.006570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.482657 B = 3533.566285 C = 4260.616766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.090 3.910 3 H 0.134 0.866 4 C 0.011 3.989 5 N -0.508 5.508 6 C 0.093 3.907 7 C -0.021 4.021 8 C -0.475 4.475 9 H 0.034 0.966 10 C 0.027 3.973 11 N -0.937 5.937 12 Si 0.917 3.083 13 H -0.272 1.272 14 H -0.302 1.302 15 H -0.230 1.230 16 C -0.193 4.193 17 C -0.142 4.142 18 C 0.050 3.950 19 C 0.110 3.890 20 H 0.125 0.875 21 C 0.493 3.507 22 O -0.535 6.535 23 O -0.501 6.501 24 O -0.380 6.380 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.010 0.990 32 H 0.261 0.739 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.105 0.895 37 H 0.009 0.991 38 H 0.097 0.903 39 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.400 12.901 0.895 14.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.033 3.967 3 H 0.151 0.849 4 C -0.117 4.117 5 N -0.232 5.232 6 C -0.034 4.034 7 C -0.023 4.023 8 C -0.513 4.513 9 H 0.052 0.948 10 C -0.171 4.171 11 N -0.577 5.577 12 Si 0.742 3.258 13 H -0.198 1.198 14 H -0.229 1.229 15 H -0.153 1.153 16 C -0.231 4.231 17 C -0.179 4.179 18 C -0.079 4.079 19 C 0.051 3.949 20 H 0.143 0.857 21 C 0.335 3.665 22 O -0.424 6.424 23 O -0.315 6.315 24 O -0.300 6.300 25 H 0.083 0.917 26 H 0.107 0.893 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.044 0.956 30 H 0.101 0.899 31 H 0.029 0.971 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.123 0.877 37 H 0.027 0.973 38 H 0.115 0.885 39 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -7.609 13.205 0.903 15.268 hybrid contribution 2.069 -0.938 -0.109 2.275 sum -5.540 12.267 0.794 13.484 Atomic orbital electron populations 1.22274 0.93631 1.03690 1.03304 1.22662 0.95942 0.96088 0.81996 0.84890 1.23043 0.98205 0.89469 1.00966 1.62212 1.58338 1.01522 1.01121 1.21874 0.95860 0.94149 0.91545 1.19208 0.91601 0.92840 0.98622 1.20408 1.01254 1.10569 1.19052 0.94801 1.25640 0.96798 0.95215 0.99447 1.70121 1.12193 1.37431 1.37911 0.86229 0.79021 0.77643 0.82884 1.19768 1.22913 1.15299 1.23127 1.07605 1.00935 0.91447 1.22573 0.94323 1.01437 0.99591 1.22416 0.96156 1.00003 0.89303 1.21354 1.00871 0.83403 0.89283 0.85748 1.23009 0.77739 0.79862 0.85860 1.90678 1.34763 1.63765 1.53209 1.84520 1.69054 1.28503 1.49381 1.88036 1.76414 1.20567 1.44963 0.91693 0.89254 0.91770 0.86713 0.95625 0.89927 0.97130 0.92972 0.88825 0.91173 0.91306 0.87722 0.97287 0.88492 0.70562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.29 8.79 71.98 0.63 -2.66 16 2 C 0.09 2.10 3.92 30.63 0.12 2.22 16 3 H 0.13 2.43 8.14 -2.39 -0.02 2.41 16 4 C 0.01 0.29 5.03 86.31 0.43 0.73 16 5 N -0.51 -16.84 3.72 -895.21 -3.33 -20.17 16 6 C 0.09 3.54 4.21 86.30 0.36 3.90 16 7 C -0.02 -0.90 0.66 -52.93 -0.04 -0.94 16 8 C -0.48 -25.27 7.70 25.60 0.20 -25.07 16 9 H 0.03 2.04 8.06 -2.91 -0.02 2.01 16 10 C 0.03 1.52 5.26 84.65 0.45 1.97 16 11 N -0.94 -56.77 13.96 21.45 0.30 -56.47 16 12 Si 0.92 42.67 25.52 68.60 1.75 44.43 16 13 H -0.27 -12.25 6.72 99.48 0.67 -11.58 16 14 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 15 H -0.23 -9.73 6.26 99.48 0.62 -9.11 16 16 C -0.19 -7.18 8.31 30.59 0.25 -6.93 16 17 C -0.14 -5.10 9.71 30.59 0.30 -4.80 16 18 C 0.05 1.91 4.62 86.31 0.40 2.31 16 19 C 0.11 3.57 2.93 29.88 0.09 3.66 16 20 H 0.13 3.52 6.63 -2.38 -0.02 3.50 16 21 C 0.49 16.81 7.66 71.24 0.55 17.36 16 22 O -0.53 -20.89 17.27 28.38 0.49 -20.40 16 23 O -0.50 -14.65 13.42 -51.41 -0.69 -15.34 16 24 O -0.38 -12.03 9.82 -129.98 -1.28 -13.30 16 25 H 0.06 1.16 8.14 -2.38 -0.02 1.15 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.44 6.28 -2.39 -0.02 1.42 16 28 H 0.11 2.37 8.04 -2.39 -0.02 2.35 16 29 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.08 2.66 7.64 -2.39 -0.02 2.65 16 31 H 0.01 0.46 5.66 -2.39 -0.01 0.45 16 32 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 33 H 0.09 2.97 8.03 -2.39 -0.02 2.96 16 34 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 37 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 38 H 0.10 4.32 6.22 -2.39 -0.01 4.31 16 39 H 0.43 8.32 9.10 -74.06 -0.67 7.64 16 Total: -1.00 -69.02 311.70 1.25 -67.77 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.26 Total: 21.74 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 3.74 Total: -8.25 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.03 Total: -76.64 kcal Atomic # 8 Polarization: -47.57 SS G_CDS: -1.48 Total: -49.05 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 1.75 Total: 44.43 kcal Total: -69.02 1.25 -67.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599865404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.543 kcal (2) G-P(sol) polarization free energy of solvation -69.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds