Wall clock time and date at job start Mon Mar 30 2020 01:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.50554 * 2 1 4 4 C 1.53094 * 109.50505 * 120.08979 * 2 1 3 5 5 N 1.47016 * 109.25955 * 176.78605 * 4 2 1 6 6 C 1.46901 * 111.00212 * 177.60580 * 5 4 2 7 7 C 1.52997 * 109.47026 * 176.72120 * 6 5 4 8 8 C 1.50700 * 115.55142 * 53.74077 * 7 6 5 9 9 H 1.07994 * 120.00072 * 215.23382 * 8 7 6 10 10 C 1.37875 * 119.99645 * 35.51176 * 8 7 6 11 11 N 1.31511 * 120.00432 * 357.07651 * 10 8 7 12 12 Si 1.86803 * 120.00020 * 177.07414 * 10 8 7 13 13 H 1.48502 * 109.46928 * 354.99872 * 12 10 8 14 14 H 1.48499 * 109.47168 * 114.99588 * 12 10 8 15 15 H 1.48504 * 109.47034 * 234.99871 * 12 10 8 16 16 C 1.53005 * 117.49838 * 199.41387 * 7 6 5 17 17 C 1.53004 * 117.50052 * 268.07236 * 7 6 5 18 18 C 1.47012 * 110.75034 * 301.38237 * 5 4 2 19 19 C 1.53098 * 109.25738 * 58.61652 * 18 5 4 20 20 H 1.08997 * 109.51119 * 63.08359 * 19 18 5 21 21 C 1.50702 * 109.54405 * 183.19551 * 19 18 5 22 22 O 1.20828 * 120.00432 * 114.63728 * 21 19 18 23 23 O 1.34235 * 120.00100 * 294.63952 * 21 19 18 24 24 O 1.43013 * 109.50644 * 239.87390 * 2 1 3 25 25 H 1.08997 * 109.47488 * 299.91002 * 1 2 3 26 26 H 1.09000 * 109.46970 * 59.91209 * 1 2 3 27 27 H 1.09009 * 109.47021 * 179.91024 * 1 2 3 28 28 H 1.09001 * 109.51098 * 56.84950 * 4 2 1 29 29 H 1.08997 * 109.54140 * 296.74091 * 4 2 1 30 30 H 1.09004 * 109.46877 * 56.72160 * 6 5 4 31 31 H 1.08995 * 109.46893 * 296.72218 * 6 5 4 32 32 H 0.97005 * 120.00660 * 184.99814 * 11 10 8 33 33 H 1.09002 * 117.49731 * 215.00419 * 16 7 6 34 34 H 1.09001 * 117.49862 * 0.02562 * 16 7 6 35 35 H 1.09003 * 117.49637 * 359.97438 * 17 7 6 36 36 H 1.08999 * 117.50062 * 144.97660 * 17 7 6 37 37 H 1.09001 * 109.50754 * 178.54925 * 18 5 4 38 38 H 1.08999 * 109.50970 * 298.68041 * 18 5 4 39 39 H 0.96695 * 117.00505 * 185.01306 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0412 -0.7235 1.2486 5 7 3.5093 -0.7880 1.2048 6 6 4.0446 -1.4260 2.4149 7 6 5.5650 -1.5488 2.2966 8 6 6.2986 -0.2686 1.9897 9 1 7.1761 -0.2866 1.3605 10 6 5.8527 0.9247 2.5170 11 7 4.7548 0.9547 3.2404 12 14 6.8081 2.4992 2.2040 13 1 8.0598 2.1811 1.4710 14 1 5.9808 3.4269 1.3915 15 1 7.1431 3.1410 3.5006 16 6 6.2644 -2.5640 3.2029 17 6 6.1254 -2.8434 1.7043 18 6 3.9639 -1.4884 -0.0052 19 6 3.4335 -0.7572 -1.2412 20 1 3.8534 0.2480 -1.2777 21 6 3.8298 -1.5134 -2.4831 22 8 2.9815 -2.0203 -3.1784 23 8 5.1253 -1.6240 -2.8168 24 8 2.0075 -0.6766 -1.1660 25 1 -0.3634 0.5124 0.8907 26 1 -0.3633 0.5152 -0.8892 27 1 -0.3633 -1.0278 -0.0016 28 1 1.6331 -1.7339 1.2766 29 1 1.7272 -0.1795 2.1394 30 1 3.6075 -2.4184 2.5261 31 1 3.7956 -0.8197 3.2857 32 1 4.4012 1.8031 3.5505 33 1 7.2551 -2.3058 3.5772 34 1 5.6413 -3.1447 3.8830 35 1 5.4108 -3.6079 1.3993 36 1 7.0243 -2.7692 1.0924 37 1 5.0536 -1.5020 -0.0301 38 1 3.5866 -2.5110 0.0027 39 1 5.3264 -2.0532 -3.6596 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599927181.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:38 Heat of formation + Delta-G solvation = -111.508492 kcal Electronic energy + Delta-G solvation = -22299.585377 eV Core-core repulsion = 19014.901754 eV Total energy + Delta-G solvation = -3284.683624 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.67871 -40.31460 -38.64617 -37.16248 -35.67337 -34.00207 -33.92444 -30.44706 -28.01201 -27.16440 -26.43819 -23.59054 -23.01620 -22.67672 -21.34473 -20.70726 -19.16637 -18.24585 -17.72818 -17.34492 -17.13929 -16.64835 -16.38406 -15.95451 -15.56877 -15.42960 -14.89992 -14.48618 -14.35429 -13.68870 -13.51816 -13.24050 -13.13614 -13.02848 -12.80116 -12.68040 -12.50973 -12.43577 -12.22321 -12.14620 -11.98331 -11.80893 -11.37778 -11.24818 -10.77589 -10.66937 -10.38517 -9.97512 -8.90318 -7.78135 -5.94290 1.01563 1.48257 1.53594 1.56319 1.60634 2.55272 2.82280 3.13851 3.35511 3.73951 3.76905 3.91924 4.02892 4.10565 4.20182 4.36426 4.39192 4.49240 4.53490 4.70707 4.72887 4.80906 4.85236 4.92462 4.95091 5.00516 5.07840 5.16584 5.27471 5.40257 5.48466 5.55971 5.71974 6.00798 6.11594 6.35903 6.48194 6.63769 6.93718 7.03583 7.67476 9.14526 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.007906 C = 0.007298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.835264 B = 3540.629761 C = 3835.789496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.091 3.909 3 H 0.066 0.934 4 C 0.028 3.972 5 N -0.501 5.501 6 C 0.121 3.879 7 C 0.035 3.965 8 C -0.492 4.492 9 H 0.043 0.957 10 C 0.053 3.947 11 N -0.878 5.878 12 Si 0.937 3.063 13 H -0.277 1.277 14 H -0.283 1.283 15 H -0.289 1.289 16 C -0.207 4.207 17 C -0.199 4.199 18 C 0.048 3.952 19 C 0.104 3.896 20 H 0.106 0.894 21 C 0.503 3.497 22 O -0.531 6.531 23 O -0.497 6.497 24 O -0.379 6.379 25 H 0.094 0.906 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.087 0.913 30 H -0.016 1.016 31 H 0.101 0.899 32 H 0.255 0.745 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.018 0.982 39 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -1.977 -6.381 8.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.034 3.966 3 H 0.084 0.916 4 C -0.100 4.100 5 N -0.225 5.225 6 C -0.006 4.006 7 C 0.034 3.966 8 C -0.529 4.529 9 H 0.061 0.939 10 C -0.149 4.149 11 N -0.515 5.515 12 Si 0.765 3.235 13 H -0.202 1.202 14 H -0.209 1.209 15 H -0.216 1.216 16 C -0.246 4.246 17 C -0.236 4.236 18 C -0.080 4.080 19 C 0.044 3.956 20 H 0.123 0.877 21 C 0.345 3.655 22 O -0.420 6.420 23 O -0.312 6.312 24 O -0.299 6.299 25 H 0.113 0.887 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.106 0.894 30 H 0.002 0.998 31 H 0.119 0.881 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.037 0.963 39 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -4.989 -1.407 -6.187 8.071 hybrid contribution 0.665 -0.344 -0.319 0.814 sum -4.323 -1.752 -6.506 8.006 Atomic orbital electron populations 1.21721 0.90195 1.03232 1.03857 1.22408 0.96365 0.95136 0.82678 0.91624 1.22792 0.88764 0.99048 0.99419 1.61919 1.06915 1.52398 1.01241 1.21595 0.93040 0.92565 0.93410 1.19104 0.91667 0.88301 0.97534 1.20430 1.11160 0.91300 1.30008 0.93893 1.25247 0.95340 1.00256 0.94075 1.69892 1.20845 1.25198 1.35583 0.85857 0.79146 0.81323 0.77183 1.20217 1.20862 1.21567 1.23024 1.02033 1.07256 0.92287 1.22938 1.02822 1.02157 0.95721 1.22488 1.02503 0.93577 0.89467 1.21399 0.83632 0.99996 0.90536 0.87656 1.22692 0.80581 0.76746 0.85522 1.90684 1.52566 1.45434 1.53359 1.84513 1.25749 1.75097 1.45811 1.87931 1.18151 1.79272 1.44503 0.88705 0.90955 0.92011 0.95508 0.89441 0.99793 0.88089 0.93452 0.90881 0.90792 0.90729 0.90411 0.88114 0.96342 0.70366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.57 71.98 0.69 -2.47 16 2 C 0.09 2.88 3.43 30.63 0.10 2.98 16 3 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.03 0.99 4.95 86.31 0.43 1.42 16 5 N -0.50 -20.65 4.20 -895.23 -3.76 -24.41 16 6 C 0.12 5.39 4.06 86.30 0.35 5.74 16 7 C 0.03 1.60 1.15 -52.93 -0.06 1.54 16 8 C -0.49 -25.03 8.24 25.60 0.21 -24.82 16 9 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16 10 C 0.05 2.69 5.29 84.65 0.45 3.13 16 11 N -0.88 -44.90 10.18 21.45 0.22 -44.68 16 12 Si 0.94 41.46 29.54 68.60 2.03 43.49 16 13 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 15 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 16 C -0.21 -8.89 9.96 30.62 0.30 -8.58 16 17 C -0.20 -8.13 8.26 30.62 0.25 -7.87 16 18 C 0.05 1.87 4.13 86.31 0.36 2.23 16 19 C 0.10 3.65 3.33 29.88 0.10 3.75 16 20 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 21 C 0.50 16.25 7.66 71.24 0.55 16.79 16 22 O -0.53 -19.62 17.27 28.37 0.49 -19.13 16 23 O -0.50 -12.55 13.42 -51.46 -0.69 -13.24 16 24 O -0.38 -13.47 9.65 -129.98 -1.25 -14.73 16 25 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.09 3.03 8.14 -2.39 -0.02 3.02 16 30 H -0.02 -0.68 8.08 -2.38 -0.02 -0.70 16 31 H 0.10 4.99 5.96 -2.39 -0.01 4.98 16 32 H 0.26 12.66 8.32 -92.70 -0.77 11.89 16 33 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 35 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.10 4.19 5.58 -2.39 -0.01 4.17 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.43 6.08 9.10 -74.06 -0.67 5.41 16 Total: -1.00 -60.05 318.15 1.13 -58.92 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.37 Total: 19.95 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 3.73 Total: -6.16 kcal Atomic # 7 Polarization: -65.55 SS G_CDS: -3.54 Total: -69.09 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -1.46 Total: -47.10 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -60.05 1.13 -58.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599927181.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.591 kcal (2) G-P(sol) polarization free energy of solvation -60.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds