Wall clock time and date at job start Mon Mar 30 2020 01:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50703 * 109.46912 * 239.99922 * 2 1 3 5 5 H 1.08003 * 119.99742 * 240.00283 * 4 2 1 6 6 C 1.37873 * 119.99873 * 60.00145 * 4 2 1 7 7 N 1.31509 * 120.00433 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99975 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46979 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47371 * 119.99948 * 8 6 4 11 11 H 1.48496 * 109.47443 * 240.00340 * 8 6 4 12 12 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 13 13 C 1.34779 * 119.99793 * 274.99565 * 12 2 1 14 14 O 1.21279 * 120.00185 * 0.02562 * 13 12 2 15 15 C 1.50702 * 119.99614 * 179.97438 * 13 12 2 16 16 C 1.50697 * 109.46997 * 60.00272 * 15 13 12 17 17 O 1.20834 * 120.00194 * 119.99846 * 16 15 13 18 18 O 1.34228 * 120.00600 * 299.99850 * 16 15 13 19 19 C 1.52998 * 109.47376 * 300.00172 * 15 13 12 20 20 C 1.52995 * 109.46974 * 300.00207 * 19 15 13 21 21 C 1.53006 * 109.47375 * 299.99818 * 20 19 15 22 22 C 1.53002 * 109.46651 * 59.99923 * 21 20 19 23 23 C 1.52995 * 109.47294 * 300.00127 * 22 21 20 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 0.97001 * 120.00323 * 179.97438 * 7 6 4 28 28 H 0.97004 * 120.00223 * 94.99655 * 12 2 1 29 29 H 0.96696 * 117.00747 * 180.02562 * 18 16 15 30 30 H 1.08999 * 109.46966 * 59.99899 * 19 15 13 31 31 H 1.09001 * 109.47089 * 179.97438 * 19 15 13 32 32 H 1.09002 * 109.46954 * 180.02562 * 20 19 15 33 33 H 1.09001 * 109.47464 * 59.99922 * 20 19 15 34 34 H 1.09001 * 109.46909 * 300.00443 * 21 20 19 35 35 H 1.08993 * 109.47299 * 180.02562 * 21 20 19 36 36 H 1.09005 * 109.46374 * 180.02562 * 22 21 20 37 37 H 1.09001 * 109.47039 * 60.00600 * 22 21 20 38 38 H 1.09001 * 109.47464 * 300.00214 * 23 22 21 39 39 H 1.09002 * 109.46954 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3224 -1.1196 -4.0080 9 1 3.1473 -2.2864 -3.6038 10 1 1.1677 -1.5866 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0183 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3571 14 8 1.8583 1.1584 2.4117 15 6 2.6489 -0.7288 3.5877 16 6 4.0301 -1.2716 3.3262 17 8 4.9605 -0.9093 4.0068 18 8 4.2271 -2.1576 2.3373 19 6 1.7043 -1.8823 3.9314 20 6 0.3019 -1.3312 4.1969 21 6 0.3535 -0.3480 5.3681 22 6 1.2982 0.8054 5.0243 23 6 2.7005 0.2543 4.7589 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7087 1.1612 -3.4844 28 1 2.2490 -1.6318 1.1526 29 1 5.1304 -2.4776 2.2079 30 1 1.6675 -2.5827 3.0970 31 1 2.0675 -2.3965 4.8212 32 1 -0.3709 -2.1530 4.4422 33 1 -0.0611 -0.8173 3.3068 34 1 0.7165 -0.8620 6.2582 35 1 -0.6456 0.0442 5.5575 36 1 1.3352 1.5056 5.8590 37 1 0.9352 1.3194 4.1343 38 1 3.0635 -0.2596 5.6490 39 1 3.3736 1.0761 4.5144 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603118457.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:22 Heat of formation + Delta-G solvation = -173.494848 kcal Electronic energy + Delta-G solvation = -22237.692269 eV Core-core repulsion = 18950.320715 eV Total energy + Delta-G solvation = -3287.371554 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.41870 -40.46994 -38.33430 -37.20553 -36.64405 -34.44467 -32.81603 -31.71623 -30.47095 -27.32947 -25.81059 -24.12779 -23.70600 -22.25009 -21.59871 -20.57377 -19.27051 -18.55906 -18.11191 -17.43375 -17.10862 -16.50315 -16.10447 -15.72808 -15.35917 -15.09390 -14.92030 -14.59513 -14.29349 -13.80209 -13.65236 -13.43653 -13.19704 -13.14072 -12.92948 -12.87271 -12.72570 -12.63495 -12.26706 -12.12722 -12.03451 -11.95230 -11.59518 -11.22416 -11.12830 -11.07367 -10.65733 -10.42553 -9.73880 -8.16961 -6.33928 0.90092 1.44531 1.45956 1.52288 1.57746 2.13356 2.32380 2.54103 3.13777 3.31028 3.58553 3.85156 4.00056 4.18260 4.25145 4.35722 4.45991 4.53137 4.64903 4.76577 4.81375 4.92663 4.99509 5.02376 5.10669 5.19426 5.24771 5.31482 5.35245 5.43043 5.47821 5.56287 5.66750 5.72093 5.91507 6.11143 6.73571 6.85766 6.89900 7.31948 7.49291 8.89465 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.006217 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.733478 B = 4502.622401 C = 5099.987306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.003 1.003 4 C -0.544 4.544 5 H 0.074 0.926 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.971 3.029 9 H -0.259 1.259 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.691 5.691 13 C 0.514 3.486 14 O -0.573 6.573 15 C -0.067 4.067 16 C 0.498 3.502 17 O -0.531 6.531 18 O -0.501 6.501 19 C -0.099 4.099 20 C -0.123 4.123 21 C -0.114 4.114 22 C -0.133 4.133 23 C -0.078 4.078 24 H 0.014 0.986 25 H 0.065 0.935 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.407 0.593 29 H 0.433 0.567 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.094 0.906 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -9.439 13.729 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.015 0.985 4 C -0.582 4.582 5 H 0.092 0.908 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.340 5.340 13 C 0.299 3.701 14 O -0.454 6.454 15 C -0.071 4.071 16 C 0.341 3.659 17 O -0.421 6.421 18 O -0.315 6.315 19 C -0.137 4.137 20 C -0.160 4.160 21 C -0.151 4.151 22 C -0.171 4.171 23 C -0.116 4.116 24 H 0.033 0.967 25 H 0.084 0.916 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.243 0.757 29 H 0.295 0.705 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.895 -8.280 13.823 16.138 hybrid contribution 1.029 -0.287 -1.320 1.698 sum 1.924 -8.567 12.504 15.279 Atomic orbital electron populations 1.21867 0.97903 0.99579 0.99629 1.18379 0.91357 0.91733 0.81724 0.98528 1.21567 1.32440 1.13504 0.90705 0.90834 1.25773 0.94896 0.95574 1.02254 1.70054 1.37066 1.23966 1.24509 0.85318 0.78121 0.78551 0.78476 1.18255 1.20384 1.21188 1.46301 1.64110 1.14402 1.09186 1.20288 0.78348 0.86836 0.84646 1.90604 1.52581 1.17413 1.84809 1.20992 0.90919 0.99338 0.95874 1.22923 0.90645 0.75640 0.76727 1.90692 1.44453 1.58139 1.48803 1.84466 1.40726 1.55869 1.50458 1.21671 0.93876 0.93777 1.04336 1.21597 0.95869 0.99945 0.98601 1.21558 0.99631 0.95691 0.98244 1.21778 0.93965 0.98902 1.02411 1.21241 0.98769 0.96638 0.94939 0.96684 0.91583 0.93915 0.92591 0.75692 0.70459 0.89487 0.87516 0.88459 0.94426 0.89552 0.91155 0.90460 0.92190 0.88713 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.50 9.26 71.98 0.67 -5.83 16 2 C 0.27 13.91 2.56 44.25 0.11 14.02 16 3 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 4 C -0.54 -28.48 8.73 25.60 0.22 -28.25 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.02 0.80 5.30 84.65 0.45 1.25 16 7 N -0.92 -52.24 11.32 21.44 0.24 -52.00 16 8 Si 0.97 41.57 29.54 68.60 2.03 43.60 16 9 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.59 16 12 N -0.69 -28.43 4.73 -446.09 -2.11 -30.54 16 13 C 0.51 20.38 4.92 87.66 0.43 20.81 16 14 O -0.57 -27.38 13.32 -3.03 -0.04 -27.42 16 15 C -0.07 -1.97 0.57 -53.67 -0.03 -2.00 16 16 C 0.50 14.33 6.91 71.23 0.49 14.83 16 17 O -0.53 -17.39 16.74 21.94 0.37 -17.02 16 18 O -0.50 -11.51 11.78 -51.40 -0.61 -12.11 16 19 C -0.10 -2.17 4.57 30.59 0.14 -2.03 16 20 C -0.12 -2.76 5.70 30.59 0.17 -2.59 16 21 C -0.11 -2.38 5.92 30.60 0.18 -2.19 16 22 C -0.13 -3.63 5.63 30.59 0.17 -3.46 16 23 C -0.08 -2.24 3.66 30.59 0.11 -2.12 16 24 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 26 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.41 14.58 6.63 -92.71 -0.61 13.96 16 29 H 0.43 5.88 9.10 -74.06 -0.67 5.21 16 30 H 0.09 1.82 7.54 -2.39 -0.02 1.81 16 31 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.04 1.12 7.22 -2.39 -0.02 1.10 16 34 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.06 2.14 5.51 -2.39 -0.01 2.13 16 38 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 39 H 0.05 1.63 8.06 -2.39 -0.02 1.61 16 Total: -1.00 -69.17 311.32 2.79 -66.38 By element: Atomic # 1 Polarization: 26.89 SS G_CDS: -0.22 Total: 26.68 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 3.12 Total: 2.43 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -1.87 Total: -82.54 kcal Atomic # 8 Polarization: -56.27 SS G_CDS: -0.28 Total: -56.55 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -69.17 2.79 -66.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603118457.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.116 kcal (2) G-P(sol) polarization free energy of solvation -69.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds