Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.34779 * 119.99793 * 274.99565 * 12 2 1 14 14 O 1.21279 * 120.00185 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99614 * 179.97438 * 13 12 2 16 16 C 1.50697 * 109.46997 * 60.00272 * 15 13 12 17 17 O 1.20834 * 120.00194 * 119.99846 * 16 15 13 18 18 O 1.34228 * 120.00600 * 299.99850 * 16 15 13 19 19 C 1.52998 * 109.47376 * 300.00172 * 15 13 12 20 20 C 1.52995 * 109.46974 * 300.00207 * 19 15 13 21 21 C 1.53006 * 109.47375 * 299.99818 * 20 19 15 22 22 C 1.53002 * 109.46651 * 59.99923 * 21 20 19 23 23 C 1.52995 * 109.47294 * 300.00127 * 22 21 20 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 28 28 H 0.97004 * 120.00223 * 94.99655 * 12 2 1 29 29 H 0.96696 * 117.00747 * 180.02562 * 18 16 15 30 30 H 1.08999 * 109.46966 * 59.99899 * 19 15 13 31 31 H 1.09001 * 109.47089 * 179.97438 * 19 15 13 32 32 H 1.09002 * 109.46954 * 180.02562 * 20 19 15 33 33 H 1.09001 * 109.47464 * 59.99922 * 20 19 15 34 34 H 1.09001 * 109.46909 * 300.00443 * 21 20 19 35 35 H 1.08993 * 109.47299 * 180.02562 * 21 20 19 36 36 H 1.09005 * 109.46374 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47039 * 60.00600 * 22 21 20 38 38 H 1.09001 * 109.47464 * 300.00214 * 23 22 21 39 39 H 1.09002 * 109.46954 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6489 -0.7288 3.5877 16 6 4.0301 -1.2716 3.3262 17 8 4.9605 -0.9093 4.0068 18 8 4.2271 -2.1576 2.3373 19 6 1.7043 -1.8823 3.9314 20 6 0.3019 -1.3312 4.1969 21 6 0.3535 -0.3480 5.3681 22 6 1.2982 0.8054 5.0243 23 6 2.7005 0.2543 4.7589 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7087 1.1612 -3.4844 28 1 2.2490 -1.6318 1.1526 29 1 5.1304 -2.4776 2.2079 30 1 1.6675 -2.5827 3.0970 31 1 2.0675 -2.3965 4.8212 32 1 -0.3709 -2.1530 4.4422 33 1 -0.0611 -0.8173 3.3068 34 1 0.7165 -0.8620 6.2582 35 1 -0.6456 0.0442 5.5575 36 1 1.3352 1.5056 5.8590 37 1 0.9352 1.3194 4.1343 38 1 3.0635 -0.2596 5.6490 39 1 3.3736 1.0761 4.5144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603118457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = -152.300380 kcal Electronic energy + Delta-G solvation = -22236.773208 eV Core-core repulsion = 18950.320715 eV Total energy + Delta-G solvation = -3286.452493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13573 -39.10978 -37.00736 -36.04836 -34.81527 -32.63479 -31.48678 -30.60409 -28.67343 -25.28006 -24.65610 -22.76637 -22.41483 -20.98259 -20.03782 -19.02993 -18.07574 -17.14470 -16.66670 -15.88042 -15.34567 -15.11734 -14.69373 -14.31666 -14.06361 -13.80057 -13.57913 -13.12349 -12.67554 -12.39886 -12.31962 -12.14639 -12.01440 -11.63517 -11.49833 -11.10671 -11.08304 -10.94347 -10.86062 -10.73082 -10.44153 -10.32226 -10.23667 -10.14957 -10.07665 -9.07046 -8.92543 -8.55750 -7.94076 -6.13967 -4.22837 2.13875 2.81378 3.22599 3.30612 3.33181 3.48249 3.93746 4.34663 4.47649 4.70592 4.94326 5.15476 5.18655 5.23455 5.35095 5.46700 5.51062 5.56102 5.66443 5.84400 5.94460 6.06390 6.18068 6.26948 6.34456 6.37731 6.52352 6.71136 6.80406 6.94822 7.11714 7.41239 7.53297 7.67853 7.88982 7.89868 8.12606 8.61159 8.74839 9.04758 9.44497 10.92092 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.006217 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.733478 B = 4502.622401 C = 5099.987306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.532 4.532 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.695 5.695 13 C 0.516 3.484 14 O -0.536 6.536 15 C -0.072 4.072 16 C 0.494 3.506 17 O -0.511 6.511 18 O -0.506 6.506 19 C -0.102 4.102 20 C -0.122 4.122 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.079 4.079 24 H 0.015 0.985 25 H 0.090 0.910 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.395 0.605 29 H 0.412 0.588 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 -6.744 12.704 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.343 5.343 13 C 0.299 3.701 14 O -0.414 6.414 15 C -0.077 4.077 16 C 0.336 3.664 17 O -0.399 6.399 18 O -0.318 6.318 19 C -0.140 4.140 20 C -0.160 4.160 21 C -0.156 4.156 22 C -0.171 4.171 23 C -0.117 4.117 24 H 0.034 0.966 25 H 0.109 0.891 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.229 0.771 29 H 0.271 0.729 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.088 0.912 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.459 -5.541 12.787 13.943 hybrid contribution 1.143 -1.179 -1.014 1.930 sum 1.601 -6.720 11.773 13.650 Atomic orbital electron populations 1.22073 0.98289 0.99178 1.00949 1.18794 0.91111 0.93948 0.79925 0.93387 1.21255 1.32334 1.13230 0.90204 0.91895 1.24882 0.94821 0.94955 0.99051 1.69906 1.35952 1.22494 1.23781 0.86400 0.78616 0.79536 0.82581 1.19717 1.20876 1.20915 1.46583 1.63774 1.14010 1.09938 1.19590 0.79496 0.87195 0.83862 1.90606 1.51325 1.15452 1.84061 1.21010 0.89914 0.98394 0.98345 1.23055 0.91187 0.75592 0.76599 1.90693 1.44055 1.57269 1.47836 1.84521 1.38781 1.56760 1.51727 1.21560 0.94730 0.95019 1.02651 1.21574 0.95413 0.99180 0.99789 1.21561 0.99798 0.96689 0.97575 1.21834 0.93910 0.97720 1.03618 1.21216 0.98794 0.97346 0.94306 0.96607 0.89104 0.95387 0.92631 0.77124 0.72923 0.90083 0.90750 0.91261 0.90856 0.92395 0.91880 0.91946 0.88249 0.91240 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.26 37.16 0.34 -3.18 16 2 C 0.26 6.57 2.56 -69.08 -0.18 6.39 16 3 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 4 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.70 -14.20 4.73 -54.93 -0.26 -14.46 16 13 C 0.52 10.07 4.92 -10.98 -0.05 10.01 16 14 O -0.54 -12.16 13.32 5.56 0.07 -12.08 16 15 C -0.07 -1.11 0.57 -156.81 -0.09 -1.20 16 16 C 0.49 7.54 6.91 36.00 0.25 7.79 16 17 O -0.51 -8.75 16.74 -18.76 -0.31 -9.07 16 18 O -0.51 -6.42 11.78 -39.25 -0.46 -6.88 16 19 C -0.10 -1.27 4.57 -26.73 -0.12 -1.39 16 20 C -0.12 -1.52 5.70 -26.73 -0.15 -1.67 16 21 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 22 C -0.13 -1.86 5.63 -26.73 -0.15 -2.01 16 23 C -0.08 -1.17 3.66 -26.73 -0.10 -1.26 16 24 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.39 7.28 6.63 -40.82 -0.27 7.00 16 29 H 0.41 3.36 9.10 45.56 0.41 3.78 16 30 H 0.08 0.98 7.54 -51.93 -0.39 0.59 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.11 7.22 -51.93 -0.37 0.74 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.70 5.51 -51.93 -0.29 1.42 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 39 H 0.08 1.26 8.06 -51.93 -0.42 0.84 16 LS Contribution 311.32 15.07 4.69 4.69 Total: -1.00 -30.91 311.32 -6.42 -37.33 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -4.96 Total: 9.62 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.80 Total: -0.60 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.37 Total: -38.43 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.70 Total: -28.03 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.91 -6.42 -37.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.968 kcal (2) G-P(sol) polarization free energy of solvation -30.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds